Wall clock time and date at job start Fri Apr 10 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20758 * 119.99932 * 2 1 4 4 C 1.50698 * 120.00048 * 180.02562 * 2 1 3 5 5 H 1.09005 * 109.47459 * 38.00193 * 4 2 1 6 6 C 1.53001 * 109.47083 * 278.00061 * 4 2 1 7 7 N 1.46903 * 109.47540 * 157.99784 * 4 2 1 8 8 C 1.48607 * 111.00017 * 293.80167 * 7 4 2 9 9 C 1.54503 * 104.61230 * 201.21985 * 8 7 4 10 10 C 1.53774 * 104.88492 * 23.75798 * 9 8 7 11 11 C 1.48673 * 111.00373 * 178.29078 * 7 4 2 12 12 C 1.52426 * 110.34457 * 119.00014 * 10 9 8 13 13 N 1.46198 * 109.94640 * 169.63297 * 12 10 9 14 14 C 1.46503 * 118.77160 * 162.46395 * 13 12 10 15 15 C 1.52996 * 109.47161 * 270.02176 * 14 13 12 16 16 C 1.50701 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99667 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00114 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00138 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99886 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47322 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47365 * 119.99912 * 20 18 16 23 23 H 1.48504 * 109.47178 * 240.00013 * 20 18 16 24 24 C 1.33843 * 122.45449 * 342.49045 * 13 12 10 25 25 O 1.21290 * 118.69430 * 182.12064 * 24 13 12 26 26 C 1.50303 * 122.61078 * 2.40145 * 24 13 12 27 27 O 1.42563 * 110.26657 * 240.88996 * 10 9 8 28 28 H 1.09003 * 109.47248 * 239.99954 * 1 2 3 29 29 H 1.09004 * 109.47475 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47285 * 119.99958 * 1 2 3 31 31 H 1.08999 * 109.47386 * 60.00089 * 6 4 2 32 32 H 1.09004 * 109.47225 * 180.02562 * 6 4 2 33 33 H 1.08997 * 109.46890 * 299.99542 * 6 4 2 34 34 H 1.08996 * 110.40924 * 82.43782 * 8 7 4 35 35 H 1.09003 * 110.40453 * 320.00479 * 8 7 4 36 36 H 1.08997 * 110.35702 * 264.90763 * 9 8 7 37 37 H 1.09001 * 110.35267 * 142.60665 * 9 8 7 38 38 H 1.08996 * 110.42938 * 39.88501 * 11 7 4 39 39 H 1.09005 * 110.42998 * 277.39299 * 11 7 4 40 40 H 1.09001 * 109.39062 * 49.49162 * 12 10 9 41 41 H 1.08996 * 109.39057 * 289.78130 * 12 10 9 42 42 H 1.08999 * 109.46852 * 30.02141 * 14 13 12 43 43 H 1.09003 * 109.46761 * 150.02365 * 14 13 12 44 44 H 1.09000 * 109.47555 * 300.00438 * 15 14 13 45 45 H 1.09003 * 109.47129 * 60.00415 * 15 14 13 46 46 H 0.96997 * 119.99823 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.39884 * 103.68185 * 26 24 13 48 48 H 1.08998 * 109.39677 * 223.41764 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7408 -2.0244 -0.6336 6 6 2.3416 -1.8478 1.4276 7 7 3.6174 -1.0869 -0.5194 8 6 3.5834 -0.7014 -1.9541 9 6 4.9957 -1.0390 -2.4820 10 6 5.5277 -2.1184 -1.5246 11 6 4.4056 -2.3473 -0.4965 12 6 5.8165 -3.4067 -2.2863 13 7 6.5461 -4.3399 -1.4294 14 6 6.5878 -5.7556 -1.8037 15 6 5.4016 -6.4857 -1.1708 16 6 5.4442 -7.9419 -1.5563 17 1 6.2382 -8.3100 -2.1892 18 6 4.4695 -8.8044 -1.1011 19 7 3.5023 -8.3561 -0.3309 20 14 4.5219 -10.6093 -1.5796 21 1 5.7017 -10.8575 -2.4467 22 1 4.6240 -11.4433 -0.3552 23 1 3.2821 -10.9621 -2.3170 24 6 7.1769 -3.9491 -0.3155 25 8 7.7942 -4.7742 0.3241 26 6 7.1454 -2.5296 0.1776 27 8 6.7084 -1.6598 -0.8705 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.3347 -2.0097 1.8126 32 1 2.8870 -2.7915 1.4273 33 1 2.8613 -1.1285 2.0606 34 1 3.3844 0.3653 -2.0565 35 1 2.8299 -1.2823 -2.4860 36 1 5.6337 -0.1558 -2.4498 37 1 4.9374 -1.4289 -3.4982 38 1 3.7830 -3.1909 -0.7941 39 1 4.8264 -2.5149 0.4950 40 1 6.4168 -3.1794 -3.1673 41 1 4.8762 -3.8612 -2.5982 42 1 6.5334 -5.8464 -2.8886 43 1 7.5185 -6.1981 -1.4483 44 1 5.4559 -6.3949 -0.0859 45 1 4.4710 -6.0433 -1.5263 46 1 2.8168 -8.9629 -0.0104 47 1 6.4587 -2.4543 1.0206 48 1 8.1447 -2.2358 0.4989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273980460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:41 Heat of formation + Delta-G solvation = -122.423490 kcal Electronic energy + Delta-G solvation = -29352.021963 eV Core-core repulsion = 25406.600121 eV Total energy + Delta-G solvation = -3945.421842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31423 -40.89552 -39.70541 -37.77497 -37.03317 -35.15824 -34.49943 -32.18802 -31.47440 -30.43285 -29.57057 -28.79542 -27.29104 -26.29175 -24.68771 -23.38218 -22.74738 -21.64727 -20.33050 -19.62346 -18.83251 -18.69731 -17.89554 -17.45363 -17.15533 -16.78336 -16.63766 -16.30765 -16.05723 -15.68596 -15.44584 -15.26097 -14.98150 -14.83393 -14.60055 -14.37209 -14.28463 -13.89627 -13.63059 -13.51520 -13.40046 -13.21519 -13.06307 -12.90525 -12.88199 -12.73086 -12.65094 -12.55179 -12.39822 -12.28879 -11.97938 -11.91319 -11.74491 -11.44612 -11.31424 -10.60278 -10.51803 -10.39922 -9.72013 -9.54662 -8.24399 -6.35815 0.98904 1.38210 1.39940 1.43505 1.52936 1.85350 2.39349 2.51066 2.58096 3.09223 3.09859 3.26470 3.39388 3.51058 3.69937 3.99008 4.03653 4.06378 4.13047 4.20992 4.21757 4.30617 4.33820 4.38864 4.49006 4.51766 4.56424 4.62233 4.65506 4.70193 4.71290 4.78748 4.79664 4.89002 4.92832 5.02216 5.10282 5.17090 5.20479 5.42541 5.54436 5.59617 5.77261 5.80269 5.89539 6.15587 6.39158 6.60745 6.78265 7.02537 7.33659 8.87786 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003818 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.273628 B = 7332.247819 C = 8747.625344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.365 3.635 3 O -0.477 6.477 4 C 0.013 3.987 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.501 5.501 8 C 0.030 3.970 9 C -0.096 4.096 10 C 0.100 3.900 11 C 0.012 3.988 12 C 0.093 3.907 13 N -0.598 5.598 14 C 0.126 3.874 15 C 0.031 3.969 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.473 3.527 25 O -0.590 6.590 26 C 0.058 3.942 27 O -0.352 6.352 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.055 0.945 44 H -0.025 1.025 45 H 0.003 0.997 46 H 0.264 0.736 47 H 0.097 0.903 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 18.228 -4.357 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.241 3.759 3 O -0.351 6.351 4 C -0.096 4.096 5 H 0.103 0.897 6 C -0.197 4.197 7 N -0.226 5.226 8 C -0.098 4.098 9 C -0.134 4.134 10 C 0.060 3.940 11 C -0.116 4.116 12 C -0.029 4.029 13 N -0.329 5.329 14 C 0.004 3.996 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.262 3.738 25 O -0.472 6.472 26 C -0.021 4.021 27 O -0.270 6.270 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.074 0.926 44 H -0.007 1.007 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.097 18.937 -3.677 19.953 hybrid contribution -0.575 -2.213 -0.030 2.287 sum -5.671 16.724 -3.707 18.044 Atomic orbital electron populations 1.22350 0.91027 1.05702 1.06491 1.24938 0.93072 0.88718 0.69211 1.90402 1.73031 1.35568 1.36092 1.22537 0.90371 0.97299 0.99428 0.89725 1.21743 1.03981 1.00739 0.93264 1.65416 1.12065 1.26832 1.18261 1.23285 0.97158 1.02116 0.87209 1.22283 0.95230 0.97810 0.98100 1.22223 0.84971 0.93921 0.92904 1.23656 0.95698 0.92019 1.00244 1.22367 0.98329 0.88242 0.93990 1.47753 1.51050 1.09584 1.24542 1.21537 0.99393 0.78899 0.99809 1.19118 0.93042 0.94636 0.93913 1.21552 1.10631 0.94674 1.31340 0.91923 1.25914 0.94863 1.03801 0.94701 1.70094 1.14367 1.37070 1.35388 0.85396 0.78593 0.78901 0.78145 1.18558 1.20830 1.19774 1.21583 0.78605 0.92719 0.80902 1.90718 1.45126 1.54991 1.56350 1.22818 1.04419 0.83470 0.91365 1.88108 1.42715 1.46923 1.49244 0.86976 0.89741 0.86975 0.88909 0.92682 0.92267 0.89465 0.91928 0.88664 0.86827 0.92927 0.90541 0.88126 0.89051 0.89252 0.92626 1.00650 0.97891 0.92704 0.88519 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 10.26 71.23 0.73 -1.33 16 2 C 0.36 6.82 5.92 29.10 0.17 6.99 16 3 O -0.48 -12.66 16.49 -1.44 -0.02 -12.69 16 4 C 0.01 0.26 2.18 44.17 0.10 0.36 16 5 H 0.09 1.46 7.96 -2.38 -0.02 1.44 16 6 C -0.14 -2.78 8.99 71.98 0.65 -2.13 16 7 N -0.50 -11.69 4.85 -861.01 -4.18 -15.87 16 8 C 0.03 0.56 5.79 86.48 0.50 1.06 16 9 C -0.10 -1.71 6.44 31.37 0.20 -1.51 16 10 C 0.10 2.40 1.04 -10.42 -0.01 2.39 16 11 C 0.01 0.31 4.09 86.26 0.35 0.66 16 12 C 0.09 2.43 5.08 86.25 0.44 2.87 16 13 N -0.60 -21.41 2.80 -825.59 -2.31 -23.72 16 14 C 0.13 5.35 5.26 86.38 0.45 5.80 16 15 C 0.03 1.63 5.29 29.85 0.16 1.79 16 16 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 20 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.47 17.84 7.42 87.68 0.65 18.49 16 25 O -0.59 -27.85 16.34 -3.06 -0.05 -27.90 16 26 C 0.06 1.64 6.39 71.11 0.45 2.10 16 27 O -0.35 -9.30 10.31 -148.98 -1.54 -10.84 16 28 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.89 8.12 -2.38 -0.02 0.88 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.30 6.91 -2.39 -0.02 1.28 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.73 7.48 -2.39 -0.02 1.72 16 35 H 0.06 1.00 7.87 -2.39 -0.02 0.98 16 36 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 37 H 0.11 1.42 7.68 -2.39 -0.02 1.40 16 38 H 0.05 1.50 7.49 -2.39 -0.02 1.48 16 39 H 0.08 2.22 5.20 -2.38 -0.01 2.21 16 40 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 41 H 0.09 2.36 7.82 -2.39 -0.02 2.34 16 42 H 0.09 3.33 8.04 -2.39 -0.02 3.31 16 43 H 0.06 2.61 7.23 -2.39 -0.02 2.59 16 44 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.10 2.62 6.34 -2.39 -0.02 2.60 16 48 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -77.55 380.90 0.69 -76.85 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.94 Total: 15.89 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.54 Total: 7.79 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -6.21 Total: -94.90 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -1.61 Total: -51.43 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.55 0.69 -76.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273980460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.569 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds