Wall clock time and date at job start Fri Apr 10 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47185 * 179.97438 * 6 4 3 8 8 C 1.48629 * 110.99886 * 52.55039 * 7 6 4 9 9 C 1.55159 * 103.36238 * 159.14364 * 8 7 6 10 10 C 1.53612 * 102.65660 * 323.42102 * 9 8 7 11 11 C 1.53619 * 110.85545 * 142.30640 * 10 9 8 12 12 C 1.54703 * 101.51561 * 96.86673 * 11 10 9 13 13 N 1.46881 * 105.51650 * 24.53645 * 12 11 10 14 14 C 1.46499 * 124.37305 * 163.17363 * 13 12 11 15 15 C 1.53002 * 109.47071 * 90.00122 * 14 13 12 16 16 C 1.50699 * 109.46935 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00252 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99735 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00014 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47303 * 89.99465 * 20 18 16 22 22 H 1.48503 * 109.46800 * 209.99540 * 20 18 16 23 23 H 1.48506 * 109.46869 * 329.99480 * 20 18 16 24 24 C 1.34752 * 111.25591 * 343.17875 * 13 12 11 25 25 O 1.21286 * 125.13023 * 181.03085 * 24 13 12 26 26 C 1.48178 * 111.00057 * 169.99975 * 7 6 4 27 27 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 32 32 H 1.08993 * 109.47418 * 300.00024 * 6 4 3 33 33 H 1.09000 * 109.47089 * 60.00096 * 6 4 3 34 34 H 1.08998 * 110.63694 * 277.61276 * 8 7 6 35 35 H 1.08995 * 110.63960 * 40.67526 * 8 7 6 36 36 H 1.08998 * 110.77577 * 205.12641 * 9 8 7 37 37 H 1.09006 * 110.93435 * 81.78183 * 9 8 7 38 38 H 1.08995 * 111.01487 * 214.92789 * 11 10 9 39 39 H 1.09000 * 111.01530 * 338.76810 * 11 10 9 40 40 H 1.08998 * 110.23671 * 143.54819 * 12 11 10 41 41 H 1.09002 * 110.23873 * 265.52601 * 12 11 10 42 42 H 1.09001 * 109.47375 * 210.00481 * 14 13 12 43 43 H 1.08997 * 109.47135 * 330.00396 * 14 13 12 44 44 H 1.08996 * 109.46867 * 300.00355 * 15 14 13 45 45 H 1.08997 * 109.46917 * 60.00140 * 15 14 13 46 46 H 0.97001 * 119.99761 * 180.02562 * 19 18 16 47 47 H 1.09002 * 110.02171 * 333.66229 * 26 7 6 48 48 H 1.08998 * 110.02206 * 95.00705 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3878 2.8604 0.0023 8 6 5.8764 1.9901 -1.0990 9 6 7.3478 2.4442 -1.2891 10 6 7.2665 3.9589 -1.0468 11 6 8.5053 4.4587 -0.2882 12 6 9.3900 4.9749 -1.4476 13 7 8.4601 5.2979 -2.5377 14 6 8.7967 6.1365 -3.6908 15 6 9.3537 5.2594 -4.8139 16 6 9.7006 6.1221 -5.9999 17 1 9.5394 7.1891 -5.9570 18 6 10.2227 5.5490 -7.1400 19 7 10.4185 4.2495 -7.1924 20 14 10.6520 6.6182 -8.6105 21 1 12.0598 7.0763 -8.4952 22 1 10.4880 5.8314 -9.8592 23 1 9.7492 7.7968 -8.6458 24 6 7.2573 4.7235 -2.3401 25 8 6.3104 4.8100 -3.0930 26 6 5.9896 4.1931 -0.2373 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.5852 3.4697 -0.8887 33 1 3.5845 3.4692 0.8912 34 1 5.8327 0.9407 -0.8076 35 1 5.3008 2.1617 -2.0085 36 1 7.6900 2.2325 -2.3021 37 1 7.9997 1.9698 -0.5554 38 1 8.2455 5.2671 0.3951 39 1 8.9939 3.6422 0.2435 40 1 9.9334 5.8678 -1.1385 41 1 10.0872 4.1991 -1.7642 42 1 7.9010 6.6496 -4.0408 43 1 9.5461 6.8721 -3.3987 44 1 10.2494 4.7463 -4.4639 45 1 8.6043 4.5238 -5.1061 46 1 10.7861 3.8464 -7.9944 47 1 5.2987 4.8184 -0.8029 48 1 6.2314 4.6697 0.7127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272889134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:17 Heat of formation + Delta-G solvation = -134.234259 kcal Electronic energy + Delta-G solvation = -28085.187235 eV Core-core repulsion = 24139.253239 eV Total energy + Delta-G solvation = -3945.933995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29536 -41.51366 -39.15267 -37.65717 -37.45367 -35.79444 -34.33480 -32.83718 -32.11401 -30.61199 -29.42865 -28.18266 -26.94603 -24.62314 -24.04758 -23.59583 -22.86692 -21.92661 -21.59292 -20.01127 -18.75156 -18.71068 -17.87863 -17.69545 -17.21607 -17.06958 -16.73043 -16.38904 -16.11443 -15.79691 -15.54666 -14.99312 -14.88787 -14.60856 -14.51865 -14.36450 -14.14959 -13.83049 -13.68302 -13.51831 -13.36020 -13.15243 -12.99801 -12.87459 -12.85277 -12.63136 -12.58714 -12.50552 -12.38587 -12.05235 -12.00591 -11.82064 -11.61630 -11.54443 -11.44112 -11.17684 -10.67621 -10.61394 -9.66021 -9.58572 -8.26594 -6.39887 1.10208 1.36847 1.39698 1.45718 1.50573 1.56198 2.10861 2.39056 2.84009 3.06853 3.26388 3.32743 3.48125 3.70082 3.90256 3.97927 4.03369 4.06021 4.12976 4.22707 4.25893 4.29770 4.33067 4.38606 4.47566 4.56968 4.61661 4.71516 4.76777 4.79541 4.84480 4.87913 4.90533 4.94251 4.98392 5.08059 5.14453 5.20141 5.30872 5.42530 5.44241 5.57213 5.57810 5.71314 5.79517 6.11927 6.26971 6.69692 6.75852 7.17425 7.30314 8.85660 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002504 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.595384 B =11180.380297 C =12062.332001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.520 6.520 6 C 0.049 3.951 7 N -0.494 5.494 8 C 0.034 3.966 9 C -0.098 4.098 10 C -0.102 4.102 11 C -0.098 4.098 12 C 0.090 3.910 13 N -0.617 5.617 14 C 0.142 3.858 15 C 0.023 3.977 16 C -0.545 4.545 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.509 3.491 25 O -0.586 6.586 26 C 0.063 3.937 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.016 0.984 36 H 0.046 0.954 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.000 1.000 45 H -0.031 1.031 46 H 0.264 0.736 47 H 0.044 0.956 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 -3.701 22.931 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.280 6.280 4 C 0.307 3.693 5 O -0.409 6.409 6 C -0.079 4.079 7 N -0.219 5.219 8 C -0.094 4.094 9 C -0.136 4.136 10 C -0.106 4.106 11 C -0.136 4.136 12 C -0.032 4.032 13 N -0.348 5.348 14 C 0.020 3.980 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.187 1.187 24 C 0.297 3.703 25 O -0.467 6.467 26 C -0.064 4.064 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.124 0.876 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.018 0.982 45 H -0.013 1.013 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.783 -4.244 22.893 26.561 hybrid contribution -0.019 0.167 -2.556 2.562 sum -12.803 -4.076 20.336 24.374 Atomic orbital electron populations 1.21828 0.90412 1.04385 1.03722 1.23278 0.97058 0.79051 1.02509 1.86490 1.23757 1.33921 1.83798 1.23796 0.80803 0.92877 0.71825 1.90610 1.60407 1.44035 1.45804 1.22047 0.89052 0.90385 1.06444 1.65014 1.04601 1.09218 1.43103 1.23472 0.94542 1.00034 0.91332 1.22407 0.97453 0.91720 1.02011 1.21549 0.99612 0.96479 0.92967 1.22775 0.91667 1.03474 0.95659 1.22485 0.92516 1.02254 0.85919 1.48745 1.13152 1.49246 1.23645 1.21383 0.99588 0.92512 0.84530 1.19214 0.93987 0.94769 0.93490 1.21552 1.42368 0.94695 0.99673 0.91365 1.26068 0.95310 0.96404 1.02230 1.70126 1.45565 1.11959 1.29728 0.85342 0.79162 0.78441 0.77467 1.18945 1.21014 1.18683 1.21186 0.82115 0.78814 0.88153 1.90643 1.39281 1.63752 1.52984 1.22864 0.92828 0.90196 1.00522 0.91681 0.90832 0.88206 0.90816 0.91959 0.90255 0.82940 0.87612 0.96568 0.93542 0.86444 0.86772 0.85962 0.87773 0.91635 0.92951 0.88721 0.98178 1.01272 0.92696 0.93757 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.36 -7.37 10.22 -51.47 -0.53 -7.90 16 4 C 0.46 10.65 7.67 71.23 0.55 11.20 16 5 O -0.52 -14.61 13.28 21.97 0.29 -14.32 16 6 C 0.05 0.96 5.63 85.55 0.48 1.44 16 7 N -0.49 -11.16 5.27 -888.14 -4.68 -15.84 16 8 C 0.03 0.95 5.30 86.71 0.46 1.41 16 9 C -0.10 -2.61 6.22 31.54 0.20 -2.41 16 10 C -0.10 -2.61 0.77 -52.66 -0.04 -2.65 16 11 C -0.10 -1.66 6.19 31.38 0.19 -1.46 16 12 C 0.09 2.17 7.37 86.89 0.64 2.81 16 13 N -0.62 -22.33 2.94 -818.15 -2.41 -24.74 16 14 C 0.14 6.12 5.88 86.38 0.51 6.63 16 15 C 0.02 1.30 5.30 29.85 0.16 1.46 16 16 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 17 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 19 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 20 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 24 C 0.51 19.23 6.60 87.52 0.58 19.81 16 25 O -0.59 -28.03 17.15 -3.05 -0.05 -28.09 16 26 C 0.06 1.35 6.02 86.05 0.52 1.87 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.08 1.65 7.82 -2.39 -0.02 1.63 16 33 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 3.08 6.01 -2.39 -0.01 3.06 16 35 H 0.02 0.54 8.01 -2.39 -0.02 0.52 16 36 H 0.05 1.53 7.85 -2.39 -0.02 1.51 16 37 H 0.12 2.41 7.46 -2.38 -0.02 2.39 16 38 H 0.11 1.29 7.59 -2.39 -0.02 1.28 16 39 H 0.12 1.44 7.45 -2.39 -0.02 1.42 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 2.42 7.95 -2.39 -0.02 2.41 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H -0.03 -2.02 8.14 -2.39 -0.02 -2.04 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.04 1.12 6.87 -2.39 -0.02 1.10 16 48 H 0.13 1.83 7.40 -2.39 -0.02 1.81 16 Total: -1.00 -82.02 387.00 1.99 -80.03 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.94 Total: 12.65 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.12 Total: 9.56 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -6.81 Total: -98.95 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.29 Total: -50.30 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -82.02 1.99 -80.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272889134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.207 kcal (2) G-P(sol) polarization free energy of solvation -82.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds