Wall clock time and date at job start Fri Apr 10 2020 18:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99635 * 2 1 4 4 O 1.20823 * 120.00376 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99844 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47176 * 179.97438 * 5 3 2 7 7 N 1.46907 * 109.47068 * 185.03672 * 6 5 3 8 8 C 1.48057 * 110.99895 * 184.19473 * 7 6 5 9 9 C 1.54255 * 106.83297 * 146.61192 * 8 7 6 10 10 C 1.54352 * 104.82831 * 358.54588 * 9 8 7 11 11 H 1.09004 * 110.04720 * 95.63072 * 10 9 8 12 12 C 1.48926 * 110.99708 * 301.21355 * 7 6 5 13 13 H 1.08998 * 112.55553 * 78.50137 * 12 7 6 14 14 C 1.53100 * 107.98640 * 314.47885 * 12 7 6 15 15 C 1.52924 * 109.19067 * 184.13223 * 14 12 7 16 16 C 1.50308 * 109.41861 * 52.12910 * 15 14 12 17 17 O 1.21281 * 118.68049 * 159.21540 * 16 15 14 18 18 N 1.33332 * 122.64201 * 339.19203 * 16 15 14 19 19 C 1.46497 * 117.36052 * 180.28100 * 18 16 15 20 20 C 1.53002 * 109.46998 * 90.00167 * 19 18 16 21 21 C 1.50701 * 109.47384 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99958 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00402 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00323 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99664 * 0.02562 * 23 21 20 26 26 H 1.48509 * 109.46979 * 89.99802 * 25 23 21 27 27 H 1.48498 * 109.47308 * 209.99652 * 25 23 21 28 28 H 1.48494 * 109.47504 * 330.00061 * 25 23 21 29 29 H 1.09005 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47692 * 299.99915 * 1 2 3 31 31 H 1.09001 * 109.47174 * 60.00464 * 1 2 3 32 32 H 1.09003 * 109.47167 * 60.00437 * 5 3 2 33 33 H 1.09001 * 109.47293 * 299.99995 * 5 3 2 34 34 H 1.08998 * 109.47008 * 65.03786 * 6 5 3 35 35 H 1.08998 * 109.47098 * 305.03711 * 6 5 3 36 36 H 1.09004 * 109.98609 * 27.26496 * 8 7 6 37 37 H 1.09004 * 109.98436 * 265.95799 * 8 7 6 38 38 H 1.09001 * 110.36417 * 239.70840 * 9 8 7 39 39 H 1.08998 * 110.46265 * 117.43690 * 9 8 7 40 40 H 1.09004 * 109.52005 * 64.22151 * 14 12 7 41 41 H 1.08995 * 109.52776 * 304.04874 * 14 12 7 42 42 H 1.08998 * 109.48422 * 172.11240 * 15 14 12 43 43 H 1.08999 * 109.47863 * 292.14824 * 15 14 12 44 44 H 1.08998 * 109.47514 * 209.99975 * 19 18 16 45 45 H 1.08997 * 109.47543 * 330.00498 * 19 18 16 46 46 H 1.09002 * 109.47450 * 299.99857 * 20 19 18 47 47 H 1.09002 * 109.47048 * 60.00105 * 20 19 18 48 48 H 0.96993 * 120.00423 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4620 2.8205 -0.1212 8 6 5.9280 4.2225 -0.0248 9 6 7.3047 4.1889 0.6702 10 6 7.5525 2.6980 0.9838 11 1 8.1551 2.2457 0.1961 12 6 6.1295 2.1009 0.9988 13 1 6.1378 1.0204 0.8555 14 6 5.4290 2.4989 2.3006 15 6 6.1582 1.8555 3.4809 16 6 7.6241 2.1770 3.3980 17 8 8.2959 2.0946 4.4043 18 7 8.2158 2.5488 2.2624 19 6 9.6529 2.8286 2.3122 20 6 10.4328 1.5444 2.0229 21 6 11.9112 1.8322 2.0735 22 1 12.2597 2.8311 2.2908 23 6 12.8189 0.8202 1.8435 24 7 14.1090 1.0713 1.8882 25 14 12.2161 -0.9076 1.4685 26 1 12.0451 -1.0647 0.0016 27 1 13.2095 -1.8960 1.9596 28 1 10.9144 -1.1357 2.1457 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9563 0.7807 -0.8892 33 1 3.9556 0.7810 0.8908 34 1 3.6867 3.2141 0.9310 35 1 3.5376 3.2573 -0.8421 36 1 5.2255 4.8087 0.5679 37 1 6.0243 4.6525 -1.0218 38 1 7.2789 4.7711 1.5914 39 1 8.0778 4.5700 0.0030 40 1 4.3956 2.1529 2.2787 41 1 5.4485 3.5834 2.4080 42 1 5.7529 2.2450 4.4147 43 1 6.0207 0.7747 3.4476 44 1 9.9027 3.5815 1.5647 45 1 9.9170 3.1985 3.3029 46 1 10.1831 0.7914 2.7704 47 1 10.1688 1.1744 1.0322 48 1 14.7476 0.3595 1.7260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273961385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:29 Heat of formation + Delta-G solvation = -133.547108 kcal Electronic energy + Delta-G solvation = -28723.686883 eV Core-core repulsion = 24777.782684 eV Total energy + Delta-G solvation = -3945.904198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.28374 -41.43412 -39.87026 -37.63327 -36.95043 -35.35261 -34.34063 -33.94521 -31.88572 -30.32314 -29.23121 -28.31481 -27.04563 -25.03868 -24.87933 -23.02132 -22.66492 -21.74658 -20.84291 -19.41866 -18.97693 -18.56391 -17.91593 -17.80355 -17.56809 -17.27693 -16.80193 -16.48050 -16.12743 -15.69523 -15.52037 -15.29804 -14.80930 -14.76459 -14.49265 -14.42712 -14.30128 -13.88119 -13.62349 -13.45633 -13.36036 -13.00833 -12.91574 -12.88043 -12.72452 -12.54622 -12.32249 -12.23383 -12.07307 -11.93454 -11.82439 -11.76713 -11.75758 -11.61704 -11.53858 -11.49891 -10.78602 -10.58412 -9.65058 -9.40564 -8.31708 -6.36329 1.18131 1.31964 1.36163 1.47807 1.65730 1.72748 2.03102 2.34279 2.95698 3.03286 3.37482 3.48793 3.63835 3.74509 3.81372 4.03347 4.08998 4.11400 4.16801 4.21389 4.32014 4.35021 4.36401 4.40698 4.43748 4.56207 4.57497 4.72578 4.73700 4.74815 4.81616 4.83761 4.86889 4.89366 4.99942 5.02954 5.06248 5.21593 5.26876 5.36426 5.41046 5.49305 5.66276 5.75728 5.95559 6.22623 6.60319 6.69934 6.72439 7.22335 7.28638 8.84851 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002977 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.429140 B = 9401.703689 C = 9810.437359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.113 4.113 6 C 0.059 3.941 7 N -0.505 5.505 8 C 0.046 3.954 9 C -0.141 4.141 10 C 0.135 3.865 11 H 0.093 0.907 12 C 0.059 3.941 13 H 0.123 0.877 14 C -0.143 4.143 15 C -0.121 4.121 16 C 0.499 3.501 17 O -0.604 6.604 18 N -0.588 5.588 19 C 0.130 3.870 20 C -0.009 4.009 21 C -0.531 4.531 22 H 0.035 0.965 23 C 0.007 3.993 24 N -0.947 5.947 25 Si 0.951 3.049 26 H -0.255 1.255 27 H -0.283 1.283 28 H -0.259 1.259 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.001 0.999 47 H 0.027 0.973 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.035 -0.167 -7.389 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.150 4.150 6 C -0.069 4.069 7 N -0.228 5.228 8 C -0.082 4.082 9 C -0.180 4.180 10 C 0.031 3.969 11 H 0.111 0.889 12 C -0.049 4.049 13 H 0.141 0.859 14 C -0.181 4.181 15 C -0.161 4.161 16 C 0.290 3.710 17 O -0.486 6.486 18 N -0.318 5.318 19 C 0.007 3.993 20 C -0.047 4.047 21 C -0.570 4.570 22 H 0.054 0.946 23 C -0.190 4.190 24 N -0.588 5.588 25 Si 0.774 3.226 26 H -0.180 1.180 27 H -0.209 1.209 28 H -0.184 1.184 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.045 0.955 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.684 -0.203 -7.445 31.575 hybrid contribution 0.324 -0.004 0.902 0.959 sum -30.359 -0.207 -6.543 31.057 Atomic orbital electron populations 1.23514 0.74990 1.05529 1.02472 1.86515 1.24847 1.33139 1.83683 1.24076 0.92766 0.81002 0.71087 1.90675 1.68174 1.37251 1.46909 1.21478 0.85884 0.99433 1.08238 1.22046 0.87321 0.94919 1.02621 1.65048 1.05849 1.10907 1.41035 1.22879 0.94322 0.89319 1.01666 1.22863 0.98392 0.95582 1.01180 1.21680 0.94032 0.96995 0.84185 0.88929 1.23141 0.91181 1.00701 0.89889 0.85905 1.22258 1.00954 1.01665 0.93263 1.21593 0.88214 1.04564 1.01723 1.21059 0.91931 0.75967 0.82071 1.90726 1.66898 1.54851 1.36138 1.47233 1.09385 1.66006 1.09127 1.21250 0.78946 0.97796 1.01320 1.19650 0.93797 0.95167 0.96071 1.21288 0.91135 0.96436 1.48101 0.94625 1.25961 0.94751 1.03765 0.94503 1.70048 1.02372 1.34918 1.51420 0.85645 0.78587 0.78619 0.79700 1.17963 1.20887 1.18371 0.85454 0.91995 0.91986 0.85154 0.85801 0.92874 0.89689 0.92336 0.88646 0.91480 0.89956 0.87709 0.91045 0.87425 0.86430 0.90082 0.93049 0.98043 0.95517 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.37 -4.96 10.57 -51.36 -0.54 -5.51 16 3 C 0.47 6.84 7.96 71.24 0.57 7.41 16 4 O -0.54 -11.03 15.67 21.97 0.34 -10.69 16 5 C -0.11 -1.13 5.27 29.85 0.16 -0.97 16 6 C 0.06 0.72 3.66 86.30 0.32 1.03 16 7 N -0.50 -7.14 5.35 -857.27 -4.58 -11.72 16 8 C 0.05 0.67 5.98 86.51 0.52 1.18 16 9 C -0.14 -2.74 5.76 31.48 0.18 -2.56 16 10 C 0.14 3.16 3.17 46.22 0.15 3.31 16 11 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 12 C 0.06 0.96 2.52 45.01 0.11 1.07 16 13 H 0.12 1.75 7.67 -2.39 -0.02 1.73 16 14 C -0.14 -2.09 3.87 30.60 0.12 -1.97 16 15 C -0.12 -2.45 6.07 29.70 0.18 -2.27 16 16 C 0.50 16.60 7.47 87.76 0.66 17.26 16 17 O -0.60 -27.01 16.19 -3.03 -0.05 -27.06 16 18 N -0.59 -18.87 2.43 -799.26 -1.94 -20.81 16 19 C 0.13 5.38 5.02 86.38 0.43 5.82 16 20 C -0.01 -0.42 4.35 29.85 0.13 -0.29 16 21 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 22 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 23 C 0.01 0.45 5.47 84.66 0.46 0.91 16 24 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 25 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 29 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 0.88 6.10 -2.39 -0.01 0.87 16 34 H 0.05 0.67 6.14 -2.39 -0.01 0.65 16 35 H 0.08 1.16 7.95 -2.39 -0.02 1.14 16 36 H 0.06 0.77 7.36 -2.38 -0.02 0.75 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.07 1.42 7.97 -2.39 -0.02 1.40 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.05 5.43 -2.38 -0.01 1.04 16 41 H 0.07 1.13 6.57 -2.39 -0.02 1.12 16 42 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 3.10 7.82 -2.39 -0.02 3.08 16 45 H 0.05 2.43 7.14 -2.39 -0.02 2.41 16 46 H 0.00 0.06 7.20 -2.39 -0.02 0.05 16 47 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -80.22 373.61 1.73 -78.49 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.89 Total: 9.91 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.42 Total: 0.04 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -6.22 Total: -92.64 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.25 Total: -43.25 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -80.22 1.73 -78.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273961385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.057 kcal (2) G-P(sol) polarization free energy of solvation -80.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds