Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.46950 * 2 1 4 4 C 1.34235 * 117.00198 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99414 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00126 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46701 * 299.99786 * 6 4 3 8 8 C 1.52994 * 109.47017 * 59.99742 * 6 4 3 9 9 N 1.46495 * 109.46853 * 179.97438 * 6 4 3 10 10 C 1.46887 * 124.37059 * 120.01498 * 9 6 4 11 11 C 1.54712 * 105.51738 * 196.78086 * 10 9 6 12 12 C 1.53755 * 101.43819 * 335.27612 * 11 10 9 13 13 C 1.53260 * 111.02215 * 145.23825 * 12 11 10 14 14 C 1.54638 * 104.67386 * 120.62072 * 13 12 11 15 15 N 1.48651 * 104.63840 * 23.67902 * 14 13 12 16 16 C 1.46896 * 111.00003 * 201.49694 * 15 14 13 17 17 C 1.50703 * 109.46909 * 290.11799 * 16 15 14 18 18 H 1.07996 * 120.00055 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00152 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00227 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99924 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47214 * 89.99834 * 21 19 17 23 23 H 1.48499 * 109.47536 * 209.99668 * 21 19 17 24 24 H 1.48500 * 109.47280 * 330.00128 * 21 19 17 25 25 C 1.48810 * 104.37864 * 321.14424 * 15 14 13 26 26 C 1.34756 * 124.37443 * 299.97462 * 9 6 4 27 27 O 1.21283 * 125.12999 * 359.00075 * 26 9 6 28 28 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47199 * 300.00321 * 1 2 3 30 30 H 1.08999 * 109.47209 * 60.00282 * 1 2 3 31 31 H 1.08995 * 109.47375 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47209 * 119.99718 * 2 1 3 33 33 H 1.08997 * 109.47178 * 299.99730 * 8 6 4 34 34 H 1.08998 * 109.47349 * 60.00441 * 8 6 4 35 35 H 1.09002 * 109.46964 * 179.97438 * 8 6 4 36 36 H 1.08992 * 110.23629 * 315.79215 * 10 9 6 37 37 H 1.09000 * 110.23397 * 77.77652 * 10 9 6 38 38 H 1.09007 * 111.01721 * 93.54192 * 11 10 9 39 39 H 1.08997 * 111.01543 * 217.42391 * 11 10 9 40 40 H 1.09009 * 110.39244 * 239.41872 * 13 12 11 41 41 H 1.08997 * 110.39507 * 1.70269 * 13 12 11 42 42 H 1.09001 * 110.40436 * 142.46764 * 14 13 12 43 43 H 1.08997 * 110.40250 * 264.76856 * 14 13 12 44 44 H 1.08997 * 109.47768 * 50.12089 * 16 15 14 45 45 H 1.09000 * 109.47221 * 170.12279 * 16 15 14 46 46 H 0.97001 * 120.00131 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.45513 * 279.83009 * 25 15 14 48 48 H 1.09000 * 110.45596 * 157.26817 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9376 -0.0012 7 1 3.5844 3.4693 -0.8912 8 6 3.4495 3.6848 1.2480 9 7 5.3836 2.8609 -0.0010 10 6 6.2435 3.4226 -1.0511 11 6 7.6216 2.7448 -0.8641 12 6 7.5747 2.3642 0.6248 13 6 8.3051 1.0407 0.8773 14 6 9.4245 1.3967 1.8831 15 7 8.9392 2.6245 2.5662 16 6 10.0548 3.3707 3.1632 17 6 10.6036 2.6004 4.3364 18 1 10.1676 1.6512 4.6108 19 6 11.6632 3.1068 5.0589 20 7 12.1424 2.4343 6.0825 21 14 12.4179 4.7481 4.5839 22 1 11.7226 5.8413 5.3096 23 1 13.8586 4.7533 4.9438 24 1 12.2725 4.9549 3.1205 25 6 8.2862 3.4142 1.4871 26 6 6.1143 2.2666 0.9627 27 8 5.6613 1.7375 1.9556 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3610 3.7419 1.2483 34 1 3.7858 3.1530 2.1380 35 1 3.8664 4.6919 1.2477 36 1 5.8385 3.1883 -2.0355 37 1 6.3342 4.5017 -0.9269 38 1 7.7111 1.8604 -1.4950 39 1 8.4322 3.4466 -1.0603 40 1 7.6243 0.3077 1.3102 41 1 8.7324 0.6598 -0.0503 42 1 9.5594 0.5894 2.6029 43 1 10.3583 1.5960 1.3575 44 1 10.8397 3.5078 2.4194 45 1 9.7009 4.3445 3.5015 46 1 12.8876 2.7908 6.5909 47 1 9.0338 3.9469 0.8993 48 1 7.5642 4.1128 1.9100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -127.006341 kcal Electronic energy + Delta-G solvation = -28953.658444 eV Core-core repulsion = 25008.037874 eV Total energy + Delta-G solvation = -3945.620569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40865 -41.33994 -39.10880 -37.74489 -37.35325 -35.61036 -34.53719 -32.86137 -32.19143 -30.22914 -29.56615 -28.51819 -26.31337 -25.09688 -24.21473 -23.67380 -22.79719 -21.95934 -21.40047 -19.97753 -18.92672 -18.70116 -18.08041 -17.76557 -17.26389 -16.80332 -16.63895 -16.26421 -15.86193 -15.55097 -15.30130 -15.12455 -14.84057 -14.65587 -14.56852 -14.48672 -13.81105 -13.70417 -13.56972 -13.48170 -13.36928 -13.28946 -13.06658 -12.95794 -12.84631 -12.66350 -12.56455 -12.52926 -12.33235 -12.05266 -11.89003 -11.77660 -11.61263 -11.58186 -11.48688 -11.45313 -10.79558 -10.57118 -9.82231 -9.14942 -8.29229 -6.34432 1.07195 1.25776 1.34213 1.37617 1.48221 1.72883 2.04376 2.34484 3.03180 3.14393 3.33453 3.50184 3.59362 3.61763 3.87221 3.92717 3.95093 3.95740 4.04335 4.11133 4.24408 4.28689 4.44160 4.51558 4.58695 4.64064 4.66399 4.71487 4.75087 4.77014 4.80879 4.87232 4.89334 4.91513 5.04860 5.07419 5.10219 5.15947 5.16984 5.21761 5.39344 5.50065 5.54254 5.93358 6.04071 6.16118 6.59968 6.63813 6.71628 7.22367 7.29256 8.88326 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.002890 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.047935 B = 9685.606440 C = 9959.080753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.444 3.556 5 O -0.530 6.530 6 C 0.169 3.831 7 H 0.178 0.822 8 C -0.158 4.158 9 N -0.616 5.616 10 C 0.104 3.896 11 C -0.114 4.114 12 C -0.098 4.098 13 C -0.094 4.094 14 C 0.052 3.948 15 N -0.530 5.530 16 C 0.165 3.835 17 C -0.522 4.522 18 H 0.023 0.977 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.241 1.241 25 C 0.059 3.941 26 C 0.537 3.463 27 O -0.555 6.555 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.044 0.956 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.004 0.996 45 H 0.028 0.972 46 H 0.267 0.733 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.115 5.790 -24.942 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.286 3.714 5 O -0.418 6.418 6 C 0.065 3.935 7 H 0.195 0.805 8 C -0.216 4.216 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.151 4.151 12 C -0.102 4.102 13 C -0.133 4.133 14 C -0.076 4.076 15 N -0.255 5.255 16 C 0.038 3.962 17 C -0.560 4.560 18 H 0.042 0.958 19 C -0.194 4.194 20 N -0.593 5.593 21 Si 0.780 3.220 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.164 1.164 25 C -0.069 4.069 26 C 0.325 3.675 27 O -0.432 6.432 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.021 0.979 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.490 5.079 -23.847 32.500 hybrid contribution 1.214 -0.318 0.574 1.380 sum -20.275 4.761 -23.273 31.231 Atomic orbital electron populations 1.21806 0.89729 1.04366 1.04041 1.23239 0.97439 0.79428 1.01848 1.86471 1.23376 1.33370 1.83780 1.24767 0.81095 0.93855 0.71723 1.90696 1.61279 1.44240 1.45564 1.20709 0.79291 0.88580 1.04969 0.80473 1.22105 1.03664 1.00926 0.94878 1.48418 1.04578 1.57347 1.24808 1.22552 0.88767 0.99412 0.90961 1.22841 0.98593 1.03099 0.90607 1.21444 0.92267 0.97406 0.99088 1.22176 0.96142 0.95392 0.99567 1.22874 0.96409 0.93400 0.94959 1.65262 1.27410 1.05624 1.27163 1.20071 0.88482 0.93902 0.93739 1.21241 1.15228 1.06266 1.13261 0.95813 1.26005 0.96920 1.02114 0.94409 1.70083 1.27013 1.41234 1.20933 0.85570 0.77482 0.78544 0.80443 1.19086 1.20591 1.16433 1.22911 0.97536 0.94692 0.91795 1.20625 0.89376 0.75765 0.81721 1.90676 1.77782 1.44996 1.29716 0.88500 0.91400 0.90281 0.91192 0.93170 0.88020 0.94802 0.88707 0.87143 0.87729 0.88515 0.86220 0.93742 0.87524 0.93843 0.93121 0.97871 0.95354 0.92372 0.90477 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 1.00 6.19 71.98 0.45 1.45 16 3 O -0.35 -7.42 10.12 -51.47 -0.52 -7.95 16 4 C 0.44 11.21 6.97 71.24 0.50 11.70 16 5 O -0.53 -18.14 14.67 26.91 0.39 -17.74 16 6 C 0.17 3.07 3.39 44.24 0.15 3.22 16 7 H 0.18 1.30 8.07 -2.39 -0.02 1.28 16 8 C -0.16 -2.94 9.13 71.98 0.66 -2.28 16 9 N -0.62 -13.50 2.63 -798.38 -2.10 -15.60 16 10 C 0.10 1.22 7.32 86.89 0.64 1.86 16 11 C -0.11 -1.78 6.20 31.43 0.19 -1.59 16 12 C -0.10 -2.82 0.83 -52.61 -0.04 -2.86 16 13 C -0.09 -3.16 6.28 31.24 0.20 -2.96 16 14 C 0.05 2.15 5.99 86.52 0.52 2.67 16 15 N -0.53 -24.15 5.36 -886.63 -4.75 -28.91 16 16 C 0.17 8.26 3.64 85.56 0.31 8.57 16 17 C -0.52 -32.14 9.37 25.60 0.24 -31.90 16 18 H 0.02 1.67 7.86 -2.91 -0.02 1.65 16 19 C 0.00 0.13 5.47 84.66 0.46 0.60 16 20 N -0.95 -62.05 13.96 21.45 0.30 -61.75 16 21 Si 0.96 44.60 27.47 68.60 1.88 46.48 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 25 C 0.06 1.94 5.67 86.06 0.49 2.43 16 26 C 0.54 17.77 5.27 87.51 0.46 18.23 16 27 O -0.56 -24.81 15.01 10.22 0.15 -24.65 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.03 0.96 6.77 -2.39 -0.02 0.94 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.34 7.62 -2.38 -0.02 1.32 16 39 H 0.12 1.31 7.46 -2.39 -0.02 1.29 16 40 H 0.04 1.77 7.46 -2.38 -0.02 1.75 16 41 H 0.11 2.72 7.44 -2.39 -0.02 2.70 16 42 H 0.04 2.10 7.96 -2.39 -0.02 2.08 16 43 H 0.05 1.96 7.82 -2.39 -0.02 1.94 16 44 H 0.00 0.17 6.94 -2.39 -0.02 0.16 16 45 H 0.03 1.38 7.56 -2.39 -0.02 1.36 16 46 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 47 H 0.08 2.10 7.32 -2.39 -0.02 2.08 16 48 H 0.07 2.30 7.85 -2.39 -0.02 2.29 16 Total: -1.00 -91.95 381.66 2.19 -89.76 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.88 Total: 12.02 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.95 Total: 8.34 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -6.56 Total: -106.26 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: 0.03 Total: -50.34 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -91.95 2.19 -89.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.241 kcal (2) G-P(sol) polarization free energy of solvation -91.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds