Wall clock time and date at job start Fri Apr 10 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.46950 * 2 1 4 4 C 1.34235 * 117.00198 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99414 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00126 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46701 * 299.99786 * 6 4 3 8 8 C 1.52994 * 109.47017 * 59.99742 * 6 4 3 9 9 N 1.46495 * 109.46853 * 179.97438 * 6 4 3 10 10 C 1.46887 * 124.37059 * 120.01498 * 9 6 4 11 11 C 1.54712 * 105.51738 * 196.78086 * 10 9 6 12 12 C 1.53755 * 101.43819 * 335.27612 * 11 10 9 13 13 C 1.53260 * 111.02215 * 145.23825 * 12 11 10 14 14 C 1.54638 * 104.67386 * 120.62072 * 13 12 11 15 15 N 1.48651 * 104.63840 * 23.67902 * 14 13 12 16 16 C 1.46896 * 111.00003 * 201.49694 * 15 14 13 17 17 C 1.50703 * 109.46909 * 290.11799 * 16 15 14 18 18 H 1.07996 * 120.00055 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00152 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00227 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99924 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47214 * 89.99834 * 21 19 17 23 23 H 1.48499 * 109.47536 * 209.99668 * 21 19 17 24 24 H 1.48500 * 109.47280 * 330.00128 * 21 19 17 25 25 C 1.48810 * 104.37864 * 321.14424 * 15 14 13 26 26 C 1.34756 * 124.37443 * 299.97462 * 9 6 4 27 27 O 1.21283 * 125.12999 * 359.00075 * 26 9 6 28 28 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47199 * 300.00321 * 1 2 3 30 30 H 1.08999 * 109.47209 * 60.00282 * 1 2 3 31 31 H 1.08995 * 109.47375 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47209 * 119.99718 * 2 1 3 33 33 H 1.08997 * 109.47178 * 299.99730 * 8 6 4 34 34 H 1.08998 * 109.47349 * 60.00441 * 8 6 4 35 35 H 1.09002 * 109.46964 * 179.97438 * 8 6 4 36 36 H 1.08992 * 110.23629 * 315.79215 * 10 9 6 37 37 H 1.09000 * 110.23397 * 77.77652 * 10 9 6 38 38 H 1.09007 * 111.01721 * 93.54192 * 11 10 9 39 39 H 1.08997 * 111.01543 * 217.42391 * 11 10 9 40 40 H 1.09009 * 110.39244 * 239.41872 * 13 12 11 41 41 H 1.08997 * 110.39507 * 1.70269 * 13 12 11 42 42 H 1.09001 * 110.40436 * 142.46764 * 14 13 12 43 43 H 1.08997 * 110.40250 * 264.76856 * 14 13 12 44 44 H 1.08997 * 109.47768 * 50.12089 * 16 15 14 45 45 H 1.09000 * 109.47221 * 170.12279 * 16 15 14 46 46 H 0.97001 * 120.00131 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.45513 * 279.83009 * 25 15 14 48 48 H 1.09000 * 110.45596 * 157.26817 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9376 -0.0012 7 1 3.5844 3.4693 -0.8912 8 6 3.4495 3.6848 1.2480 9 7 5.3836 2.8609 -0.0010 10 6 6.2435 3.4226 -1.0511 11 6 7.6216 2.7448 -0.8641 12 6 7.5747 2.3642 0.6248 13 6 8.3051 1.0407 0.8773 14 6 9.4245 1.3967 1.8831 15 7 8.9392 2.6245 2.5662 16 6 10.0548 3.3707 3.1632 17 6 10.6036 2.6004 4.3364 18 1 10.1676 1.6512 4.6108 19 6 11.6632 3.1068 5.0589 20 7 12.1424 2.4343 6.0825 21 14 12.4179 4.7481 4.5839 22 1 11.7226 5.8413 5.3096 23 1 13.8586 4.7533 4.9438 24 1 12.2725 4.9549 3.1205 25 6 8.2862 3.4142 1.4871 26 6 6.1143 2.2666 0.9627 27 8 5.6613 1.7375 1.9556 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3610 3.7419 1.2483 34 1 3.7858 3.1530 2.1380 35 1 3.8664 4.6919 1.2477 36 1 5.8385 3.1883 -2.0355 37 1 6.3342 4.5017 -0.9269 38 1 7.7111 1.8604 -1.4950 39 1 8.4322 3.4466 -1.0603 40 1 7.6243 0.3077 1.3102 41 1 8.7324 0.6598 -0.0503 42 1 9.5594 0.5894 2.6029 43 1 10.3583 1.5960 1.3575 44 1 10.8397 3.5078 2.4194 45 1 9.7009 4.3445 3.5015 46 1 12.8876 2.7908 6.5909 47 1 9.0338 3.9469 0.8993 48 1 7.5642 4.1128 1.9100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:46 Heat of formation + Delta-G solvation = -99.623412 kcal Electronic energy + Delta-G solvation = -28952.471031 eV Core-core repulsion = 25008.037874 eV Total energy + Delta-G solvation = -3944.433156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35030 -40.29861 -37.74860 -36.67386 -36.21132 -34.30197 -32.68031 -31.93434 -30.89839 -29.06519 -28.12797 -26.99424 -25.43654 -23.84851 -23.24472 -22.15162 -21.91588 -20.55037 -19.98386 -18.87248 -17.73765 -17.09904 -16.86134 -16.68795 -16.14437 -15.85367 -15.14298 -14.85826 -14.64744 -14.22169 -14.10283 -13.89638 -13.70599 -13.35302 -13.27100 -13.08709 -12.87920 -12.70818 -12.52048 -12.44305 -12.23617 -12.09638 -12.00739 -11.90014 -11.79739 -11.54260 -11.35484 -10.94794 -10.82185 -10.76548 -10.57705 -10.41797 -10.33772 -10.27320 -9.80270 -9.36421 -9.22824 -8.88302 -8.53339 -7.47269 -6.00831 -3.98068 2.03314 2.15661 2.82428 2.97595 3.30039 3.37066 3.37891 4.19284 4.35840 4.42781 4.44519 4.58604 4.62219 4.63472 4.68658 4.70927 4.88689 4.97544 5.10645 5.16084 5.23287 5.30003 5.32086 5.35765 5.44815 5.45293 5.51352 5.63135 5.65292 5.73838 5.80220 5.94517 5.96185 6.03014 6.13779 6.18451 6.22448 6.38045 6.58820 6.61966 6.80916 6.96644 7.04008 7.54009 7.59116 7.89250 7.93095 8.36772 8.68930 9.09970 9.60363 11.12529 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.002890 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.047935 B = 9685.606440 C = 9959.080753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.447 3.553 5 O -0.483 6.483 6 C 0.173 3.827 7 H 0.123 0.877 8 C -0.164 4.164 9 N -0.623 5.623 10 C 0.108 3.892 11 C -0.123 4.123 12 C -0.096 4.096 13 C -0.104 4.104 14 C 0.050 3.950 15 N -0.492 5.492 16 C 0.152 3.848 17 C -0.506 4.506 18 H 0.081 0.919 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.055 3.945 26 C 0.549 3.451 27 O -0.492 6.492 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.039 0.961 44 H -0.009 1.009 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.048 0.952 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.317 2.219 -20.522 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.287 3.713 5 O -0.368 6.368 6 C 0.068 3.932 7 H 0.141 0.859 8 C -0.222 4.222 9 N -0.360 5.360 10 C -0.014 4.014 11 C -0.161 4.161 12 C -0.100 4.100 13 C -0.143 4.143 14 C -0.078 4.078 15 N -0.216 5.216 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.099 0.901 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.193 1.193 25 C -0.074 4.074 26 C 0.336 3.664 27 O -0.364 6.364 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.009 0.991 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.643 1.480 -19.357 28.338 hybrid contribution 1.082 0.937 -0.870 1.675 sum -19.561 2.417 -20.227 28.242 Atomic orbital electron populations 1.21800 0.92544 1.02997 1.03471 1.23022 0.95275 0.80173 1.02725 1.86463 1.24275 1.32525 1.84373 1.24109 0.80860 0.93170 0.73168 1.90709 1.60252 1.42571 1.43244 1.20280 0.80400 0.89793 1.02722 0.85894 1.22147 1.02211 1.00852 0.96980 1.48309 1.03500 1.58970 1.25252 1.22146 0.90457 0.98143 0.90658 1.22768 0.96494 1.01733 0.95093 1.21422 0.93523 0.99389 0.95619 1.22272 0.97809 0.94768 0.99437 1.22967 0.94513 0.95122 0.95173 1.65453 1.28015 1.04284 1.23830 1.20345 0.87451 0.94491 0.95191 1.21005 1.14767 1.07615 1.11072 0.90117 1.24912 0.96559 0.97115 0.94820 1.69899 1.26118 1.38625 1.19303 0.86862 0.78663 0.84981 0.79237 1.20170 1.21220 1.19338 1.22867 0.97316 0.94572 0.92682 1.20276 0.88256 0.76052 0.81771 1.90709 1.76635 1.42120 1.26906 0.90233 0.91364 0.91563 0.91386 0.91067 0.90171 0.90162 0.90558 0.90639 0.90677 0.89683 0.88882 0.90394 0.91177 0.89700 0.94232 0.99099 0.95794 0.92703 0.93443 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -3.93 10.12 -39.27 -0.40 -4.33 16 4 C 0.45 5.79 6.97 36.00 0.25 6.05 16 5 O -0.48 -8.06 14.67 -23.91 -0.35 -8.42 16 6 C 0.17 1.81 3.39 -69.09 -0.23 1.57 16 7 H 0.12 0.79 8.07 -51.93 -0.42 0.37 16 8 C -0.16 -1.65 9.13 37.15 0.34 -1.31 16 9 N -0.62 -7.65 2.63 -166.28 -0.44 -8.08 16 10 C 0.11 0.94 7.32 -2.93 -0.02 0.92 16 11 C -0.12 -1.25 6.20 -25.44 -0.16 -1.41 16 12 C -0.10 -1.45 0.83 -155.17 -0.13 -1.58 16 13 C -0.10 -1.73 6.28 -25.74 -0.16 -1.89 16 14 C 0.05 1.01 5.99 -1.99 -0.01 1.00 16 15 N -0.49 -10.95 5.36 -231.60 -1.24 -12.19 16 16 C 0.15 3.79 3.64 -4.98 -0.02 3.77 16 17 C -0.51 -14.88 9.37 -34.44 -0.32 -15.20 16 18 H 0.08 2.61 7.86 -52.49 -0.41 2.20 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 21 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 C 0.05 0.95 5.67 -2.57 -0.01 0.93 16 26 C 0.55 9.12 5.27 -11.23 -0.06 9.06 16 27 O -0.49 -10.33 15.01 -8.31 -0.12 -10.45 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.08 1.11 6.77 -51.93 -0.35 0.76 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.80 7.62 -51.92 -0.40 0.41 16 39 H 0.09 0.81 7.46 -51.93 -0.39 0.42 16 40 H 0.08 1.45 7.46 -51.92 -0.39 1.06 16 41 H 0.07 0.95 7.44 -51.93 -0.39 0.56 16 42 H 0.08 1.85 7.96 -51.93 -0.41 1.44 16 43 H 0.04 0.76 7.82 -51.93 -0.41 0.36 16 44 H -0.01 -0.21 6.94 -51.93 -0.36 -0.57 16 45 H 0.02 0.60 7.56 -51.93 -0.39 0.21 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 47 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 48 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -37.41 381.66 -8.79 -46.20 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.07 Total: -2.19 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.03 Total: 4.06 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.91 Total: -47.69 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.87 Total: -23.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.41 -8.79 -46.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.424 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds