Wall clock time and date at job start Fri Apr 10 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00279 * 2 1 4 4 O 1.20829 * 119.99776 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00251 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47505 * 179.97438 * 5 3 2 7 7 N 1.46894 * 109.47597 * 180.02562 * 6 5 3 8 8 C 1.48632 * 110.99973 * 307.44844 * 7 6 5 9 9 C 1.55161 * 103.35770 * 200.85151 * 8 7 6 10 10 C 1.53594 * 102.66280 * 36.58691 * 9 8 7 11 11 C 1.53842 * 110.85094 * 217.70532 * 10 9 8 12 12 C 1.54707 * 101.41327 * 215.39714 * 11 10 9 13 13 N 1.46880 * 105.59339 * 24.53909 * 12 11 10 14 14 C 1.46499 * 124.36991 * 163.13892 * 13 12 11 15 15 C 1.53006 * 109.47230 * 89.99795 * 14 13 12 16 16 C 1.50702 * 109.47048 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47263 * 59.99594 * 20 18 16 22 22 H 1.48499 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46873 * 299.99925 * 20 18 16 24 24 C 1.34743 * 111.26010 * 343.14061 * 13 12 11 25 25 O 1.21280 * 125.13597 * 181.00962 * 24 13 12 26 26 C 1.48186 * 111.00187 * 189.99874 * 7 6 5 27 27 H 1.09000 * 109.46714 * 299.99958 * 1 2 3 28 28 H 1.08993 * 109.47075 * 60.00137 * 1 2 3 29 29 H 1.08999 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47042 * 59.99999 * 5 3 2 31 31 H 1.08999 * 109.47473 * 300.00399 * 5 3 2 32 32 H 1.09002 * 109.46956 * 59.99965 * 6 5 3 33 33 H 1.09003 * 109.46789 * 300.00241 * 6 5 3 34 34 H 1.09003 * 110.63959 * 319.32413 * 8 7 6 35 35 H 1.09007 * 110.63833 * 82.22099 * 8 7 6 36 36 H 1.09004 * 110.76976 * 278.28878 * 9 8 7 37 37 H 1.09001 * 110.77176 * 154.88232 * 9 8 7 38 38 H 1.08999 * 111.08821 * 97.36392 * 11 10 9 39 39 H 1.08999 * 111.04308 * 333.40731 * 11 10 9 40 40 H 1.09002 * 110.23692 * 265.48344 * 12 11 10 41 41 H 1.09004 * 110.23665 * 143.59615 * 12 11 10 42 42 H 1.08999 * 109.47659 * 210.00021 * 14 13 12 43 43 H 1.09005 * 109.47272 * 330.00238 * 14 13 12 44 44 H 1.09003 * 109.46791 * 300.00177 * 15 14 13 45 45 H 1.08996 * 109.46701 * 60.00031 * 15 14 13 46 46 H 0.97000 * 120.00315 * 180.02562 * 19 18 16 47 47 H 1.08997 * 110.01559 * 26.34704 * 26 7 6 48 48 H 1.08996 * 110.01947 * 264.94727 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7420 -0.0011 7 7 5.4672 2.8189 -0.0023 8 6 6.0441 2.0043 1.0990 9 6 7.4601 2.6098 1.2888 10 6 7.2210 4.1076 1.0468 11 6 8.4023 4.7349 0.2867 12 6 8.4624 6.1437 0.9232 13 7 7.8499 6.0036 2.2508 14 6 8.0004 6.9743 3.3377 15 6 6.8824 8.0153 3.2503 16 6 7.0369 9.0135 4.3687 17 1 7.8513 8.9155 5.0712 18 6 6.1385 10.0518 4.4949 19 7 5.1473 10.1713 3.6390 20 14 6.3304 11.2895 5.8807 21 1 7.6467 11.9665 5.7612 22 1 5.2453 12.2998 5.7959 23 1 6.2521 10.5866 7.1865 24 6 7.1318 4.8670 2.3401 25 8 6.5075 4.5107 3.3170 26 6 5.9264 4.2072 0.2374 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2363 0.8889 33 1 3.6102 3.2359 -0.8911 34 1 5.4537 2.1148 2.0086 35 1 6.1077 0.9556 0.8085 36 1 8.1552 2.2054 0.5530 37 1 7.8227 2.4349 2.3017 38 1 8.1930 4.7970 -0.7812 39 1 9.3239 4.1829 0.4714 40 1 7.8971 6.8543 0.3202 41 1 9.4979 6.4706 1.0182 42 1 7.9425 6.4586 4.2962 43 1 8.9668 7.4710 3.2501 44 1 6.9404 8.5311 2.2917 45 1 5.9161 7.5187 3.3378 46 1 4.5155 10.9020 3.7276 47 1 5.1740 4.7566 0.8031 48 1 6.1177 4.7062 -0.7126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273960863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:19 Heat of formation + Delta-G solvation = -116.620592 kcal Electronic energy + Delta-G solvation = -27996.124631 eV Core-core repulsion = 24050.954422 eV Total energy + Delta-G solvation = -3945.170210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03633 -40.64032 -38.15304 -36.77915 -36.02905 -34.41813 -33.08095 -31.51738 -30.05476 -29.03899 -28.12973 -27.52020 -25.13587 -24.45010 -23.06128 -22.04019 -21.54904 -20.38600 -20.24962 -18.55358 -17.95572 -16.98234 -16.82325 -16.65081 -16.23588 -15.87222 -15.34456 -15.13631 -14.69667 -14.52975 -14.32791 -14.16589 -13.57673 -13.48244 -13.44068 -12.97793 -12.80266 -12.64979 -12.55522 -12.36587 -12.33106 -12.04935 -11.75751 -11.53309 -11.45891 -11.33045 -11.22260 -11.08563 -10.94053 -10.84972 -10.82956 -10.68429 -10.62878 -9.99901 -9.85857 -9.36353 -9.11254 -8.60294 -8.37640 -8.03156 -6.02514 -4.06392 1.95238 2.38091 2.95394 3.32515 3.36753 3.38571 3.50889 3.87049 4.27576 4.38217 4.44543 4.45226 4.51374 4.72832 4.79254 4.80643 4.86479 4.89368 5.07239 5.17853 5.20514 5.25623 5.32833 5.33534 5.47924 5.50438 5.59466 5.68631 5.74383 5.74784 5.77451 5.86850 5.92098 5.96942 6.05593 6.09682 6.11873 6.44124 6.63023 6.79303 6.80119 6.98941 7.47606 7.49261 7.65348 7.83547 7.96626 8.32724 8.64717 9.00065 9.57664 11.08843 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.002788 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.152028 B =10042.085937 C =11667.741393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.503 6.503 5 C -0.112 4.112 6 C 0.054 3.946 7 N -0.512 5.512 8 C 0.027 3.973 9 C -0.097 4.097 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.610 5.610 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.523 3.477 25 O -0.529 6.529 26 C 0.061 3.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.262 0.738 47 H 0.056 0.944 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -21.230 -12.537 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.390 6.390 5 C -0.150 4.150 6 C -0.074 4.074 7 N -0.236 5.236 8 C -0.100 4.100 9 C -0.135 4.135 10 C -0.112 4.112 11 C -0.155 4.155 12 C -0.025 4.025 13 N -0.343 5.343 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C 0.309 3.691 25 O -0.406 6.406 26 C -0.067 4.067 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.622 -21.105 -12.501 24.538 hybrid contribution -0.584 1.289 1.506 2.066 sum 0.039 -19.817 -10.994 22.662 Atomic orbital electron populations 1.23272 0.76225 1.03665 1.02718 1.86496 1.23563 1.33562 1.84253 1.23771 0.92192 0.81336 0.72337 1.90716 1.67284 1.36269 1.44773 1.21410 0.87148 0.99955 1.06495 1.22111 0.88191 0.93880 1.03241 1.65023 1.07434 1.07987 1.43165 1.23390 0.95225 0.98104 0.93291 1.22302 0.97128 0.91618 1.02498 1.21587 0.97159 0.97113 0.95303 1.22702 0.97448 0.95196 1.00169 1.22122 0.98918 0.97218 0.84205 1.48642 1.49790 1.21875 1.13951 1.21817 1.00785 0.89439 0.87197 1.19397 0.93325 0.92446 0.97383 1.21044 1.12255 1.10276 1.12679 0.92531 1.25004 0.95113 0.97900 0.96244 1.69958 1.15056 1.31819 1.36264 0.86610 0.77669 0.80872 0.82571 1.20166 1.21239 1.20145 1.20213 0.78810 0.81705 0.88375 1.90694 1.42688 1.71594 1.35606 1.22676 0.94444 0.90161 0.99389 0.91789 0.91842 0.88084 0.86672 0.87458 0.93035 0.89406 0.92665 0.89638 0.89829 0.90410 0.88937 0.89930 0.91006 0.90541 0.91205 0.91578 0.96456 0.96200 0.92846 0.92531 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.49 10.57 -39.25 -0.41 -3.91 16 3 C 0.46 5.08 7.96 36.00 0.29 5.36 16 4 O -0.50 -7.24 15.73 -18.75 -0.29 -7.54 16 5 C -0.11 -0.99 5.47 -27.89 -0.15 -1.14 16 6 C 0.05 0.62 4.32 -3.83 -0.02 0.60 16 7 N -0.51 -5.76 5.41 -230.61 -1.25 -7.00 16 8 C 0.03 0.29 5.12 -1.72 -0.01 0.28 16 9 C -0.10 -1.07 6.02 -25.28 -0.15 -1.22 16 10 C -0.11 -1.41 0.77 -155.13 -0.12 -1.53 16 11 C -0.12 -1.20 6.12 -25.39 -0.16 -1.35 16 12 C 0.10 1.30 7.36 -2.94 -0.02 1.28 16 13 N -0.61 -11.04 2.94 -172.52 -0.51 -11.55 16 14 C 0.13 2.72 5.88 -4.04 -0.02 2.70 16 15 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.33 13.28 55.43 0.74 -26.60 16 20 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.52 9.63 6.48 -11.22 -0.07 9.56 16 25 O -0.53 -11.96 17.45 5.56 0.10 -11.86 16 26 C 0.06 0.80 6.06 -3.11 -0.02 0.78 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 0.83 6.79 -51.93 -0.35 0.48 16 32 H 0.05 0.72 7.78 -51.93 -0.40 0.31 16 33 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.06 0.70 7.98 -51.93 -0.41 0.29 16 35 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 36 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 38 H 0.09 0.76 7.44 -51.93 -0.39 0.37 16 39 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.57 7.95 -51.93 -0.41 1.16 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 47 H 0.06 0.91 7.18 -51.93 -0.37 0.54 16 48 H 0.09 1.05 7.31 -51.93 -0.38 0.67 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -35.91 389.27 -8.84 -44.75 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.11 Total: -2.21 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 0.05 Total: 3.15 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.02 Total: -45.14 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.61 Total: -23.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.91 -8.84 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273960863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.872 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds