Wall clock time and date at job start Fri Apr 10 2020 18:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20758 * 119.99932 * 2 1 4 4 C 1.50698 * 120.00048 * 180.02562 * 2 1 3 5 5 H 1.09005 * 109.47459 * 38.00193 * 4 2 1 6 6 C 1.53001 * 109.47083 * 278.00061 * 4 2 1 7 7 N 1.46903 * 109.47540 * 157.99784 * 4 2 1 8 8 C 1.48607 * 111.00017 * 293.80167 * 7 4 2 9 9 C 1.54503 * 104.61230 * 201.21985 * 8 7 4 10 10 C 1.53774 * 104.88492 * 23.75798 * 9 8 7 11 11 C 1.48673 * 111.00373 * 178.29078 * 7 4 2 12 12 C 1.52426 * 110.34457 * 119.00014 * 10 9 8 13 13 N 1.46198 * 109.94640 * 169.63297 * 12 10 9 14 14 C 1.46503 * 118.77160 * 162.46395 * 13 12 10 15 15 C 1.52996 * 109.47161 * 270.02176 * 14 13 12 16 16 C 1.50701 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99667 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00114 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00138 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99886 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47322 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47365 * 119.99912 * 20 18 16 23 23 H 1.48504 * 109.47178 * 240.00013 * 20 18 16 24 24 C 1.33843 * 122.45449 * 342.49045 * 13 12 10 25 25 O 1.21290 * 118.69430 * 182.12064 * 24 13 12 26 26 C 1.50303 * 122.61078 * 2.40145 * 24 13 12 27 27 O 1.42563 * 110.26657 * 240.88996 * 10 9 8 28 28 H 1.09003 * 109.47248 * 239.99954 * 1 2 3 29 29 H 1.09004 * 109.47475 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47285 * 119.99958 * 1 2 3 31 31 H 1.08999 * 109.47386 * 60.00089 * 6 4 2 32 32 H 1.09004 * 109.47225 * 180.02562 * 6 4 2 33 33 H 1.08997 * 109.46890 * 299.99542 * 6 4 2 34 34 H 1.08996 * 110.40924 * 82.43782 * 8 7 4 35 35 H 1.09003 * 110.40453 * 320.00479 * 8 7 4 36 36 H 1.08997 * 110.35702 * 264.90763 * 9 8 7 37 37 H 1.09001 * 110.35267 * 142.60665 * 9 8 7 38 38 H 1.08996 * 110.42938 * 39.88501 * 11 7 4 39 39 H 1.09005 * 110.42998 * 277.39299 * 11 7 4 40 40 H 1.09001 * 109.39062 * 49.49162 * 12 10 9 41 41 H 1.08996 * 109.39057 * 289.78130 * 12 10 9 42 42 H 1.08999 * 109.46852 * 30.02141 * 14 13 12 43 43 H 1.09003 * 109.46761 * 150.02365 * 14 13 12 44 44 H 1.09000 * 109.47555 * 300.00438 * 15 14 13 45 45 H 1.09003 * 109.47129 * 60.00415 * 15 14 13 46 46 H 0.96997 * 119.99823 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.39884 * 103.68185 * 26 24 13 48 48 H 1.08998 * 109.39677 * 223.41764 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7408 -2.0244 -0.6336 6 6 2.3416 -1.8478 1.4276 7 7 3.6174 -1.0869 -0.5194 8 6 3.5834 -0.7014 -1.9541 9 6 4.9957 -1.0390 -2.4820 10 6 5.5277 -2.1184 -1.5246 11 6 4.4056 -2.3473 -0.4965 12 6 5.8165 -3.4067 -2.2863 13 7 6.5461 -4.3399 -1.4294 14 6 6.5878 -5.7556 -1.8037 15 6 5.4016 -6.4857 -1.1708 16 6 5.4442 -7.9419 -1.5563 17 1 6.2382 -8.3100 -2.1892 18 6 4.4695 -8.8044 -1.1011 19 7 3.5023 -8.3561 -0.3309 20 14 4.5219 -10.6093 -1.5796 21 1 5.7017 -10.8575 -2.4467 22 1 4.6240 -11.4433 -0.3552 23 1 3.2821 -10.9621 -2.3170 24 6 7.1769 -3.9491 -0.3155 25 8 7.7942 -4.7742 0.3241 26 6 7.1454 -2.5296 0.1776 27 8 6.7084 -1.6598 -0.8705 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.3347 -2.0097 1.8126 32 1 2.8870 -2.7915 1.4273 33 1 2.8613 -1.1285 2.0606 34 1 3.3844 0.3653 -2.0565 35 1 2.8299 -1.2823 -2.4860 36 1 5.6337 -0.1558 -2.4498 37 1 4.9374 -1.4289 -3.4982 38 1 3.7830 -3.1909 -0.7941 39 1 4.8264 -2.5149 0.4950 40 1 6.4168 -3.1794 -3.1673 41 1 4.8762 -3.8612 -2.5982 42 1 6.5334 -5.8464 -2.8886 43 1 7.5185 -6.1981 -1.4483 44 1 5.4559 -6.3949 -0.0859 45 1 4.4710 -6.0433 -1.5263 46 1 2.8168 -8.9629 -0.0104 47 1 6.4587 -2.4543 1.0206 48 1 8.1447 -2.2358 0.4989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273980460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:42 Heat of formation + Delta-G solvation = -97.492650 kcal Electronic energy + Delta-G solvation = -29350.940881 eV Core-core repulsion = 25406.600121 eV Total energy + Delta-G solvation = -3944.340760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15364 -39.89476 -38.50266 -36.69930 -35.46924 -33.65928 -33.04568 -30.82917 -30.26241 -29.40799 -28.62310 -27.51350 -26.04240 -24.54718 -23.72607 -21.87330 -21.66321 -20.34485 -19.47251 -18.37700 -17.62120 -16.88593 -16.65683 -16.37192 -15.88109 -15.56608 -15.27585 -15.23419 -14.60364 -14.45401 -14.43450 -14.26465 -13.90528 -13.71636 -13.14864 -12.86790 -12.80434 -12.74959 -12.58648 -12.42447 -12.36391 -12.24407 -12.00371 -11.87463 -11.57237 -11.50708 -11.46732 -11.35177 -11.00938 -10.81796 -10.72067 -10.17511 -9.96458 -9.92283 -9.67899 -9.33789 -8.97184 -8.66274 -8.42406 -8.14157 -6.08008 -4.10558 1.76570 2.88757 3.21888 3.26845 3.34917 3.39289 3.41522 3.60605 3.92650 4.30257 4.40077 4.45366 4.48490 4.76059 4.79275 4.85875 4.94279 4.95813 5.11151 5.12908 5.17926 5.20327 5.28879 5.38457 5.40769 5.46442 5.51510 5.54007 5.56569 5.62759 5.65361 5.72389 5.83611 5.91041 5.98556 6.05151 6.47477 6.48457 6.66886 6.71585 6.79665 6.97430 7.36853 7.51363 7.64107 7.87901 7.91752 8.28953 8.49765 8.95763 9.53748 11.03572 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003818 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.273628 B = 7332.247819 C = 8747.625344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.358 3.642 3 O -0.436 6.436 4 C 0.020 3.980 5 H 0.072 0.928 6 C -0.142 4.142 7 N -0.486 5.486 8 C 0.029 3.971 9 C -0.104 4.104 10 C 0.101 3.899 11 C 0.006 3.994 12 C 0.097 3.903 13 N -0.598 5.598 14 C 0.111 3.889 15 C 0.016 3.984 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.481 3.519 25 O -0.539 6.539 26 C 0.046 3.954 27 O -0.352 6.352 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.021 0.979 45 H 0.013 0.987 46 H 0.260 0.740 47 H 0.089 0.911 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 17.803 -2.610 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.231 3.769 3 O -0.307 6.307 4 C -0.090 4.090 5 H 0.090 0.910 6 C -0.200 4.200 7 N -0.211 5.211 8 C -0.099 4.099 9 C -0.142 4.142 10 C 0.061 3.939 11 C -0.121 4.121 12 C -0.027 4.027 13 N -0.330 5.330 14 C -0.009 4.009 15 C -0.022 4.022 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.267 3.733 25 O -0.417 6.417 26 C -0.033 4.033 27 O -0.271 6.271 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.031 0.969 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.107 18.479 -1.898 19.025 hybrid contribution -0.820 -2.097 -0.606 2.332 sum -4.926 16.382 -2.504 17.289 Atomic orbital electron populations 1.22338 0.94206 1.04946 1.04699 1.24531 0.91515 0.89828 0.71007 1.90408 1.71934 1.34476 1.33847 1.22386 0.90836 0.96431 0.99341 0.90988 1.21767 1.02939 1.02108 0.93174 1.65431 1.11007 1.27730 1.16930 1.23248 0.96513 1.02073 0.88045 1.22237 0.95757 0.98717 0.97534 1.22086 0.85578 0.93590 0.92681 1.23810 0.95471 0.91840 1.01013 1.22060 0.98178 0.88723 0.93709 1.47714 1.51031 1.10227 1.24071 1.21954 1.02678 0.77286 0.99022 1.19343 0.91592 0.94546 0.96670 1.21127 1.10338 0.93340 1.31015 0.92438 1.24980 0.95379 0.98874 0.94957 1.69971 1.13639 1.35235 1.34487 0.86507 0.77922 0.85039 0.78374 1.19635 1.20921 1.21009 1.20774 0.79671 0.91342 0.81493 1.90750 1.42852 1.53249 1.54876 1.22862 1.02928 0.86202 0.91282 1.88093 1.42241 1.47355 1.49378 0.88831 0.89904 0.89002 0.91302 0.90781 0.91262 0.89214 0.93412 0.88822 0.89530 0.91472 0.88883 0.90821 0.89369 0.91792 0.90457 0.96085 0.96865 0.93034 0.89319 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 10.26 36.00 0.37 -0.94 16 2 C 0.36 3.58 5.92 -29.04 -0.17 3.41 16 3 O -0.44 -5.91 16.49 6.00 0.10 -5.81 16 4 C 0.02 0.20 2.18 -68.86 -0.15 0.05 16 5 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 6 C -0.14 -1.42 8.99 37.16 0.33 -1.09 16 7 N -0.49 -5.84 4.85 -223.50 -1.08 -6.92 16 8 C 0.03 0.30 5.79 -2.09 -0.01 0.29 16 9 C -0.10 -1.06 6.44 -25.54 -0.16 -1.22 16 10 C 0.10 1.28 1.04 -90.04 -0.09 1.19 16 11 C 0.01 0.08 4.09 -2.38 -0.01 0.07 16 12 C 0.10 1.34 5.08 -4.50 -0.02 1.32 16 13 N -0.60 -10.67 2.80 -174.72 -0.49 -11.15 16 14 C 0.11 2.33 5.26 -4.04 -0.02 2.31 16 15 C 0.02 0.42 5.29 -27.88 -0.15 0.27 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.48 8.87 7.42 -11.59 -0.09 8.79 16 25 O -0.54 -12.20 16.34 5.55 0.09 -12.11 16 26 C 0.05 0.66 6.39 35.81 0.23 0.89 16 27 O -0.35 -4.90 10.31 -35.23 -0.36 -5.26 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.83 6.91 -51.93 -0.36 0.48 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 35 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.09 0.97 7.97 -51.93 -0.41 0.55 16 37 H 0.09 0.70 7.68 -51.93 -0.40 0.30 16 38 H 0.07 0.94 7.49 -51.93 -0.39 0.55 16 39 H 0.09 1.30 5.20 -51.93 -0.27 1.03 16 40 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.09 1.20 7.82 -51.93 -0.41 0.80 16 42 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 43 H 0.08 1.76 7.23 -51.93 -0.38 1.39 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.09 1.19 6.34 -51.93 -0.33 0.86 16 48 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -34.69 380.90 -8.56 -43.25 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.91 Total: -0.64 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.36 Total: 2.11 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.84 Total: -43.67 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.17 Total: -23.18 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.69 -8.56 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273980460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.240 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds