Wall clock time and date at job start Fri Apr 10 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34219 * 117.00163 * 2 1 4 4 O 1.20827 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00206 * 179.97438 * 3 2 1 6 6 N 1.46902 * 109.47455 * 180.02562 * 5 3 2 7 7 C 1.46979 * 110.99655 * 294.48456 * 6 5 3 8 8 C 1.53051 * 109.46131 * 175.37729 * 7 6 5 9 9 C 1.53130 * 109.34745 * 59.84030 * 8 7 6 10 10 C 1.53247 * 109.07003 * 301.67464 * 9 8 7 11 11 C 1.45964 * 111.00092 * 169.99807 * 6 5 3 12 12 C 1.53987 * 110.65935 * 307.17704 * 11 6 5 13 13 C 1.51428 * 104.06911 * 94.01598 * 12 11 6 14 14 O 1.21283 * 124.94403 * 195.72117 * 13 12 11 15 15 N 1.34500 * 110.10503 * 15.99014 * 13 12 11 16 16 C 1.46501 * 124.34905 * 180.09164 * 15 13 12 17 17 C 1.52993 * 109.47284 * 90.01915 * 16 15 13 18 18 C 1.50700 * 109.47290 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99894 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00394 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99796 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99547 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47083 * 90.00500 * 22 20 18 24 24 H 1.48503 * 109.46886 * 209.99590 * 22 20 18 25 25 H 1.48491 * 109.47438 * 329.99865 * 22 20 18 26 26 C 1.46912 * 111.29697 * 359.93852 * 15 13 12 27 27 H 1.08999 * 109.46606 * 60.00500 * 1 2 3 28 28 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47255 * 300.00269 * 1 2 3 30 30 H 1.08994 * 109.46939 * 59.99971 * 5 3 2 31 31 H 1.08995 * 109.46994 * 300.00095 * 5 3 2 32 32 H 1.08995 * 109.47393 * 55.37948 * 7 6 5 33 33 H 1.08994 * 109.46964 * 295.37394 * 7 6 5 34 34 H 1.08996 * 109.48949 * 299.87548 * 8 7 6 35 35 H 1.08995 * 109.48662 * 179.80225 * 8 7 6 36 36 H 1.08998 * 109.53693 * 181.79932 * 9 8 7 37 37 H 1.08995 * 109.60692 * 61.58972 * 9 8 7 38 38 H 1.08996 * 109.47980 * 296.42714 * 10 9 8 39 39 H 1.09001 * 109.47815 * 176.38945 * 10 9 8 40 40 H 1.09001 * 110.51112 * 335.37149 * 12 11 6 41 41 H 1.08999 * 110.62903 * 212.71756 * 12 11 6 42 42 H 1.09000 * 109.46529 * 210.02438 * 16 15 13 43 43 H 1.08998 * 109.47170 * 330.01673 * 16 15 13 44 44 H 1.09000 * 109.47765 * 299.99767 * 17 16 15 45 45 H 1.09007 * 109.47154 * 60.00406 * 17 16 15 46 46 H 0.97006 * 119.99635 * 180.02562 * 21 20 18 47 47 H 1.09009 * 110.42576 * 224.89630 * 26 15 13 48 48 H 1.08997 * 110.12190 * 102.92277 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9829 2.6835 0.0011 7 6 3.5874 3.3501 -1.2477 8 6 3.9341 4.8384 -1.1632 9 6 5.4422 4.9967 -0.9498 10 6 5.8461 4.2624 0.3332 11 6 5.4181 2.8045 0.2383 12 6 5.8247 2.0392 1.5112 13 6 6.2536 0.6792 1.0017 14 8 6.3904 -0.3093 1.6910 15 7 6.4664 0.7286 -0.3254 16 6 6.8901 -0.4145 -1.1378 17 6 5.6568 -1.1575 -1.6553 18 6 6.0927 -2.3330 -2.4914 19 1 7.1442 -2.5307 -2.6387 20 6 5.1490 -3.1562 -3.0685 21 7 5.5295 -4.1823 -3.7978 22 14 3.3304 -2.8139 -2.8144 23 1 2.8412 -1.9140 -3.8897 24 1 2.5755 -4.0920 -2.8572 25 1 3.1287 -2.1637 -1.4948 26 6 6.2159 2.0754 -0.8562 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7808 0.8908 32 1 2.5138 3.2350 -1.3968 33 1 4.1208 2.8997 -2.0847 34 1 3.3991 5.2896 -0.3276 35 1 3.6441 5.3325 -2.0905 36 1 5.6882 6.0545 -0.8572 37 1 5.9783 4.5705 -1.7977 38 1 5.3577 4.7295 1.1884 39 1 6.9276 4.3163 0.4578 40 1 4.9750 1.9432 2.1870 41 1 6.6546 2.5388 2.0110 42 1 7.4820 -0.0607 -1.9819 43 1 7.4921 -1.0894 -0.5294 44 1 5.0649 -1.5113 -0.8111 45 1 5.0548 -0.4826 -2.2638 46 1 4.8656 -4.7613 -4.2041 47 1 5.6322 2.0196 -1.7752 48 1 7.1602 2.5878 -1.0398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273931873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:06 Heat of formation + Delta-G solvation = -104.520678 kcal Electronic energy + Delta-G solvation = -30420.324496 eV Core-core repulsion = 26475.678978 eV Total energy + Delta-G solvation = -3944.645518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.66005 -40.20986 -38.37369 -36.47636 -35.61209 -33.98324 -33.72286 -32.35471 -30.21192 -29.02627 -28.22120 -27.12685 -26.14245 -24.51871 -23.66936 -21.91336 -21.13415 -20.86227 -19.37786 -18.58716 -17.85882 -17.08877 -16.78402 -16.63899 -16.34643 -15.84452 -15.38670 -15.02110 -14.80301 -14.61685 -14.38781 -14.05556 -13.62747 -13.45492 -13.32309 -13.29476 -13.14405 -12.92206 -12.66564 -12.40706 -12.22251 -12.08632 -11.99315 -11.76804 -11.60071 -11.44069 -11.04147 -10.95180 -10.83317 -10.73032 -10.70631 -10.51899 -10.16953 -10.11005 -9.89981 -9.46644 -9.29363 -8.60289 -8.58034 -8.22199 -6.10568 -4.10312 2.19824 2.53906 2.83267 3.26185 3.33059 3.35736 3.44653 3.63637 4.20958 4.29823 4.41153 4.55544 4.64980 4.73891 4.83636 4.98525 5.04210 5.07018 5.08593 5.15196 5.18753 5.23228 5.32181 5.41763 5.43188 5.47018 5.52375 5.57903 5.63014 5.70293 5.73038 5.82473 5.89028 5.90987 5.99575 6.18529 6.23576 6.36354 6.50115 6.64483 6.73466 6.87549 7.04364 7.25373 7.52117 7.69459 7.78427 8.41152 8.46993 8.92020 9.51063 11.02223 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.005919 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.039699 B = 4729.121278 C = 6039.325105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.496 6.496 5 C 0.047 3.953 6 N -0.503 5.503 7 C 0.040 3.960 8 C -0.111 4.111 9 C -0.124 4.124 10 C -0.095 4.095 11 C 0.107 3.893 12 C -0.152 4.152 13 C 0.506 3.494 14 O -0.527 6.527 15 N -0.615 5.615 16 C 0.134 3.866 17 C -0.023 4.023 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.870 3.130 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.255 1.255 26 C 0.069 3.931 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.023 0.977 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 19.698 7.078 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.383 6.383 5 C -0.081 4.081 6 N -0.228 5.228 7 C -0.086 4.086 8 C -0.149 4.149 9 C -0.162 4.162 10 C -0.133 4.133 11 C 0.016 3.984 12 C -0.193 4.193 13 C 0.293 3.707 14 O -0.404 6.404 15 N -0.349 5.349 16 C 0.014 3.986 17 C -0.061 4.061 18 C -0.560 4.560 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.696 3.304 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.179 1.179 26 C -0.056 4.056 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.026 0.974 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.713 19.463 7.664 21.442 hybrid contribution -0.821 -0.445 -0.837 1.254 sum -5.534 19.018 6.827 20.951 Atomic orbital electron populations 1.23269 0.76307 1.03830 1.02332 1.86596 1.23405 1.33124 1.83851 1.23502 0.91774 0.81439 0.72414 1.90600 1.66915 1.35946 1.44838 1.21818 0.88582 0.91505 1.06179 1.61502 1.12951 1.11487 1.36822 1.22420 1.02440 0.94651 0.89130 1.21523 0.95937 0.95115 1.02315 1.21661 0.96423 1.00470 0.97655 1.21425 1.00923 0.91695 0.99248 1.21382 0.86441 0.96418 0.94115 1.22550 1.04043 0.94603 0.98070 1.20839 0.77332 0.89988 0.82582 1.90748 1.52531 1.36574 1.60544 1.48686 1.67237 1.10584 1.08358 1.21627 0.98599 0.84943 0.93383 1.19905 0.93985 0.95775 0.96407 1.20919 0.95380 1.09517 1.30221 0.90780 1.24957 0.98935 0.94640 0.94445 1.69902 1.34230 1.16249 1.33372 0.86908 0.85625 0.78036 0.79790 1.20508 1.21201 1.17882 1.22810 1.00693 0.83627 0.98466 0.91949 0.88048 0.91829 0.88973 0.86439 0.88816 0.94221 0.90816 0.91399 0.91379 0.91792 0.90201 0.90600 0.87372 0.87107 0.91013 0.90245 0.95877 0.97443 0.92621 0.90106 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.35 -5.76 10.56 -39.23 -0.41 -6.17 16 3 C 0.47 7.41 7.65 36.01 0.28 7.68 16 4 O -0.50 -8.05 14.04 -18.75 -0.26 -8.32 16 5 C 0.05 0.72 4.16 -4.97 -0.02 0.70 16 6 N -0.50 -6.27 4.20 -220.35 -0.93 -7.19 16 7 C 0.04 0.47 4.89 -3.75 -0.02 0.45 16 8 C -0.11 -0.99 6.07 -26.64 -0.16 -1.16 16 9 C -0.12 -0.94 5.82 -26.54 -0.15 -1.09 16 10 C -0.09 -0.75 4.65 -26.99 -0.13 -0.87 16 11 C 0.11 1.15 0.71 -131.56 -0.09 1.06 16 12 C -0.15 -1.79 5.44 -27.01 -0.15 -1.94 16 13 C 0.51 8.40 6.08 -10.75 -0.07 8.34 16 14 O -0.53 -11.09 17.59 5.55 0.10 -10.99 16 15 N -0.61 -9.90 2.27 -172.62 -0.39 -10.29 16 16 C 0.13 2.62 5.88 -4.04 -0.02 2.59 16 17 C -0.02 -0.53 3.70 -27.89 -0.10 -0.63 16 18 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 19 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 21 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 22 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.25 -6.20 6.54 56.52 0.37 -5.83 16 26 C 0.07 0.85 4.81 -3.39 -0.02 0.83 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.09 1.57 5.64 -51.93 -0.29 1.27 16 31 H 0.12 1.86 5.18 -51.93 -0.27 1.59 16 32 H 0.09 1.25 5.77 -51.93 -0.30 0.95 16 33 H 0.04 0.47 6.21 -51.93 -0.32 0.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.48 7.60 -51.93 -0.39 0.09 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.11 1.28 7.40 -51.93 -0.38 0.89 16 41 H 0.11 1.04 7.86 -51.93 -0.41 0.63 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.67 7.92 -51.93 -0.41 1.26 16 44 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 45 H 0.01 0.17 6.90 -51.93 -0.36 -0.19 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.08 1.04 5.76 -51.92 -0.30 0.74 16 48 H 0.08 0.80 7.78 -51.93 -0.40 0.39 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -34.06 367.08 -7.88 -41.95 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.60 Total: 0.76 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.02 Total: 4.51 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.54 Total: -44.27 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.58 Total: -25.48 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.06 -7.88 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.576 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds