Wall clock time and date at job start Fri Apr 10 2020 18:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47185 * 179.97438 * 6 4 3 8 8 C 1.48629 * 110.99886 * 52.55039 * 7 6 4 9 9 C 1.55159 * 103.36238 * 159.14364 * 8 7 6 10 10 C 1.53612 * 102.65660 * 323.42102 * 9 8 7 11 11 C 1.53619 * 110.85545 * 142.30640 * 10 9 8 12 12 C 1.54703 * 101.51561 * 96.86673 * 11 10 9 13 13 N 1.46881 * 105.51650 * 24.53645 * 12 11 10 14 14 C 1.46499 * 124.37305 * 163.17363 * 13 12 11 15 15 C 1.53002 * 109.47071 * 90.00122 * 14 13 12 16 16 C 1.50699 * 109.46935 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00252 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00014 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47303 * 89.99465 * 20 18 16 22 22 H 1.48503 * 109.46800 * 209.99540 * 20 18 16 23 23 H 1.48506 * 109.46869 * 329.99480 * 20 18 16 24 24 C 1.34752 * 111.25591 * 343.17875 * 13 12 11 25 25 O 1.21286 * 125.13023 * 181.03085 * 24 13 12 26 26 C 1.48178 * 111.00057 * 169.99975 * 7 6 4 27 27 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 32 32 H 1.08993 * 109.47418 * 300.00024 * 6 4 3 33 33 H 1.09000 * 109.47089 * 60.00096 * 6 4 3 34 34 H 1.08998 * 110.63694 * 277.61276 * 8 7 6 35 35 H 1.08995 * 110.63960 * 40.67526 * 8 7 6 36 36 H 1.08998 * 110.77577 * 205.12641 * 9 8 7 37 37 H 1.09006 * 110.93435 * 81.78183 * 9 8 7 38 38 H 1.08995 * 111.01487 * 214.92789 * 11 10 9 39 39 H 1.09000 * 111.01530 * 338.76810 * 11 10 9 40 40 H 1.08998 * 110.23671 * 143.54819 * 12 11 10 41 41 H 1.09002 * 110.23873 * 265.52601 * 12 11 10 42 42 H 1.09001 * 109.47375 * 210.00481 * 14 13 12 43 43 H 1.08997 * 109.47135 * 330.00396 * 14 13 12 44 44 H 1.08996 * 109.46867 * 300.00355 * 15 14 13 45 45 H 1.08997 * 109.46917 * 60.00140 * 15 14 13 46 46 H 0.97001 * 119.99761 * 180.02562 * 19 18 16 47 47 H 1.09002 * 110.02171 * 333.66229 * 26 7 6 48 48 H 1.08998 * 110.02206 * 95.00705 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3878 2.8604 0.0023 8 6 5.8764 1.9901 -1.0990 9 6 7.3478 2.4442 -1.2891 10 6 7.2665 3.9589 -1.0468 11 6 8.5053 4.4587 -0.2882 12 6 9.3900 4.9749 -1.4476 13 7 8.4601 5.2979 -2.5377 14 6 8.7967 6.1365 -3.6908 15 6 9.3537 5.2594 -4.8139 16 6 9.7006 6.1221 -5.9999 17 1 9.5394 7.1891 -5.9570 18 6 10.2227 5.5490 -7.1400 19 7 10.4185 4.2495 -7.1924 20 14 10.6520 6.6182 -8.6105 21 1 12.0598 7.0763 -8.4952 22 1 10.4880 5.8314 -9.8592 23 1 9.7492 7.7968 -8.6458 24 6 7.2573 4.7235 -2.3401 25 8 6.3104 4.8100 -3.0930 26 6 5.9896 4.1931 -0.2373 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.5852 3.4697 -0.8887 33 1 3.5845 3.4692 0.8912 34 1 5.8327 0.9407 -0.8076 35 1 5.3008 2.1617 -2.0085 36 1 7.6900 2.2325 -2.3021 37 1 7.9997 1.9698 -0.5554 38 1 8.2455 5.2671 0.3951 39 1 8.9939 3.6422 0.2435 40 1 9.9334 5.8678 -1.1385 41 1 10.0872 4.1991 -1.7642 42 1 7.9010 6.6496 -4.0408 43 1 9.5461 6.8721 -3.3987 44 1 10.2494 4.7463 -4.4639 45 1 8.6043 4.5238 -5.1061 46 1 10.7861 3.8464 -7.9944 47 1 5.2987 4.8184 -0.8029 48 1 6.2314 4.6697 0.7127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272889134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:18 Heat of formation + Delta-G solvation = -110.108713 kcal Electronic energy + Delta-G solvation = -28084.141073 eV Core-core repulsion = 24139.253239 eV Total energy + Delta-G solvation = -3944.887833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16933 -40.51278 -38.04699 -36.64782 -36.02454 -34.05819 -32.73341 -32.06426 -30.78751 -29.18700 -28.27229 -27.16113 -25.06140 -23.69722 -23.12006 -21.91987 -21.88287 -20.94852 -20.25359 -18.69293 -17.83872 -17.01810 -16.74185 -16.58890 -16.03341 -15.66229 -15.35205 -15.14367 -14.80885 -14.53697 -14.33604 -14.03831 -13.67978 -13.40104 -13.26643 -13.07655 -12.80833 -12.60897 -12.56517 -12.35495 -12.26014 -12.01680 -11.95209 -11.90961 -11.57949 -11.33889 -11.29685 -10.98783 -10.96242 -10.83689 -10.70086 -10.68117 -10.20599 -10.00564 -9.86686 -9.36471 -9.11107 -8.66266 -8.38815 -8.03923 -6.03673 -4.07361 2.00344 2.28396 2.95484 3.30173 3.36191 3.39448 3.49175 3.83129 4.29028 4.36987 4.41936 4.44311 4.58181 4.59030 4.65664 4.91095 4.92244 4.96228 5.05750 5.10487 5.28388 5.31961 5.32550 5.32756 5.41733 5.52007 5.55812 5.60692 5.67181 5.74562 5.83155 5.93343 5.96256 6.02420 6.07309 6.10872 6.28333 6.43384 6.60758 6.67214 6.78710 6.98191 7.48404 7.58000 7.64759 7.82740 7.95780 8.31792 8.63444 8.99355 9.56773 11.07726 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002504 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.595384 B =11180.380297 C =12062.332001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.492 6.492 6 C 0.051 3.949 7 N -0.501 5.501 8 C 0.029 3.971 9 C -0.099 4.099 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.100 3.900 13 N -0.609 5.609 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.524 3.476 25 O -0.531 6.531 26 C 0.059 3.941 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.060 0.940 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -5.113 20.448 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.278 6.278 4 C 0.306 3.694 5 O -0.378 6.378 6 C -0.078 4.078 7 N -0.226 5.226 8 C -0.098 4.098 9 C -0.138 4.138 10 C -0.112 4.112 11 C -0.155 4.155 12 C -0.023 4.023 13 N -0.342 5.342 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.310 3.690 25 O -0.408 6.408 26 C -0.068 4.068 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.195 -5.665 20.361 24.915 hybrid contribution 0.155 0.680 -1.753 1.887 sum -13.039 -4.984 18.608 23.262 Atomic orbital electron populations 1.21811 0.92584 1.03007 1.03578 1.23024 0.95351 0.80041 1.02697 1.86486 1.24479 1.32619 1.84233 1.23532 0.80542 0.92696 0.72653 1.90625 1.59758 1.43108 1.44322 1.21889 0.90075 0.90802 1.05010 1.64954 1.03507 1.09448 1.44703 1.23626 0.94549 0.99745 0.91909 1.22381 0.97205 0.91151 1.03015 1.21541 0.96792 0.97668 0.95188 1.22676 0.94377 1.01660 0.96750 1.22116 0.92722 1.00992 0.86515 1.48623 1.12039 1.49950 1.23566 1.21818 1.00044 0.92802 0.84567 1.19404 0.96190 0.95340 0.91676 1.21081 1.42443 0.93899 0.98713 0.92475 1.25012 0.95625 0.94983 0.98706 1.69976 1.44697 1.09829 1.28625 0.86545 0.78704 0.80388 0.82074 1.20610 1.21168 1.19790 1.20189 0.82839 0.79173 0.86802 1.90689 1.37362 1.61968 1.50756 1.22760 0.94189 0.90514 0.99382 0.91397 0.91468 0.90199 0.91163 0.91152 0.89904 0.86376 0.87131 0.93457 0.90265 0.89480 0.89975 0.88972 0.90510 0.90965 0.91197 0.91552 0.96442 0.96161 0.92913 0.92157 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.73 10.22 -39.27 -0.40 -4.13 16 4 C 0.46 5.37 7.67 36.00 0.28 5.65 16 5 O -0.49 -6.83 13.28 -18.75 -0.25 -7.08 16 6 C 0.05 0.53 5.63 -4.98 -0.03 0.50 16 7 N -0.50 -6.00 5.27 -232.07 -1.22 -7.23 16 8 C 0.03 0.39 5.30 -1.72 -0.01 0.38 16 9 C -0.10 -1.33 6.22 -25.27 -0.16 -1.49 16 10 C -0.11 -1.45 0.77 -155.25 -0.12 -1.57 16 11 C -0.12 -1.22 6.19 -25.51 -0.16 -1.38 16 12 C 0.10 1.32 7.37 -2.94 -0.02 1.30 16 13 N -0.61 -10.98 2.94 -172.52 -0.51 -11.49 16 14 C 0.13 2.70 5.88 -4.04 -0.02 2.68 16 15 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.52 9.64 6.60 -11.22 -0.07 9.56 16 25 O -0.53 -11.92 17.15 5.55 0.10 -11.83 16 26 C 0.06 0.70 6.02 -3.12 -0.02 0.68 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.86 7.82 -51.93 -0.41 0.45 16 33 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.56 6.01 -51.93 -0.31 1.25 16 35 H 0.05 0.73 8.01 -51.93 -0.42 0.31 16 36 H 0.08 1.22 7.85 -51.93 -0.41 0.82 16 37 H 0.09 0.99 7.46 -51.93 -0.39 0.60 16 38 H 0.08 0.71 7.59 -51.93 -0.39 0.32 16 39 H 0.09 0.79 7.45 -51.93 -0.39 0.40 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.56 7.95 -51.93 -0.41 1.15 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.06 0.78 6.87 -51.93 -0.36 0.43 16 48 H 0.09 0.86 7.40 -51.93 -0.38 0.48 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -35.06 387.00 -9.07 -44.13 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.05 Total: -1.71 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.28 Total: 3.16 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.00 Total: -45.15 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.56 Total: -23.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.06 -9.07 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272889134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.977 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds