Wall clock time and date at job start Fri Apr 10 2020 18:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99636 * 2 1 4 4 O 1.20822 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99724 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47213 * 299.99817 * 5 3 2 7 7 C 1.52997 * 109.47316 * 60.00046 * 5 3 2 8 8 C 1.53005 * 109.46778 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.47012 * 174.99887 * 8 5 3 10 10 C 1.46878 * 124.37207 * 89.99791 * 9 8 5 11 11 C 1.54700 * 105.51900 * 163.15346 * 10 9 8 12 12 C 1.53614 * 101.50996 * 24.54264 * 11 10 9 13 13 C 1.53611 * 110.85726 * 96.86996 * 12 11 10 14 14 C 1.55161 * 102.65790 * 142.30248 * 13 12 11 15 15 N 1.48626 * 103.36353 * 323.41654 * 14 13 12 16 16 C 1.46906 * 110.99872 * 159.14414 * 15 14 13 17 17 C 1.50699 * 109.47140 * 52.55281 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99892 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00241 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47135 * 90.00125 * 21 19 17 23 23 H 1.48503 * 109.47215 * 210.00315 * 21 19 17 24 24 H 1.48508 * 109.46958 * 330.00276 * 21 19 17 25 25 C 1.48191 * 105.86298 * 38.60646 * 15 14 13 26 26 C 1.34749 * 124.37176 * 269.97841 * 9 8 5 27 27 O 1.21277 * 125.13443 * 1.05520 * 26 9 8 28 28 H 1.08996 * 109.47146 * 299.99959 * 1 2 3 29 29 H 1.09000 * 109.47429 * 60.00425 * 1 2 3 30 30 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47358 * 299.99922 * 7 5 3 32 32 H 1.09004 * 109.47166 * 59.99743 * 7 5 3 33 33 H 1.08993 * 109.47099 * 179.97438 * 7 5 3 34 34 H 1.08995 * 109.46889 * 55.00242 * 8 5 3 35 35 H 1.08997 * 109.47074 * 295.00249 * 8 5 3 36 36 H 1.09006 * 110.23684 * 44.14633 * 10 9 8 37 37 H 1.09000 * 110.31594 * 282.21003 * 10 9 8 38 38 H 1.09000 * 111.01831 * 266.48157 * 11 10 9 39 39 H 1.09006 * 111.01875 * 142.59797 * 11 10 9 40 40 H 1.08996 * 110.77387 * 260.59204 * 13 12 11 41 41 H 1.08998 * 110.77295 * 23.82425 * 13 12 11 42 42 H 1.09006 * 110.64095 * 204.95284 * 14 13 12 43 43 H 1.08999 * 110.64528 * 81.88669 * 14 13 12 44 44 H 1.09004 * 109.47040 * 172.55219 * 16 15 14 45 45 H 1.09000 * 109.47033 * 292.55171 * 16 15 14 46 46 H 0.97002 * 119.99998 * 180.02562 * 20 19 17 47 47 H 1.09003 * 110.02064 * 94.19411 * 25 15 14 48 48 H 1.08997 * 110.01818 * 215.54716 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8909 7 6 4.1139 0.5812 -1.2483 8 6 4.0000 2.7423 -0.0002 9 7 5.4579 2.8206 0.1208 10 6 6.3849 2.8342 -1.0184 11 6 7.7282 3.3526 -0.4527 12 6 7.5984 2.9829 1.0326 13 6 8.3066 1.6524 1.3289 14 6 8.9284 1.9024 2.7284 15 7 9.3393 3.3296 2.6716 16 6 9.4908 3.8879 4.0220 17 6 10.4049 3.0044 4.8312 18 1 10.8305 2.1167 4.3870 19 6 10.6972 3.3288 6.1390 20 7 11.4953 2.5580 6.8450 21 14 9.9606 4.8638 6.9076 22 1 8.6618 4.5249 7.5429 23 1 10.8901 5.3975 7.9355 24 1 9.7444 5.8893 5.8554 25 6 8.2684 4.0302 1.9245 26 6 6.1215 2.8899 1.2915 27 8 5.6045 2.8782 2.3885 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8049 -0.4641 -1.2482 32 1 3.7245 1.0751 -2.1385 33 1 5.2023 0.6387 -1.2480 34 1 3.5374 3.2583 0.8411 35 1 3.6868 3.2132 -0.9320 36 1 6.0185 3.5058 -1.7948 37 1 6.5076 1.8277 -1.4185 38 1 7.8160 4.4315 -0.5809 39 1 8.5712 2.8362 -0.9119 40 1 7.5894 0.8325 1.3655 41 1 9.0814 1.4536 0.5885 42 1 9.7944 1.2592 2.8846 43 1 8.1866 1.7470 3.5118 44 1 9.9178 4.8886 3.9557 45 1 8.5151 3.9405 4.5050 46 1 11.7006 2.7860 7.7653 47 1 7.5406 4.4486 2.6198 48 1 8.6979 4.8231 1.3122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:19 Heat of formation + Delta-G solvation = -104.714013 kcal Electronic energy + Delta-G solvation = -28612.507923 eV Core-core repulsion = 24667.854021 eV Total energy + Delta-G solvation = -3944.653901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31572 -40.74924 -37.80570 -37.00190 -36.51686 -34.92744 -32.93660 -31.67420 -29.88603 -28.40350 -28.18171 -26.96889 -26.82575 -24.40477 -23.17542 -22.31681 -21.38261 -20.47727 -19.95304 -18.85995 -18.06782 -17.28982 -16.76749 -16.69198 -16.30221 -16.05420 -15.60323 -15.09545 -14.76475 -14.25557 -14.09638 -13.95965 -13.90618 -13.62938 -13.30350 -13.20777 -13.08423 -12.89349 -12.54542 -12.53077 -12.25060 -12.18066 -11.97792 -11.76159 -11.56367 -11.54293 -11.21266 -11.17581 -10.96873 -10.88542 -10.74121 -10.62985 -10.44241 -10.12929 -9.72925 -9.55843 -9.13552 -8.91509 -8.55336 -7.48767 -6.02476 -4.00168 1.82767 2.17258 2.57296 2.93276 3.34028 3.40523 3.44188 4.16939 4.18879 4.33920 4.44351 4.46614 4.49298 4.59514 4.72181 4.80441 4.81664 4.84156 5.03315 5.06413 5.10956 5.14416 5.21535 5.26823 5.32326 5.36351 5.43145 5.56318 5.66247 5.73172 5.77878 5.83118 5.91711 5.99760 6.03830 6.13907 6.22661 6.41088 6.59499 6.68868 6.87316 6.94577 7.07911 7.34698 7.51249 7.89143 7.96673 8.16052 8.64778 9.03255 9.59581 11.10306 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002858 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.877332 B = 9794.435935 C =10438.001125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.506 6.506 5 C -0.104 4.104 6 H 0.115 0.885 7 C -0.146 4.146 8 C 0.144 3.856 9 N -0.623 5.623 10 C 0.100 3.900 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.101 4.101 14 C 0.055 3.945 15 N -0.503 5.503 16 C 0.151 3.849 17 C -0.513 4.513 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.053 3.947 26 C 0.531 3.469 27 O -0.513 6.513 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.031 0.969 45 H -0.011 1.011 46 H 0.263 0.737 47 H 0.046 0.954 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 -4.137 -22.168 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.394 6.394 5 C -0.125 4.125 6 H 0.133 0.867 7 C -0.203 4.203 8 C 0.022 3.978 9 N -0.358 5.358 10 C -0.022 4.022 11 C -0.155 4.155 12 C -0.108 4.108 13 C -0.140 4.140 14 C -0.073 4.073 15 N -0.227 5.227 16 C 0.024 3.976 17 C -0.551 4.551 18 H 0.099 0.901 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.076 4.076 26 C 0.319 3.681 27 O -0.387 6.387 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.007 0.993 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.611 -3.786 -21.636 28.153 hybrid contribution -1.501 0.757 1.025 1.969 sum -19.112 -3.028 -20.611 28.271 Atomic orbital electron populations 1.23294 0.76166 1.03817 1.02642 1.86513 1.23538 1.33314 1.83934 1.23614 0.91668 0.81405 0.71905 1.90681 1.67209 1.36294 1.45202 1.21547 0.87353 1.00290 1.03263 0.86716 1.21876 1.02415 1.01000 0.94981 1.21119 0.79163 0.93037 1.04505 1.48355 1.05454 1.74353 1.07675 1.22290 0.89571 1.01614 0.88772 1.22700 0.96740 1.02561 0.93529 1.21561 0.92528 0.99764 0.96948 1.22446 0.98586 0.93275 0.99650 1.23064 0.99196 0.91453 0.93616 1.64926 1.37876 1.01810 1.18060 1.20383 0.95656 0.96604 0.84923 1.21065 1.27760 1.10346 0.95977 0.90069 1.24891 0.94785 0.96506 0.97023 1.69892 1.36314 1.38169 1.09563 0.86863 0.79250 0.84261 0.79433 1.20289 1.21167 1.19084 1.22759 0.93413 0.95304 0.96174 1.20643 0.89348 0.74558 0.83550 1.90747 1.74079 1.48880 1.24953 0.91763 0.91851 0.87974 0.91026 0.91977 0.90391 0.88986 0.89398 0.90376 0.90828 0.89710 0.88557 0.91739 0.89810 0.89541 0.93481 0.95137 0.99327 0.92683 0.93535 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.34 10.47 -39.28 -0.41 -3.75 16 3 C 0.47 4.95 7.26 36.01 0.26 5.21 16 4 O -0.51 -6.51 15.67 -18.75 -0.29 -6.80 16 5 C -0.10 -0.96 3.04 -91.77 -0.28 -1.24 16 6 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -0.95 8.80 37.16 0.33 -0.62 16 8 C 0.14 1.47 4.71 -4.04 -0.02 1.45 16 9 N -0.62 -6.75 2.72 -172.53 -0.47 -7.22 16 10 C 0.10 0.75 6.70 -2.94 -0.02 0.73 16 11 C -0.12 -1.07 6.19 -25.52 -0.16 -1.23 16 12 C -0.10 -1.45 0.77 -155.25 -0.12 -1.57 16 13 C -0.10 -1.45 6.22 -25.27 -0.16 -1.60 16 14 C 0.05 1.08 5.55 -1.72 -0.01 1.07 16 15 N -0.50 -10.70 5.40 -232.04 -1.25 -11.95 16 16 C 0.15 3.83 3.86 -4.97 -0.02 3.81 16 17 C -0.51 -14.84 9.11 -34.44 -0.31 -15.16 16 18 H 0.08 2.50 6.78 -52.48 -0.36 2.14 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 21 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 25 C 0.05 0.92 6.02 -3.11 -0.02 0.90 16 26 C 0.53 8.02 6.60 -11.22 -0.07 7.94 16 27 O -0.51 -10.11 17.15 5.56 0.10 -10.01 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.47 5.44 -51.93 -0.28 0.19 16 34 H 0.09 1.16 7.76 -51.93 -0.40 0.76 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.43 6.18 -51.93 -0.32 0.11 16 38 H 0.08 0.73 7.59 -51.93 -0.39 0.33 16 39 H 0.10 0.74 7.45 -51.93 -0.39 0.35 16 40 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.08 1.02 7.46 -51.93 -0.39 0.64 16 42 H 0.09 1.78 7.17 -51.93 -0.37 1.41 16 43 H 0.05 1.05 8.01 -51.93 -0.42 0.63 16 44 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 45 H -0.01 -0.29 7.25 -51.93 -0.38 -0.66 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.05 0.92 6.87 -51.93 -0.36 0.57 16 48 H 0.08 1.21 7.40 -51.93 -0.38 0.82 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -35.82 378.24 -7.92 -43.74 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.76 Total: -3.10 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 0.37 Total: 2.96 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.95 Total: -46.37 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.61 Total: -20.57 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.82 -7.92 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.973 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds