Wall clock time and date at job start Fri Apr 10 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00279 * 2 1 4 4 O 1.20829 * 119.99776 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00251 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47505 * 179.97438 * 5 3 2 7 7 N 1.46894 * 109.47597 * 180.02562 * 6 5 3 8 8 C 1.48632 * 110.99973 * 307.44844 * 7 6 5 9 9 C 1.55161 * 103.35770 * 200.85151 * 8 7 6 10 10 C 1.53594 * 102.66280 * 36.58691 * 9 8 7 11 11 C 1.53842 * 110.85094 * 217.70532 * 10 9 8 12 12 C 1.54707 * 101.41327 * 215.39714 * 11 10 9 13 13 N 1.46880 * 105.59339 * 24.53909 * 12 11 10 14 14 C 1.46499 * 124.36991 * 163.13892 * 13 12 11 15 15 C 1.53006 * 109.47230 * 89.99795 * 14 13 12 16 16 C 1.50702 * 109.47048 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47263 * 59.99594 * 20 18 16 22 22 H 1.48499 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46873 * 299.99925 * 20 18 16 24 24 C 1.34743 * 111.26010 * 343.14061 * 13 12 11 25 25 O 1.21280 * 125.13597 * 181.00962 * 24 13 12 26 26 C 1.48186 * 111.00187 * 189.99874 * 7 6 5 27 27 H 1.09000 * 109.46714 * 299.99958 * 1 2 3 28 28 H 1.08993 * 109.47075 * 60.00137 * 1 2 3 29 29 H 1.08999 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47042 * 59.99999 * 5 3 2 31 31 H 1.08999 * 109.47473 * 300.00399 * 5 3 2 32 32 H 1.09002 * 109.46956 * 59.99965 * 6 5 3 33 33 H 1.09003 * 109.46789 * 300.00241 * 6 5 3 34 34 H 1.09003 * 110.63959 * 319.32413 * 8 7 6 35 35 H 1.09007 * 110.63833 * 82.22099 * 8 7 6 36 36 H 1.09004 * 110.76976 * 278.28878 * 9 8 7 37 37 H 1.09001 * 110.77176 * 154.88232 * 9 8 7 38 38 H 1.08999 * 111.08821 * 97.36392 * 11 10 9 39 39 H 1.08999 * 111.04308 * 333.40731 * 11 10 9 40 40 H 1.09002 * 110.23692 * 265.48344 * 12 11 10 41 41 H 1.09004 * 110.23665 * 143.59615 * 12 11 10 42 42 H 1.08999 * 109.47659 * 210.00021 * 14 13 12 43 43 H 1.09005 * 109.47272 * 330.00238 * 14 13 12 44 44 H 1.09003 * 109.46791 * 300.00177 * 15 14 13 45 45 H 1.08996 * 109.46701 * 60.00031 * 15 14 13 46 46 H 0.97000 * 120.00315 * 180.02562 * 19 18 16 47 47 H 1.08997 * 110.01559 * 26.34704 * 26 7 6 48 48 H 1.08996 * 110.01947 * 264.94727 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7420 -0.0011 7 7 5.4672 2.8189 -0.0023 8 6 6.0441 2.0043 1.0990 9 6 7.4601 2.6098 1.2888 10 6 7.2210 4.1076 1.0468 11 6 8.4023 4.7349 0.2867 12 6 8.4624 6.1437 0.9232 13 7 7.8499 6.0036 2.2508 14 6 8.0004 6.9743 3.3377 15 6 6.8824 8.0153 3.2503 16 6 7.0369 9.0135 4.3687 17 1 7.8513 8.9155 5.0712 18 6 6.1385 10.0518 4.4949 19 7 5.1473 10.1713 3.6390 20 14 6.3304 11.2895 5.8807 21 1 7.6467 11.9665 5.7612 22 1 5.2453 12.2998 5.7959 23 1 6.2521 10.5866 7.1865 24 6 7.1318 4.8670 2.3401 25 8 6.5075 4.5107 3.3170 26 6 5.9264 4.2072 0.2374 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2363 0.8889 33 1 3.6102 3.2359 -0.8911 34 1 5.4537 2.1148 2.0086 35 1 6.1077 0.9556 0.8085 36 1 8.1552 2.2054 0.5530 37 1 7.8227 2.4349 2.3017 38 1 8.1930 4.7970 -0.7812 39 1 9.3239 4.1829 0.4714 40 1 7.8971 6.8543 0.3202 41 1 9.4979 6.4706 1.0182 42 1 7.9425 6.4586 4.2962 43 1 8.9668 7.4710 3.2501 44 1 6.9404 8.5311 2.2917 45 1 5.9161 7.5187 3.3378 46 1 4.5155 10.9020 3.7276 47 1 5.1740 4.7566 0.8031 48 1 6.1177 4.7062 -0.7126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273960863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:18 Heat of formation + Delta-G solvation = -142.321497 kcal Electronic energy + Delta-G solvation = -27997.239106 eV Core-core repulsion = 24050.954422 eV Total energy + Delta-G solvation = -3946.284684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19521 -41.55717 -39.27907 -37.67836 -37.50295 -35.97365 -34.75821 -32.94932 -31.11776 -30.48289 -29.09449 -28.38103 -27.01346 -25.46955 -24.17430 -23.62215 -22.55731 -21.66345 -21.27458 -19.88576 -18.81434 -18.71849 -17.82621 -17.64748 -17.43129 -17.23712 -16.70661 -16.51634 -16.18450 -15.66052 -15.57352 -15.18941 -14.76158 -14.56168 -14.50213 -14.37206 -14.31861 -13.94303 -13.76973 -13.68745 -13.27538 -13.15542 -13.02998 -12.86650 -12.70873 -12.56528 -12.43615 -12.41136 -12.13222 -12.03133 -11.96643 -11.85559 -11.77127 -11.64144 -11.54167 -11.45767 -10.67370 -10.61475 -9.63843 -9.58752 -8.27686 -6.41440 1.08747 1.35588 1.40306 1.47612 1.50745 1.65024 2.11327 2.38155 2.89777 3.05603 3.27871 3.39319 3.45997 3.64731 3.91032 3.93665 3.99658 4.09585 4.25921 4.27307 4.28236 4.30805 4.35066 4.43785 4.47974 4.56789 4.60567 4.67756 4.71814 4.72921 4.80897 4.83151 4.83939 4.89917 5.00100 5.04735 5.16485 5.22562 5.29185 5.30966 5.40880 5.56126 5.65108 5.77944 5.82390 6.10386 6.26972 6.63651 6.74057 7.17805 7.28869 8.84403 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.002788 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.152028 B =10042.085937 C =11667.741393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.462 3.538 4 O -0.547 6.547 5 C -0.102 4.102 6 C 0.056 3.944 7 N -0.492 5.492 8 C 0.024 3.976 9 C -0.092 4.092 10 C -0.103 4.103 11 C -0.098 4.098 12 C 0.088 3.912 13 N -0.619 5.619 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.547 4.547 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.257 1.257 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.506 3.494 25 O -0.587 6.587 26 C 0.060 3.940 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.011 0.989 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.000 1.000 45 H -0.033 1.033 46 H 0.265 0.735 47 H 0.008 0.992 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -22.888 -14.113 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.438 6.438 5 C -0.139 4.139 6 C -0.073 4.073 7 N -0.216 5.216 8 C -0.103 4.103 9 C -0.130 4.130 10 C -0.107 4.107 11 C -0.135 4.135 12 C -0.034 4.034 13 N -0.350 5.350 14 C 0.020 3.980 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.796 3.204 21 H -0.181 1.181 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.294 3.706 25 O -0.468 6.468 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.140 0.860 32 H 0.030 0.970 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.018 0.982 45 H -0.015 1.015 46 H 0.073 0.927 47 H 0.027 0.973 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.282 -22.792 -14.117 27.010 hybrid contribution -1.495 1.792 1.998 3.072 sum 1.787 -21.000 -12.119 24.312 Atomic orbital electron populations 1.23545 0.74945 1.05804 1.02298 1.86491 1.24867 1.32560 1.83683 1.24202 0.93006 0.81093 0.71038 1.90706 1.68343 1.37724 1.46985 1.21402 0.85722 0.98094 1.08686 1.22038 0.88342 0.95702 1.01185 1.65135 1.06956 1.06717 1.42742 1.23534 0.94712 1.00105 0.91968 1.22391 0.97862 0.89710 1.03008 1.21608 0.98484 0.98213 0.92354 1.22799 0.97054 0.92500 1.01128 1.22506 0.99749 0.99591 0.81556 1.48785 1.50069 1.20993 1.15154 1.21372 0.99777 0.88808 0.88077 1.19204 0.92769 0.93194 0.96198 1.21527 1.12786 1.10793 1.13374 0.91331 1.26074 0.94513 1.00263 0.99113 1.70116 1.16059 1.32763 1.38447 0.85396 0.78465 0.77894 0.78673 1.18104 1.20833 1.19484 1.21318 0.77438 0.82122 0.89673 1.90643 1.44777 1.73042 1.38300 1.22738 0.93381 0.91089 0.99631 0.92673 0.91915 0.84649 0.83361 0.85951 0.97044 0.89764 0.95796 0.85701 0.85707 0.91773 0.85662 0.86912 0.91640 0.87915 0.93073 0.88737 0.98187 1.01503 0.92680 0.97336 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.58 10.57 -51.38 -0.54 -7.12 16 3 C 0.46 10.17 7.96 71.23 0.57 10.73 16 4 O -0.55 -16.59 15.73 21.96 0.35 -16.24 16 5 C -0.10 -1.67 5.47 29.85 0.16 -1.51 16 6 C 0.06 1.31 4.32 86.30 0.37 1.68 16 7 N -0.49 -10.49 5.41 -883.52 -4.78 -15.26 16 8 C 0.02 0.48 5.12 86.71 0.44 0.92 16 9 C -0.09 -1.79 6.02 31.54 0.19 -1.60 16 10 C -0.10 -2.57 0.77 -52.59 -0.04 -2.61 16 11 C -0.10 -1.61 6.12 31.46 0.19 -1.42 16 12 C 0.09 2.15 7.36 86.89 0.64 2.78 16 13 N -0.62 -22.86 2.94 -818.13 -2.41 -25.27 16 14 C 0.14 6.24 5.88 86.38 0.51 6.75 16 15 C 0.02 1.37 5.30 29.85 0.16 1.53 16 16 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 17 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -59.40 13.28 21.45 0.28 -59.12 16 20 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.51 19.46 6.48 87.52 0.57 20.03 16 25 O -0.59 -28.71 17.45 -3.03 -0.05 -28.76 16 26 C 0.06 1.57 6.06 86.06 0.52 2.09 16 27 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.12 1.69 6.79 -2.39 -0.02 1.67 16 32 H 0.01 0.35 7.78 -2.39 -0.02 0.33 16 33 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 34 H 0.02 0.63 7.98 -2.39 -0.02 0.61 16 35 H 0.13 1.53 7.69 -2.38 -0.02 1.51 16 36 H 0.12 1.47 7.84 -2.38 -0.02 1.45 16 37 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 38 H 0.13 1.36 7.44 -2.39 -0.02 1.35 16 39 H 0.11 1.29 7.88 -2.39 -0.02 1.27 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 2.42 7.95 -2.39 -0.02 2.40 16 43 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 44 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H -0.03 -2.21 8.14 -2.39 -0.02 -2.23 16 46 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.01 0.29 7.18 -2.39 -0.02 0.28 16 48 H 0.12 2.45 7.31 -2.39 -0.02 2.43 16 Total: -1.00 -86.66 389.27 1.98 -84.68 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.93 Total: 10.28 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.17 Total: 9.34 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -6.90 Total: -99.66 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.25 Total: -52.13 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -86.66 1.98 -84.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273960863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.643 kcal (2) G-P(sol) polarization free energy of solvation -86.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds