Wall clock time and date at job start Fri Apr 10 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20760 * 120.00233 * 2 1 4 4 C 1.50699 * 120.00089 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.47105 * 320.00500 * 4 2 1 6 6 C 1.53002 * 109.46835 * 80.00143 * 4 2 1 7 7 N 1.46897 * 109.47356 * 200.00248 * 4 2 1 8 8 C 1.48577 * 111.00240 * 183.39942 * 7 4 2 9 9 C 1.55043 * 103.28929 * 200.56209 * 8 7 4 10 10 C 1.54123 * 102.80388 * 37.02085 * 9 8 7 11 11 C 1.48042 * 110.99990 * 65.98204 * 7 4 2 12 12 C 1.52444 * 110.11550 * 219.03072 * 10 9 8 13 13 N 1.46196 * 109.94555 * 286.18016 * 12 10 9 14 14 C 1.46502 * 118.77450 * 162.44704 * 13 12 10 15 15 C 1.53004 * 109.46996 * 270.02288 * 14 13 12 16 16 C 1.50698 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99930 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46779 * 119.99953 * 20 18 16 23 23 H 1.48496 * 109.47494 * 239.99762 * 20 18 16 24 24 C 1.33849 * 122.45436 * 342.46421 * 13 12 10 25 25 O 1.21280 * 118.69542 * 182.37528 * 24 13 12 26 26 C 1.50298 * 122.60509 * 2.40488 * 24 13 12 27 27 O 1.42406 * 110.04732 * 97.51488 * 10 9 8 28 28 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00656 * 1 2 3 30 30 H 1.09003 * 109.46762 * 60.00120 * 1 2 3 31 31 H 1.09005 * 109.47141 * 185.74784 * 6 4 2 32 32 H 1.08994 * 109.47597 * 305.75076 * 6 4 2 33 33 H 1.09001 * 109.47179 * 65.75163 * 6 4 2 34 34 H 1.09009 * 110.65033 * 319.00948 * 8 7 4 35 35 H 1.08999 * 110.65854 * 81.94468 * 8 7 4 36 36 H 1.08994 * 110.74372 * 278.69558 * 9 8 7 37 37 H 1.08996 * 110.74423 * 155.34680 * 9 8 7 38 38 H 1.08999 * 109.97660 * 26.38311 * 11 7 4 39 39 H 1.09000 * 109.97792 * 265.10207 * 11 7 4 40 40 H 1.08999 * 109.38844 * 166.03483 * 12 10 9 41 41 H 1.08995 * 109.39005 * 46.32240 * 12 10 9 42 42 H 1.09000 * 109.46821 * 30.01477 * 14 13 12 43 43 H 1.08998 * 109.47377 * 150.01996 * 14 13 12 44 44 H 1.09007 * 109.46718 * 299.99978 * 15 14 13 45 45 H 1.08998 * 109.47296 * 59.99658 * 15 14 13 46 46 H 0.96995 * 120.00147 * 179.97438 * 19 18 16 47 47 H 1.08998 * 109.40201 * 103.67591 * 26 24 13 48 48 H 1.09002 * 109.40216 * 223.50387 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2986 -1.8726 -1.4198 7 7 3.6324 -1.0783 0.4742 8 6 4.4312 -2.3295 0.4113 9 6 5.5941 -2.0600 1.4007 10 6 4.9071 -1.2616 2.5259 11 6 3.6413 -0.6643 1.8955 12 6 5.8297 -0.1536 3.0211 13 7 6.9075 -0.7249 3.8268 14 6 8.1054 0.0810 4.0755 15 6 9.1303 -0.1738 2.9684 16 6 10.3623 0.6556 3.2238 17 1 10.4094 1.3004 4.0890 18 6 11.4293 0.5914 2.3530 19 7 11.3722 -0.1941 1.2998 20 14 12.9561 1.6201 2.6693 21 1 12.7706 2.4127 3.9113 22 1 14.1318 0.7262 2.8241 23 1 13.1801 2.5386 1.5242 24 6 6.8408 -1.9570 4.3456 25 8 7.7555 -2.3467 5.0401 26 6 5.6776 -2.8768 4.1011 27 8 4.5648 -2.1297 3.6016 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7531 -2.8632 -1.4032 32 1 1.2833 -1.9452 -1.8094 33 1 2.8866 -1.2137 -2.0587 34 1 3.8366 -3.1820 0.7398 35 1 4.8111 -2.4929 -0.5972 36 1 6.3745 -1.4652 0.9263 37 1 5.9997 -2.9963 1.7839 38 1 2.7560 -1.0497 2.4012 39 1 3.6674 0.4231 1.9666 40 1 5.2582 0.5493 3.6272 41 1 6.2561 0.3712 2.1662 42 1 7.8368 1.1373 4.0858 43 1 8.5350 -0.1942 5.0387 44 1 9.3988 -1.2303 2.9580 45 1 8.7007 0.1014 2.0052 46 1 12.1227 -0.2390 0.6870 47 1 5.9622 -3.6342 3.3707 48 1 5.3973 -3.3625 5.0358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273980458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:33 Heat of formation + Delta-G solvation = -95.970084 kcal Electronic energy + Delta-G solvation = -29059.570991 eV Core-core repulsion = 25115.296255 eV Total energy + Delta-G solvation = -3944.274736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.18174 -39.97199 -38.52276 -36.83127 -35.44095 -33.52935 -32.96128 -30.75942 -30.01818 -29.97923 -29.03490 -27.33247 -25.33140 -24.53661 -24.39805 -21.82406 -21.50054 -20.44196 -19.54668 -18.37644 -17.56072 -16.82120 -16.64264 -16.40838 -15.97573 -15.75896 -15.24020 -15.15125 -15.03463 -14.50252 -14.27604 -14.03534 -13.91237 -13.50935 -13.41229 -13.01819 -12.95261 -12.69661 -12.64895 -12.48920 -12.30414 -12.28853 -12.13201 -11.99298 -11.60161 -11.52643 -11.26556 -11.24296 -10.97352 -10.85875 -10.67006 -10.19644 -9.89304 -9.85677 -9.75692 -9.28709 -8.96469 -8.69947 -8.35049 -8.08269 -6.00252 -4.02926 1.70622 2.88946 3.19283 3.32191 3.32778 3.40182 3.44711 3.54851 3.91808 4.31138 4.40155 4.47086 4.51540 4.64116 4.67126 4.78874 4.82072 5.01569 5.03993 5.06034 5.14370 5.18728 5.21145 5.26466 5.36277 5.39894 5.47520 5.56490 5.59205 5.63278 5.66484 5.70043 5.78605 5.91097 6.04072 6.11434 6.41525 6.54331 6.61931 6.73447 6.86609 6.95343 7.31516 7.60000 7.70745 7.93802 7.99436 8.35816 8.52673 9.03314 9.60947 11.11284 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003232 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.609070 B = 8661.546153 C = 9566.554016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.354 3.646 3 O -0.431 6.431 4 C 0.024 3.976 5 H 0.071 0.929 6 C -0.140 4.140 7 N -0.496 5.496 8 C 0.041 3.959 9 C -0.153 4.153 10 C 0.094 3.906 11 C 0.055 3.945 12 C 0.101 3.899 13 N -0.595 5.595 14 C 0.111 3.889 15 C 0.016 3.984 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.480 3.520 25 O -0.541 6.541 26 C 0.049 3.951 27 O -0.365 6.365 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.020 0.980 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.089 0.911 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.215 -5.428 -3.967 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.226 3.774 3 O -0.301 6.301 4 C -0.086 4.086 5 H 0.088 0.912 6 C -0.198 4.198 7 N -0.221 5.221 8 C -0.086 4.086 9 C -0.191 4.191 10 C 0.054 3.946 11 C -0.073 4.073 12 C -0.023 4.023 13 N -0.327 5.327 14 C -0.009 4.009 15 C -0.022 4.022 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.267 3.733 25 O -0.419 6.419 26 C -0.031 4.031 27 O -0.284 6.284 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.106 0.894 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.291 -4.712 -4.015 25.068 hybrid contribution 0.678 -0.209 0.437 0.833 sum -23.613 -4.921 -3.578 24.385 Atomic orbital electron populations 1.22265 0.94297 1.04530 1.04916 1.24566 0.91485 0.89962 0.71355 1.90443 1.71716 1.34478 1.33479 1.22422 0.90583 0.96429 0.99192 0.91160 1.21735 1.02738 1.01696 0.93612 1.64884 1.10079 1.29127 1.18006 1.23251 0.94119 0.90588 1.00620 1.23203 0.98517 1.01564 0.95780 1.22171 0.94963 0.90328 0.87155 1.22748 0.95631 1.01687 0.87246 1.21991 0.88314 0.95498 0.96531 1.47709 1.19326 1.15244 1.50445 1.21962 0.84002 0.92814 1.02130 1.19349 0.92455 0.97776 0.92614 1.21117 1.00075 1.25134 1.09468 0.92476 1.24991 0.98631 0.95561 0.95098 1.69978 1.31510 1.38248 1.13472 0.86502 0.83012 0.80109 0.78179 1.19675 1.20993 1.20991 1.20672 0.88853 0.83131 0.80658 1.90748 1.38892 1.73666 1.38617 1.22867 0.85016 0.93673 1.01499 1.87982 1.32860 1.57164 1.50396 0.90150 0.88924 0.88936 0.91214 0.91452 0.90876 0.93249 0.89192 0.88385 0.89813 0.92037 0.88144 0.91181 0.88678 0.91729 0.90525 0.96149 0.96593 0.93043 0.89375 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 10.33 36.01 0.37 -0.64 16 2 C 0.35 3.11 5.96 -29.04 -0.17 2.94 16 3 O -0.43 -5.63 16.60 6.00 0.10 -5.54 16 4 C 0.02 0.19 2.05 -68.87 -0.14 0.05 16 5 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 6 C -0.14 -0.91 8.79 37.16 0.33 -0.58 16 7 N -0.50 -5.38 4.77 -223.97 -1.07 -6.45 16 8 C 0.04 0.42 5.31 -1.82 -0.01 0.41 16 9 C -0.15 -1.95 5.84 -25.06 -0.15 -2.10 16 10 C 0.09 1.22 0.98 -90.05 -0.09 1.13 16 11 C 0.05 0.62 5.27 -2.93 -0.02 0.61 16 12 C 0.10 1.51 5.07 -4.49 -0.02 1.49 16 13 N -0.59 -11.06 2.80 -174.71 -0.49 -11.55 16 14 C 0.11 2.44 5.26 -4.04 -0.02 2.42 16 15 C 0.02 0.42 5.29 -27.88 -0.15 0.27 16 16 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.48 8.99 7.41 -11.59 -0.09 8.90 16 25 O -0.54 -12.38 16.34 5.56 0.09 -12.29 16 26 C 0.05 0.66 6.40 35.81 0.23 0.89 16 27 O -0.37 -4.80 10.30 -35.23 -0.36 -5.16 16 28 H 0.08 0.23 8.00 -51.93 -0.42 -0.19 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 7.19 -51.93 -0.37 0.03 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.44 8.02 -51.92 -0.42 0.03 16 35 H 0.09 0.86 7.78 -51.93 -0.40 0.46 16 36 H 0.10 1.47 7.66 -51.93 -0.40 1.07 16 37 H 0.08 1.06 5.66 -51.93 -0.29 0.77 16 38 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 39 H 0.10 1.22 7.29 -51.93 -0.38 0.84 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.10 1.50 7.83 -51.93 -0.41 1.10 16 42 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 43 H 0.08 1.80 7.22 -51.93 -0.38 1.42 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.09 1.08 6.31 -51.93 -0.33 0.76 16 48 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -35.62 380.98 -8.53 -44.15 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.93 Total: -1.62 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.33 Total: 2.13 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.82 Total: -44.46 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.17 Total: -22.98 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.62 -8.53 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273980458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.821 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds