Wall clock time and date at job start Fri Apr 10 2020 18:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20760 * 120.00233 * 2 1 4 4 C 1.50699 * 120.00089 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.47105 * 320.00500 * 4 2 1 6 6 C 1.53002 * 109.46835 * 80.00143 * 4 2 1 7 7 N 1.46897 * 109.47356 * 200.00248 * 4 2 1 8 8 C 1.48577 * 111.00240 * 183.39942 * 7 4 2 9 9 C 1.55043 * 103.28929 * 200.56209 * 8 7 4 10 10 C 1.54123 * 102.80388 * 37.02085 * 9 8 7 11 11 C 1.48042 * 110.99990 * 65.98204 * 7 4 2 12 12 C 1.52444 * 110.11550 * 219.03072 * 10 9 8 13 13 N 1.46196 * 109.94555 * 286.18016 * 12 10 9 14 14 C 1.46502 * 118.77450 * 162.44704 * 13 12 10 15 15 C 1.53004 * 109.46996 * 270.02288 * 14 13 12 16 16 C 1.50698 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99930 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46779 * 119.99953 * 20 18 16 23 23 H 1.48496 * 109.47494 * 239.99762 * 20 18 16 24 24 C 1.33849 * 122.45436 * 342.46421 * 13 12 10 25 25 O 1.21280 * 118.69542 * 182.37528 * 24 13 12 26 26 C 1.50298 * 122.60509 * 2.40488 * 24 13 12 27 27 O 1.42406 * 110.04732 * 97.51488 * 10 9 8 28 28 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00656 * 1 2 3 30 30 H 1.09003 * 109.46762 * 60.00120 * 1 2 3 31 31 H 1.09005 * 109.47141 * 185.74784 * 6 4 2 32 32 H 1.08994 * 109.47597 * 305.75076 * 6 4 2 33 33 H 1.09001 * 109.47179 * 65.75163 * 6 4 2 34 34 H 1.09009 * 110.65033 * 319.00948 * 8 7 4 35 35 H 1.08999 * 110.65854 * 81.94468 * 8 7 4 36 36 H 1.08994 * 110.74372 * 278.69558 * 9 8 7 37 37 H 1.08996 * 110.74423 * 155.34680 * 9 8 7 38 38 H 1.08999 * 109.97660 * 26.38311 * 11 7 4 39 39 H 1.09000 * 109.97792 * 265.10207 * 11 7 4 40 40 H 1.08999 * 109.38844 * 166.03483 * 12 10 9 41 41 H 1.08995 * 109.39005 * 46.32240 * 12 10 9 42 42 H 1.09000 * 109.46821 * 30.01477 * 14 13 12 43 43 H 1.08998 * 109.47377 * 150.01996 * 14 13 12 44 44 H 1.09007 * 109.46718 * 299.99978 * 15 14 13 45 45 H 1.08998 * 109.47296 * 59.99658 * 15 14 13 46 46 H 0.96995 * 120.00147 * 179.97438 * 19 18 16 47 47 H 1.08998 * 109.40201 * 103.67591 * 26 24 13 48 48 H 1.09002 * 109.40216 * 223.50387 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2986 -1.8726 -1.4198 7 7 3.6324 -1.0783 0.4742 8 6 4.4312 -2.3295 0.4113 9 6 5.5941 -2.0600 1.4007 10 6 4.9071 -1.2616 2.5259 11 6 3.6413 -0.6643 1.8955 12 6 5.8297 -0.1536 3.0211 13 7 6.9075 -0.7249 3.8268 14 6 8.1054 0.0810 4.0755 15 6 9.1303 -0.1738 2.9684 16 6 10.3623 0.6556 3.2238 17 1 10.4094 1.3004 4.0890 18 6 11.4293 0.5914 2.3530 19 7 11.3722 -0.1941 1.2998 20 14 12.9561 1.6201 2.6693 21 1 12.7706 2.4127 3.9113 22 1 14.1318 0.7262 2.8241 23 1 13.1801 2.5386 1.5242 24 6 6.8408 -1.9570 4.3456 25 8 7.7555 -2.3467 5.0401 26 6 5.6776 -2.8768 4.1011 27 8 4.5648 -2.1297 3.6016 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7531 -2.8632 -1.4032 32 1 1.2833 -1.9452 -1.8094 33 1 2.8866 -1.2137 -2.0587 34 1 3.8366 -3.1820 0.7398 35 1 4.8111 -2.4929 -0.5972 36 1 6.3745 -1.4652 0.9263 37 1 5.9997 -2.9963 1.7839 38 1 2.7560 -1.0497 2.4012 39 1 3.6674 0.4231 1.9666 40 1 5.2582 0.5493 3.6272 41 1 6.2561 0.3712 2.1662 42 1 7.8368 1.1373 4.0858 43 1 8.5350 -0.1942 5.0387 44 1 9.3988 -1.2303 2.9580 45 1 8.7007 0.1014 2.0052 46 1 12.1227 -0.2390 0.6870 47 1 5.9622 -3.6342 3.3707 48 1 5.3973 -3.3625 5.0358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273980458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:31 Heat of formation + Delta-G solvation = -122.119174 kcal Electronic energy + Delta-G solvation = -29060.704901 eV Core-core repulsion = 25115.296255 eV Total energy + Delta-G solvation = -3945.408646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.34462 -40.88837 -39.70829 -37.84325 -37.06320 -35.17627 -34.26682 -32.18293 -31.28992 -30.87563 -29.80075 -28.75701 -26.66210 -26.24466 -25.09245 -23.55730 -22.34225 -21.90906 -20.23122 -19.68189 -18.78944 -18.71511 -17.80895 -17.44932 -17.12484 -16.87705 -16.65377 -16.30134 -16.08916 -15.84850 -15.54909 -15.15739 -14.92949 -14.62244 -14.49931 -14.37616 -14.26169 -14.16278 -13.64234 -13.59752 -13.41752 -13.07524 -13.00653 -12.90339 -12.84108 -12.72754 -12.64413 -12.52229 -12.29403 -12.20275 -12.10296 -11.93148 -11.82797 -11.46667 -11.33359 -10.62435 -10.46207 -10.42481 -9.73301 -9.44626 -8.25759 -6.38131 1.06714 1.36752 1.38203 1.42339 1.51822 1.82762 2.30920 2.38991 2.74918 3.07704 3.10764 3.25628 3.43877 3.46687 3.60199 4.02753 4.06436 4.10469 4.16252 4.22524 4.27970 4.30277 4.35696 4.38270 4.44774 4.48598 4.63687 4.66425 4.69467 4.70559 4.75635 4.85429 4.86038 4.90081 4.92117 5.00901 5.10676 5.19506 5.28020 5.39812 5.50880 5.56937 5.75464 5.85840 5.92446 6.12938 6.38120 6.70169 6.76026 7.00730 7.31287 8.86590 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003232 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.609070 B = 8661.546153 C = 9566.554016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.355 3.645 3 O -0.485 6.485 4 C 0.018 3.982 5 H 0.098 0.902 6 C -0.137 4.137 7 N -0.519 5.519 8 C 0.052 3.948 9 C -0.156 4.156 10 C 0.100 3.900 11 C 0.064 3.936 12 C 0.096 3.904 13 N -0.598 5.598 14 C 0.126 3.874 15 C 0.031 3.969 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.470 3.530 25 O -0.591 6.591 26 C 0.060 3.940 27 O -0.354 6.354 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.059 0.941 44 H -0.023 1.023 45 H -0.003 1.003 46 H 0.265 0.735 47 H 0.108 0.892 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.597 -5.971 -3.959 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.231 3.769 3 O -0.360 6.360 4 C -0.091 4.091 5 H 0.116 0.884 6 C -0.195 4.195 7 N -0.244 5.244 8 C -0.075 4.075 9 C -0.194 4.194 10 C 0.059 3.941 11 C -0.064 4.064 12 C -0.026 4.026 13 N -0.329 5.329 14 C 0.003 3.997 15 C -0.007 4.007 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.199 1.199 24 C 0.259 3.741 25 O -0.472 6.472 26 C -0.018 4.018 27 O -0.272 6.272 28 H 0.128 0.872 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.077 0.923 44 H -0.004 1.004 45 H 0.015 0.985 46 H 0.073 0.927 47 H 0.125 0.875 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.735 -5.263 -4.024 27.543 hybrid contribution 1.396 -0.060 0.382 1.449 sum -25.338 -5.323 -3.642 26.146 Atomic orbital electron populations 1.22288 0.91097 1.06660 1.05399 1.25228 0.93261 0.89330 0.69089 1.90439 1.73060 1.36182 1.36280 1.22628 0.89099 0.96845 1.00491 0.88418 1.21749 1.04138 1.01381 0.92208 1.64840 1.12259 1.29769 1.17562 1.23191 0.93123 0.91159 0.99998 1.23148 0.98865 1.00899 0.96521 1.22144 0.95354 0.89563 0.87011 1.22618 0.95055 1.00915 0.87774 1.22211 0.87725 0.96818 0.95887 1.47751 1.18986 1.15384 1.50738 1.21515 0.84552 0.94356 0.99231 1.19106 0.93449 0.94696 0.93403 1.21548 1.01215 1.25668 1.09888 0.91854 1.25997 1.02273 0.96755 0.94647 1.70112 1.32789 1.39666 1.14437 0.85328 0.78224 0.78383 0.78680 1.18448 1.20504 1.19876 1.21720 0.89783 0.83147 0.79416 1.90717 1.41138 1.74545 1.40828 1.22905 0.83074 0.92418 1.03423 1.88006 1.32052 1.56952 1.50238 0.87229 0.88433 0.88278 0.90285 0.88788 0.93116 0.90870 0.88885 0.91708 0.89806 0.90279 0.89384 0.89315 0.90158 0.89863 0.92258 1.00441 0.98450 0.92672 0.87464 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 10.33 71.24 0.74 -0.62 16 2 C 0.35 5.59 5.96 29.10 0.17 5.77 16 3 O -0.49 -12.65 16.60 -1.45 -0.02 -12.67 16 4 C 0.02 0.25 2.05 44.17 0.09 0.34 16 5 H 0.10 0.84 7.93 -2.39 -0.02 0.82 16 6 C -0.14 -1.42 8.79 71.98 0.63 -0.78 16 7 N -0.52 -10.57 4.77 -862.51 -4.11 -14.68 16 8 C 0.05 0.98 5.31 86.68 0.46 1.44 16 9 C -0.16 -4.00 5.84 31.67 0.19 -3.81 16 10 C 0.10 2.49 0.98 -10.43 -0.01 2.48 16 11 C 0.06 1.37 5.27 86.25 0.45 1.83 16 12 C 0.10 2.95 5.07 86.25 0.44 3.39 16 13 N -0.60 -22.89 2.80 -825.56 -2.31 -25.20 16 14 C 0.13 5.74 5.26 86.38 0.45 6.19 16 15 C 0.03 1.76 5.29 29.85 0.16 1.92 16 16 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 17 H 0.06 3.60 7.74 -2.91 -0.02 3.57 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 20 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 C 0.47 17.86 7.41 87.68 0.65 18.51 16 25 O -0.59 -27.96 16.34 -3.03 -0.05 -28.01 16 26 C 0.06 1.55 6.40 71.11 0.46 2.01 16 27 O -0.35 -8.46 10.30 -148.98 -1.53 -9.99 16 28 H 0.11 0.12 8.00 -2.39 -0.02 0.10 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.68 7.19 -2.38 -0.02 0.66 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.05 8.02 -2.38 -0.02 1.03 16 35 H 0.09 1.69 7.78 -2.39 -0.02 1.67 16 36 H 0.06 2.08 7.66 -2.39 -0.02 2.06 16 37 H 0.08 2.10 5.66 -2.39 -0.01 2.08 16 38 H 0.08 1.39 7.46 -2.39 -0.02 1.38 16 39 H 0.09 2.11 7.29 -2.39 -0.02 2.09 16 40 H 0.09 2.38 8.08 -2.39 -0.02 2.36 16 41 H 0.08 2.70 7.83 -2.39 -0.02 2.68 16 42 H 0.08 3.44 8.04 -2.39 -0.02 3.43 16 43 H 0.06 2.91 7.22 -2.39 -0.02 2.89 16 44 H -0.02 -1.46 8.14 -2.38 -0.02 -1.48 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.11 2.43 6.31 -2.39 -0.02 2.42 16 48 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -81.62 380.98 0.80 -80.82 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.94 Total: 12.95 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.57 Total: 7.05 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -6.14 Total: -97.91 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.61 Total: -50.67 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.62 0.80 -80.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273980458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.296 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds