Wall clock time and date at job start Fri Apr 10 2020 18:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20756 * 120.00117 * 2 1 4 4 C 1.50696 * 120.00013 * 180.02562 * 2 1 3 5 5 H 1.09005 * 109.47610 * 44.99643 * 4 2 1 6 6 C 1.53004 * 109.47049 * 284.99712 * 4 2 1 7 7 N 1.46905 * 109.47270 * 164.99915 * 4 2 1 8 8 C 1.47511 * 110.99911 * 178.33835 * 7 4 2 9 9 C 1.54463 * 107.25868 * 123.21772 * 8 7 4 10 10 C 1.54311 * 102.94993 * 21.54239 * 9 8 7 11 11 C 1.48004 * 110.99901 * 299.22720 * 7 4 2 12 12 C 1.52031 * 110.64774 * 207.01812 * 10 9 8 13 13 N 1.46277 * 109.96462 * 283.56924 * 12 10 9 14 14 C 1.46498 * 118.81045 * 162.87827 * 13 12 10 15 15 C 1.52999 * 109.47062 * 90.00461 * 14 13 12 16 16 C 1.50699 * 109.47191 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00060 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00033 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00153 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00265 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46757 * 89.99672 * 20 18 16 22 22 H 1.48490 * 109.47472 * 209.99906 * 20 18 16 23 23 H 1.48501 * 109.47013 * 330.00212 * 20 18 16 24 24 C 1.33833 * 122.37296 * 342.90947 * 13 12 10 25 25 O 1.21279 * 118.61975 * 182.75584 * 24 13 12 26 26 C 1.50278 * 122.75935 * 2.72959 * 24 13 12 27 27 O 1.42105 * 110.68726 * 83.57190 * 10 9 8 28 28 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47098 * 299.99316 * 1 2 3 30 30 H 1.09003 * 109.47211 * 59.99904 * 1 2 3 31 31 H 1.08996 * 109.47139 * 294.07578 * 6 4 2 32 32 H 1.09000 * 109.46969 * 54.08248 * 6 4 2 33 33 H 1.09003 * 109.46998 * 174.07500 * 6 4 2 34 34 H 1.09001 * 109.87777 * 242.62928 * 8 7 4 35 35 H 1.08999 * 109.88234 * 3.64170 * 8 7 4 36 36 H 1.08994 * 110.71708 * 139.90608 * 9 8 7 37 37 H 1.08996 * 110.71525 * 263.17488 * 9 8 7 38 38 H 1.09007 * 110.38023 * 333.27901 * 11 7 4 39 39 H 1.09003 * 110.38170 * 95.64186 * 11 7 4 40 40 H 1.08993 * 109.39226 * 43.72368 * 12 10 9 41 41 H 1.08995 * 109.38957 * 163.52368 * 12 10 9 42 42 H 1.09001 * 109.47059 * 210.00468 * 14 13 12 43 43 H 1.08994 * 109.47429 * 330.00170 * 14 13 12 44 44 H 1.09001 * 109.47189 * 299.99927 * 15 14 13 45 45 H 1.09000 * 109.47279 * 60.00045 * 15 14 13 46 46 H 0.96998 * 120.00681 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.38978 * 103.42153 * 26 24 13 48 48 H 1.09003 * 109.38594 * 223.22297 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.8128 -1.9829 -0.7275 6 6 2.1922 -1.9340 1.3925 7 7 3.6639 -1.0601 -0.3590 8 6 4.4429 -2.3124 -0.3312 9 6 5.0784 -2.4879 -1.7280 10 6 5.0711 -1.0524 -2.2941 11 6 3.7704 -0.4677 -1.7111 12 6 5.0195 -1.0754 -3.8133 13 7 6.3357 -1.4166 -4.3527 14 6 6.4342 -1.8637 -5.7443 15 6 6.6481 -0.6530 -6.6550 16 6 6.7500 -1.1129 -8.0864 17 1 6.6707 -2.1637 -8.3230 18 6 6.9457 -0.1923 -9.0940 19 7 7.0428 1.0872 -8.8060 20 14 7.0728 -0.7624 -10.8684 21 1 5.7204 -0.7760 -11.4819 22 1 7.9503 0.1661 -11.6251 23 1 7.6483 -2.1308 -10.9086 24 6 7.4531 -1.3356 -3.6205 25 8 8.5146 -1.5864 -4.1508 26 6 7.4478 -0.9464 -2.1690 27 8 6.2026 -0.3258 -1.8346 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.7319 -1.3062 2.1015 32 1 1.1505 -2.0191 1.7021 33 1 2.6454 -2.9250 1.3664 34 1 5.2242 -2.2462 0.4260 35 1 3.7850 -3.1535 -0.1122 36 1 6.0980 -2.8638 -1.6433 37 1 4.4725 -3.1496 -2.3469 38 1 2.9158 -0.7594 -2.3217 39 1 3.8382 0.6183 -1.6455 40 1 4.2913 -1.8179 -4.1395 41 1 4.7234 -0.0927 -4.1803 42 1 7.2757 -2.5488 -5.8471 43 1 5.5137 -2.3737 -6.0281 44 1 5.8066 0.0322 -6.5522 45 1 7.5687 -0.1429 -6.3712 46 1 7.1801 1.7350 -9.5149 47 1 7.5850 -1.8366 -1.5552 48 1 8.2618 -0.2468 -1.9790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273980461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:44 Heat of formation + Delta-G solvation = -94.222058 kcal Electronic energy + Delta-G solvation = -28886.008256 eV Core-core repulsion = 24941.809320 eV Total energy + Delta-G solvation = -3944.198936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23184 -40.01109 -38.55827 -36.79120 -35.45280 -33.56909 -32.98358 -30.86864 -30.05232 -30.02091 -29.03636 -27.35102 -25.41077 -24.62518 -24.43268 -21.86960 -21.45220 -20.50016 -19.63781 -18.28228 -17.68732 -16.87786 -16.56979 -16.55247 -15.96722 -15.82613 -15.26841 -15.21136 -14.67773 -14.55701 -14.39480 -14.19511 -13.75694 -13.63628 -13.34496 -13.26959 -13.01884 -12.81004 -12.65491 -12.54706 -12.45851 -12.35315 -12.15897 -11.94824 -11.70207 -11.52778 -11.30769 -11.28605 -11.02945 -10.89712 -10.67566 -10.21946 -9.89904 -9.82664 -9.78192 -9.30362 -8.96188 -8.60158 -8.35330 -8.11153 -6.00005 -4.03607 1.68636 2.90265 3.15932 3.31765 3.33693 3.38439 3.42212 3.54489 3.76103 4.27931 4.30363 4.43152 4.47873 4.60662 4.61974 4.71264 4.75893 4.94121 4.99488 5.04098 5.09136 5.13434 5.14356 5.23416 5.32259 5.35836 5.40347 5.43045 5.52927 5.56315 5.60059 5.65091 5.71591 5.78412 5.95836 6.05408 6.47854 6.53505 6.63467 6.72868 6.84935 6.98024 7.29803 7.59554 7.71348 7.92361 8.00032 8.35093 8.51629 9.02946 9.60081 11.11427 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002932 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.218163 B = 9548.089523 C =10439.237939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.352 3.648 3 O -0.430 6.430 4 C 0.025 3.975 5 H 0.070 0.930 6 C -0.140 4.140 7 N -0.506 5.506 8 C 0.048 3.952 9 C -0.171 4.171 10 C 0.096 3.904 11 C 0.063 3.937 12 C 0.099 3.901 13 N -0.596 5.596 14 C 0.115 3.885 15 C 0.014 3.986 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.480 3.520 25 O -0.538 6.538 26 C 0.049 3.951 27 O -0.342 6.342 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.085 0.915 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 -8.099 22.357 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.225 3.775 3 O -0.300 6.300 4 C -0.085 4.085 5 H 0.088 0.912 6 C -0.198 4.198 7 N -0.231 5.231 8 C -0.079 4.079 9 C -0.210 4.210 10 C 0.055 3.945 11 C -0.065 4.065 12 C -0.025 4.025 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.266 3.734 25 O -0.416 6.416 26 C -0.030 4.030 27 O -0.260 6.260 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.525 -6.973 22.489 27.154 hybrid contribution -0.367 -1.065 -1.834 2.152 sum -13.892 -8.038 20.655 26.157 Atomic orbital electron populations 1.22263 0.94215 1.04534 1.05000 1.24565 0.91554 0.89947 0.71449 1.90451 1.71655 1.34502 1.33431 1.22432 0.90205 0.96356 0.99489 0.91248 1.21771 1.02567 1.01128 0.94287 1.63621 1.08147 1.24443 1.26875 1.22863 0.97456 0.90561 0.97004 1.23393 1.03152 0.97060 0.97354 1.22124 0.88410 0.91564 0.92448 1.22912 0.93571 1.02324 0.87678 1.21810 0.86132 1.02626 0.91951 1.47693 1.05768 1.65438 1.13966 1.21947 1.01208 0.99815 0.77623 1.19351 0.97628 0.92256 0.93127 1.21077 1.50109 0.93434 0.91393 0.92573 1.25007 0.95197 0.94879 0.99230 1.69976 1.49485 1.00876 1.32762 0.86555 0.77908 0.78627 0.84677 1.20667 1.21167 1.19816 1.20754 0.84341 0.78729 0.89573 1.90757 1.29289 1.49793 1.71740 1.22864 0.88088 1.00531 0.91540 1.88056 1.12362 1.47724 1.77900 0.90150 0.88939 0.88827 0.90999 0.91407 0.91279 0.89898 0.92062 0.89728 0.89900 0.91966 0.87678 0.89901 0.90295 0.90670 0.91879 0.96673 0.95895 0.92929 0.89749 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 10.26 36.00 0.37 -0.60 16 2 C 0.35 2.97 5.99 -29.04 -0.17 2.79 16 3 O -0.43 -5.52 15.93 6.00 0.10 -5.42 16 4 C 0.02 0.18 1.94 -68.86 -0.13 0.05 16 5 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 6 C -0.14 -0.75 8.89 37.16 0.33 -0.42 16 7 N -0.51 -5.05 4.74 -224.93 -1.07 -6.12 16 8 C 0.05 0.41 6.22 -2.72 -0.02 0.39 16 9 C -0.17 -1.68 5.76 -25.28 -0.15 -1.82 16 10 C 0.10 1.18 0.83 -89.87 -0.07 1.11 16 11 C 0.06 0.70 4.73 -2.66 -0.01 0.69 16 12 C 0.10 1.42 5.39 -4.66 -0.03 1.39 16 13 N -0.60 -10.91 2.82 -174.92 -0.49 -11.41 16 14 C 0.11 2.46 5.22 -4.04 -0.02 2.44 16 15 C 0.01 0.38 5.29 -27.88 -0.15 0.24 16 16 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.48 9.02 7.45 -11.61 -0.09 8.93 16 25 O -0.54 -12.41 16.37 5.56 0.09 -12.32 16 26 C 0.05 0.70 6.37 35.80 0.23 0.93 16 27 O -0.34 -4.99 10.44 -35.23 -0.37 -5.35 16 28 H 0.08 0.21 8.00 -51.93 -0.42 -0.21 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.07 0.32 6.59 -51.93 -0.34 -0.03 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.39 6.22 -51.93 -0.32 0.07 16 36 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 37 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 38 H 0.06 0.58 7.62 -51.93 -0.40 0.19 16 39 H 0.11 1.43 7.41 -51.93 -0.38 1.04 16 40 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 41 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 42 H 0.07 1.72 7.30 -51.93 -0.38 1.34 16 43 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 44 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.08 0.98 6.59 -51.93 -0.34 0.64 16 48 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -36.73 379.83 -8.49 -45.23 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.87 Total: -2.87 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.32 Total: 2.37 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.82 Total: -44.33 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.18 Total: -23.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.73 -8.49 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273980461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.995 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds