Wall clock time and date at job start Fri Apr 10 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34219 * 117.00163 * 2 1 4 4 O 1.20827 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00206 * 179.97438 * 3 2 1 6 6 N 1.46902 * 109.47455 * 180.02562 * 5 3 2 7 7 C 1.46979 * 110.99655 * 294.48456 * 6 5 3 8 8 C 1.53051 * 109.46131 * 175.37729 * 7 6 5 9 9 C 1.53130 * 109.34745 * 59.84030 * 8 7 6 10 10 C 1.53247 * 109.07003 * 301.67464 * 9 8 7 11 11 C 1.45964 * 111.00092 * 169.99807 * 6 5 3 12 12 C 1.53987 * 110.65935 * 307.17704 * 11 6 5 13 13 C 1.51428 * 104.06911 * 94.01598 * 12 11 6 14 14 O 1.21283 * 124.94403 * 195.72117 * 13 12 11 15 15 N 1.34500 * 110.10503 * 15.99014 * 13 12 11 16 16 C 1.46501 * 124.34905 * 180.09164 * 15 13 12 17 17 C 1.52993 * 109.47284 * 90.01915 * 16 15 13 18 18 C 1.50700 * 109.47290 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99894 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00394 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99796 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99547 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47083 * 90.00500 * 22 20 18 24 24 H 1.48503 * 109.46886 * 209.99590 * 22 20 18 25 25 H 1.48491 * 109.47438 * 329.99865 * 22 20 18 26 26 C 1.46912 * 111.29697 * 359.93852 * 15 13 12 27 27 H 1.08999 * 109.46606 * 60.00500 * 1 2 3 28 28 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47255 * 300.00269 * 1 2 3 30 30 H 1.08994 * 109.46939 * 59.99971 * 5 3 2 31 31 H 1.08995 * 109.46994 * 300.00095 * 5 3 2 32 32 H 1.08995 * 109.47393 * 55.37948 * 7 6 5 33 33 H 1.08994 * 109.46964 * 295.37394 * 7 6 5 34 34 H 1.08996 * 109.48949 * 299.87548 * 8 7 6 35 35 H 1.08995 * 109.48662 * 179.80225 * 8 7 6 36 36 H 1.08998 * 109.53693 * 181.79932 * 9 8 7 37 37 H 1.08995 * 109.60692 * 61.58972 * 9 8 7 38 38 H 1.08996 * 109.47980 * 296.42714 * 10 9 8 39 39 H 1.09001 * 109.47815 * 176.38945 * 10 9 8 40 40 H 1.09001 * 110.51112 * 335.37149 * 12 11 6 41 41 H 1.08999 * 110.62903 * 212.71756 * 12 11 6 42 42 H 1.09000 * 109.46529 * 210.02438 * 16 15 13 43 43 H 1.08998 * 109.47170 * 330.01673 * 16 15 13 44 44 H 1.09000 * 109.47765 * 299.99767 * 17 16 15 45 45 H 1.09007 * 109.47154 * 60.00406 * 17 16 15 46 46 H 0.97006 * 119.99635 * 180.02562 * 21 20 18 47 47 H 1.09009 * 110.42576 * 224.89630 * 26 15 13 48 48 H 1.08997 * 110.12190 * 102.92277 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9829 2.6835 0.0011 7 6 3.5874 3.3501 -1.2477 8 6 3.9341 4.8384 -1.1632 9 6 5.4422 4.9967 -0.9498 10 6 5.8461 4.2624 0.3332 11 6 5.4181 2.8045 0.2383 12 6 5.8247 2.0392 1.5112 13 6 6.2536 0.6792 1.0017 14 8 6.3904 -0.3093 1.6910 15 7 6.4664 0.7286 -0.3254 16 6 6.8901 -0.4145 -1.1378 17 6 5.6568 -1.1575 -1.6553 18 6 6.0927 -2.3330 -2.4914 19 1 7.1442 -2.5307 -2.6387 20 6 5.1490 -3.1562 -3.0685 21 7 5.5295 -4.1823 -3.7978 22 14 3.3304 -2.8139 -2.8144 23 1 2.8412 -1.9140 -3.8897 24 1 2.5755 -4.0920 -2.8572 25 1 3.1287 -2.1637 -1.4948 26 6 6.2159 2.0754 -0.8562 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7808 0.8908 32 1 2.5138 3.2350 -1.3968 33 1 4.1208 2.8997 -2.0847 34 1 3.3991 5.2896 -0.3276 35 1 3.6441 5.3325 -2.0905 36 1 5.6882 6.0545 -0.8572 37 1 5.9783 4.5705 -1.7977 38 1 5.3577 4.7295 1.1884 39 1 6.9276 4.3163 0.4578 40 1 4.9750 1.9432 2.1870 41 1 6.6546 2.5388 2.0110 42 1 7.4820 -0.0607 -1.9819 43 1 7.4921 -1.0894 -0.5294 44 1 5.0649 -1.5113 -0.8111 45 1 5.0548 -0.4826 -2.2638 46 1 4.8656 -4.7613 -4.2041 47 1 5.6322 2.0196 -1.7752 48 1 7.1602 2.5878 -1.0398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273931873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:05 Heat of formation + Delta-G solvation = -127.639785 kcal Electronic energy + Delta-G solvation = -30421.327015 eV Core-core repulsion = 26475.678978 eV Total energy + Delta-G solvation = -3945.648038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.72765 -41.40492 -39.53661 -37.66865 -36.99150 -35.52440 -34.74756 -34.00689 -31.76860 -30.05760 -29.26569 -28.17631 -27.43644 -26.01678 -24.49895 -23.13085 -22.61901 -21.93766 -20.65452 -19.67875 -19.12263 -18.86349 -17.94134 -17.78807 -17.56529 -17.11768 -16.53274 -16.39941 -16.15760 -15.76112 -15.57485 -15.21517 -15.03852 -14.81801 -14.48310 -14.44194 -14.38779 -14.06014 -14.00451 -13.59367 -13.33965 -13.12018 -13.03277 -12.99535 -12.97150 -12.78111 -12.44024 -12.21655 -11.97323 -11.95376 -11.84462 -11.81094 -11.60982 -11.43777 -11.42645 -11.09688 -10.84175 -10.70625 -9.78261 -9.43755 -8.36537 -6.40902 0.97084 1.25230 1.31118 1.44695 1.46789 1.55351 2.05331 2.28842 2.65381 2.98697 3.26821 3.35200 3.60123 3.70851 3.81417 3.88263 4.06339 4.09932 4.17801 4.23494 4.23619 4.29592 4.33095 4.35789 4.42851 4.57222 4.59039 4.60475 4.67527 4.74190 4.78825 4.88441 4.92017 5.06177 5.10785 5.14157 5.22434 5.23880 5.30295 5.37119 5.44759 5.53454 5.64320 5.76179 5.97772 6.16995 6.20822 6.59368 6.65817 7.13520 7.24444 8.79543 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.005919 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.039699 B = 4729.121278 C = 6039.325105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.465 3.535 4 O -0.502 6.502 5 C 0.052 3.948 6 N -0.500 5.500 7 C 0.039 3.961 8 C -0.106 4.106 9 C -0.121 4.121 10 C -0.089 4.089 11 C 0.113 3.887 12 C -0.138 4.138 13 C 0.496 3.504 14 O -0.582 6.582 15 N -0.616 5.616 16 C 0.145 3.855 17 C -0.009 4.009 18 C -0.530 4.530 19 H 0.042 0.958 20 C 0.016 3.984 21 N -0.943 5.943 22 Si 0.933 3.067 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.250 1.250 26 C 0.066 3.934 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.003 0.997 45 H 0.019 0.981 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 23.199 7.570 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.076 4.076 6 N -0.225 5.225 7 C -0.088 4.088 8 C -0.144 4.144 9 C -0.159 4.159 10 C -0.127 4.127 11 C 0.022 3.978 12 C -0.178 4.178 13 C 0.286 3.714 14 O -0.462 6.462 15 N -0.348 5.348 16 C 0.024 3.976 17 C -0.048 4.048 18 C -0.568 4.568 19 H 0.060 0.940 20 C -0.182 4.182 21 N -0.583 5.583 22 Si 0.757 3.243 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.174 1.174 26 C -0.058 4.058 27 H 0.086 0.914 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.164 0.836 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.037 0.963 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.256 23.018 8.143 24.975 hybrid contribution -0.640 -1.578 -1.012 1.981 sum -5.896 21.440 7.131 23.352 Atomic orbital electron populations 1.23585 0.74230 1.05571 1.03145 1.86572 1.25698 1.33422 1.83780 1.23608 0.92037 0.81351 0.72224 1.90584 1.67160 1.36038 1.45194 1.21700 0.88276 0.93123 1.04540 1.61610 1.14126 1.09468 1.37288 1.22449 1.01166 0.96571 0.88567 1.21512 0.97351 0.92684 1.02811 1.21669 0.94896 1.01825 0.97466 1.21490 1.02543 0.88815 0.99861 1.21574 0.85119 0.98364 0.92697 1.22566 1.05176 0.91540 0.98554 1.21721 0.76118 0.91196 0.82384 1.90712 1.54773 1.38984 1.61777 1.48672 1.66693 1.11183 1.08262 1.21199 0.96602 0.85949 0.93900 1.19711 0.95454 0.94644 0.94960 1.21259 0.94063 1.11070 1.30458 0.93964 1.25824 1.03739 0.94434 0.94222 1.70033 1.35926 1.17551 1.34822 0.85901 0.79942 0.78264 0.80235 1.18866 1.20731 1.17361 1.23124 1.02484 0.81608 0.98585 0.91437 0.85959 0.90755 0.91135 0.87549 0.90896 0.94536 0.91146 0.90319 0.89178 0.91536 0.89328 0.88060 0.87275 0.83639 0.89379 0.92552 0.97823 0.96310 0.92349 0.90666 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.38 -12.13 10.56 -51.31 -0.54 -12.67 16 3 C 0.47 14.58 7.65 71.24 0.54 15.13 16 4 O -0.50 -15.91 14.04 21.96 0.31 -15.60 16 5 C 0.05 1.56 4.16 85.56 0.36 1.92 16 6 N -0.50 -11.52 4.20 -851.06 -3.57 -15.10 16 7 C 0.04 0.84 4.89 86.31 0.42 1.26 16 8 C -0.11 -1.55 6.07 30.65 0.19 -1.36 16 9 C -0.12 -1.25 5.82 30.72 0.18 -1.07 16 10 C -0.09 -0.97 4.65 30.43 0.14 -0.83 16 11 C 0.11 2.08 0.71 4.06 0.00 2.08 16 12 C -0.14 -2.90 5.44 30.41 0.17 -2.74 16 13 C 0.50 16.21 6.08 87.93 0.53 16.75 16 14 O -0.58 -25.05 17.59 -3.04 -0.05 -25.11 16 15 N -0.62 -19.28 2.27 -818.60 -1.85 -21.13 16 16 C 0.15 5.72 5.88 86.38 0.51 6.23 16 17 C -0.01 -0.44 3.70 29.85 0.11 -0.33 16 18 C -0.53 -30.64 9.66 25.60 0.25 -30.40 16 19 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 20 C 0.02 0.93 5.47 84.66 0.46 1.40 16 21 N -0.94 -59.33 13.96 21.45 0.30 -59.03 16 22 Si 0.93 45.34 27.47 68.60 1.88 47.22 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 26 C 0.07 1.42 4.81 86.58 0.42 1.84 16 27 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.07 2.40 5.64 -2.39 -0.01 2.38 16 31 H 0.11 3.39 5.18 -2.39 -0.01 3.38 16 32 H 0.07 1.88 5.77 -2.39 -0.01 1.86 16 33 H 0.04 0.80 6.21 -2.39 -0.01 0.79 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.69 7.60 -2.39 -0.02 0.67 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.69 8.04 -2.39 -0.02 0.67 16 40 H 0.11 2.36 7.40 -2.39 -0.02 2.34 16 41 H 0.15 2.09 7.86 -2.39 -0.02 2.07 16 42 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.06 2.46 7.92 -2.39 -0.02 2.45 16 44 H 0.00 0.18 7.20 -2.39 -0.02 0.16 16 45 H 0.02 0.85 6.90 -2.38 -0.02 0.83 16 46 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 47 H 0.08 1.77 5.76 -2.38 -0.01 1.76 16 48 H 0.11 1.75 7.78 -2.39 -0.02 1.73 16 Total: -1.00 -77.49 367.08 2.84 -74.65 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.90 Total: 15.08 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.47 Total: 11.70 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -5.13 Total: -95.26 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.29 Total: -53.38 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -77.49 2.84 -74.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.992 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds