Wall clock time and date at job start Fri Apr 10 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20756 * 119.99960 * 2 1 4 4 C 1.50697 * 119.99968 * 179.97438 * 2 1 3 5 5 H 1.09006 * 109.47073 * 47.27394 * 4 2 1 6 6 C 1.52995 * 109.47412 * 287.27466 * 4 2 1 7 7 N 1.46498 * 109.47042 * 167.26991 * 4 2 1 8 8 C 1.46998 * 124.35525 * 231.82125 * 7 4 2 9 9 C 1.53559 * 105.28858 * 163.82296 * 8 7 4 10 10 C 1.53757 * 102.71862 * 24.52205 * 9 8 7 11 11 C 1.34535 * 124.35529 * 51.86901 * 7 4 2 12 12 O 1.21285 * 124.94885 * 0.25310 * 11 7 4 13 13 C 1.54395 * 109.95090 * 141.31563 * 9 8 7 14 14 O 1.36880 * 110.01191 * 50.56191 * 13 9 8 15 15 C 1.43361 * 117.84384 * 60.74051 * 14 13 9 16 16 C 1.50995 * 107.53868 * 277.43433 * 15 14 13 17 17 N 1.47494 * 111.64430 * 94.33517 * 16 15 14 18 18 C 1.46904 * 111.00073 * 193.59968 * 17 16 15 19 19 C 1.50699 * 109.47477 * 286.74281 * 18 17 16 20 20 H 1.07999 * 119.99776 * 6.51156 * 19 18 17 21 21 C 1.37870 * 120.00396 * 186.51679 * 19 18 17 22 22 N 1.31515 * 120.00444 * 197.48898 * 21 19 18 23 23 Si 1.86808 * 119.99759 * 17.48363 * 21 19 18 24 24 H 1.48492 * 109.46978 * 85.66459 * 23 21 19 25 25 H 1.48500 * 109.46983 * 205.66354 * 23 21 19 26 26 H 1.48503 * 109.47173 * 325.66402 * 23 21 19 27 27 C 1.48533 * 113.36078 * 319.33055 * 17 16 15 28 28 H 1.08999 * 109.47309 * 270.00127 * 1 2 3 29 29 H 1.09002 * 109.46864 * 30.00117 * 1 2 3 30 30 H 1.09000 * 109.47096 * 149.99865 * 1 2 3 31 31 H 1.09002 * 109.47516 * 180.02562 * 6 4 2 32 32 H 1.09000 * 109.46958 * 299.99567 * 6 4 2 33 33 H 1.09004 * 109.47375 * 59.99630 * 6 4 2 34 34 H 1.08999 * 110.27966 * 44.87338 * 8 7 4 35 35 H 1.08994 * 110.28714 * 282.77500 * 8 7 4 36 36 H 1.08994 * 110.52484 * 94.65807 * 10 9 8 37 37 H 1.09003 * 110.52563 * 217.39871 * 10 9 8 38 38 H 1.09000 * 109.36001 * 290.43198 * 13 9 8 39 39 H 1.08995 * 109.36305 * 170.69683 * 13 9 8 40 40 H 1.08995 * 109.84860 * 36.94710 * 15 14 13 41 41 H 1.09003 * 109.84331 * 157.93310 * 15 14 13 42 42 H 1.08998 * 109.04726 * 214.89244 * 16 15 14 43 43 H 1.09002 * 109.04561 * 333.77705 * 16 15 14 44 44 H 1.09009 * 109.46810 * 46.74070 * 18 17 16 45 45 H 1.08994 * 109.47396 * 166.73281 * 18 17 16 46 46 H 0.97000 * 120.00183 * 180.02562 * 22 21 19 47 47 H 1.08998 * 108.83694 * 79.34290 * 27 17 16 48 48 H 1.09000 * 108.83648 * 197.79603 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.8383 -1.9687 -0.7541 6 6 2.1446 -1.9603 1.3782 7 7 3.6714 -1.0545 -0.3039 8 6 4.4307 -1.7525 -1.3513 9 6 5.6869 -0.8988 -1.5778 10 6 5.8391 -0.1586 -0.2388 11 6 4.4391 -0.1566 0.3398 12 8 4.0648 0.5516 1.2505 13 6 6.9095 -1.8123 -1.8114 14 8 6.6231 -2.7408 -2.7756 15 6 6.2834 -2.2641 -4.0843 16 6 4.8185 -1.8984 -4.0692 17 7 4.6185 -0.4653 -3.7832 18 6 3.2145 -0.1852 -3.4538 19 6 2.3800 -0.2596 -4.7065 20 1 2.8245 -0.5938 -5.6323 21 6 1.0493 0.0990 -4.6707 22 7 0.2404 -0.2778 -5.6368 23 14 0.3951 1.1201 -3.2497 24 1 0.6143 2.5611 -3.5336 25 1 -1.0582 0.8638 -3.0840 26 1 1.1090 0.7471 -2.0022 27 6 5.5268 0.0576 -2.7307 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.6899 -2.9041 1.3788 32 1 2.5668 -1.2968 2.1329 33 1 1.0948 -2.1468 1.6048 34 1 3.8436 -1.8114 -2.2678 35 1 4.7084 -2.7513 -1.0148 36 1 6.5236 -0.6946 0.4185 37 1 6.1861 0.8616 -0.4034 38 1 7.1621 -2.3226 -0.8820 39 1 7.7568 -1.2068 -2.1330 40 1 6.8817 -1.3855 -4.3250 41 1 6.4616 -3.0474 -4.8211 42 1 4.3838 -2.1311 -5.0413 43 1 4.3126 -2.4878 -3.3045 44 1 2.8563 -0.9216 -2.7343 45 1 3.1346 0.8126 -3.0227 46 1 -0.6958 -0.0252 -5.6117 47 1 6.5055 0.2456 -3.1721 48 1 5.1244 0.9979 -2.3540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:27 Heat of formation + Delta-G solvation = -48.104278 kcal Electronic energy + Delta-G solvation = -31576.016020 eV Core-core repulsion = 27633.816901 eV Total energy + Delta-G solvation = -3942.199119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57620 -39.64887 -38.26163 -36.57299 -35.46482 -34.31897 -32.54260 -31.46279 -29.73936 -29.29179 -27.90528 -27.34233 -25.59339 -25.33064 -23.97721 -21.88701 -20.78640 -20.26684 -19.37330 -18.47174 -17.16056 -16.82300 -16.74001 -16.23814 -16.06633 -15.72514 -15.21049 -14.98705 -14.62154 -14.36332 -14.29132 -14.03824 -13.83082 -13.32879 -13.27741 -12.86393 -12.85350 -12.68548 -12.37530 -12.15647 -12.08942 -11.81944 -11.71906 -11.63139 -11.44395 -11.34449 -11.33097 -11.15864 -10.85484 -10.51872 -10.34883 -10.15541 -9.81119 -9.65030 -9.52151 -9.45054 -9.19063 -8.42958 -8.32308 -7.37217 -6.14257 -4.07024 2.28835 2.88604 3.11056 3.22451 3.33871 3.43645 3.81214 4.13830 4.34405 4.38217 4.41767 4.67462 4.76937 4.92349 5.02361 5.08828 5.15720 5.16810 5.21528 5.34252 5.41965 5.46797 5.50277 5.51545 5.55152 5.57243 5.59937 5.66477 5.71929 5.76842 5.85320 5.89137 6.01117 6.06885 6.13367 6.17895 6.27489 6.50804 6.69785 6.80747 6.82985 7.37098 7.48433 7.57827 7.74775 7.84448 7.94421 8.51190 8.55771 8.97454 9.50430 10.96938 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.008356 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.179934 B = 3350.045974 C = 5216.098421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.347 3.653 3 O -0.418 6.418 4 C 0.108 3.892 5 H 0.114 0.886 6 C -0.155 4.155 7 N -0.607 5.607 8 C 0.079 3.921 9 C -0.142 4.142 10 C -0.138 4.138 11 C 0.524 3.476 12 O -0.520 6.520 13 C 0.095 3.905 14 O -0.387 6.387 15 C 0.062 3.938 16 C 0.016 3.984 17 N -0.529 5.529 18 C 0.166 3.834 19 C -0.516 4.516 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.890 5.890 23 Si 0.856 3.144 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.248 1.248 27 C 0.063 3.937 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.057 0.943 44 H -0.003 1.003 45 H 0.023 0.977 46 H 0.263 0.737 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -6.916 10.686 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.219 3.781 3 O -0.288 6.288 4 C 0.004 3.996 5 H 0.132 0.868 6 C -0.213 4.213 7 N -0.342 5.342 8 C -0.042 4.042 9 C -0.144 4.144 10 C -0.179 4.179 11 C 0.312 3.688 12 O -0.395 6.395 13 C 0.017 3.983 14 O -0.305 6.305 15 C -0.013 4.013 16 C -0.111 4.111 17 N -0.252 5.252 18 C 0.041 3.959 19 C -0.554 4.554 20 H 0.096 0.904 21 C -0.129 4.129 22 N -0.528 5.528 23 Si 0.683 3.317 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.172 1.172 27 C -0.065 4.065 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.014 0.986 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.655 -5.914 10.711 14.987 hybrid contribution -0.881 0.518 1.164 1.549 sum 7.774 -5.396 11.875 15.184 Atomic orbital electron populations 1.22419 0.94489 1.05056 1.03941 1.24497 0.91715 0.90294 0.71643 1.90472 1.71235 1.34276 1.32792 1.21412 0.81569 0.97239 0.99370 0.86795 1.22022 1.02816 1.01081 0.95405 1.48193 1.09107 1.40271 1.36613 1.23272 0.92850 0.94748 0.93361 1.22606 0.97146 0.97932 0.96761 1.22267 0.96049 1.03206 0.96340 1.20739 0.87410 0.78685 0.81992 1.90683 1.77581 1.41612 1.29632 1.21867 0.93411 0.90952 0.92094 1.86453 1.88621 1.35430 1.20003 1.22656 0.95503 1.00011 0.83126 1.22751 0.95782 0.89261 1.03286 1.62399 1.07294 1.15367 1.40184 1.20376 0.83579 0.95261 0.96704 1.20957 0.93385 1.45105 0.95929 0.90362 1.24876 0.96514 0.95639 0.95889 1.69980 1.04685 1.43953 1.34184 0.87363 0.77813 0.82097 0.84436 1.20622 1.21596 1.17233 1.22146 0.98406 0.96879 0.89099 0.89091 0.89843 0.89621 0.91309 0.91334 0.90867 0.85355 0.91148 0.88160 0.88085 0.89053 0.93729 0.91764 0.88325 0.89158 0.92536 0.98592 0.95852 0.92731 0.91224 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.92 9.02 36.01 0.32 -2.60 16 2 C 0.35 6.14 4.46 -29.04 -0.13 6.01 16 3 O -0.42 -9.13 13.48 -17.47 -0.24 -9.37 16 4 C 0.11 1.64 2.93 -69.09 -0.20 1.44 16 5 H 0.11 1.59 8.08 -51.93 -0.42 1.17 16 6 C -0.16 -1.85 9.25 37.15 0.34 -1.51 16 7 N -0.61 -9.76 2.60 -166.43 -0.43 -10.19 16 8 C 0.08 1.16 4.13 -3.48 -0.01 1.15 16 9 C -0.14 -1.90 0.60 -154.27 -0.09 -2.00 16 10 C -0.14 -1.83 5.84 -27.11 -0.16 -1.99 16 11 C 0.52 9.06 6.80 -10.71 -0.07 8.99 16 12 O -0.52 -10.77 14.74 -17.91 -0.26 -11.03 16 13 C 0.10 1.06 5.22 37.89 0.20 1.26 16 14 O -0.39 -4.89 9.45 -22.62 -0.21 -5.11 16 15 C 0.06 0.80 6.50 36.15 0.23 1.04 16 16 C 0.02 0.27 4.73 -4.51 -0.02 0.25 16 17 N -0.53 -10.02 4.68 -236.86 -1.11 -11.13 16 18 C 0.17 3.75 3.51 -4.97 -0.02 3.73 16 19 C -0.52 -13.90 9.33 -34.44 -0.32 -14.22 16 20 H 0.08 2.30 7.66 -52.49 -0.40 1.90 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 23 Si 0.86 20.70 25.29 -169.99 -4.30 16.40 16 24 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.25 -5.54 2.61 56.52 0.15 -5.39 16 27 C 0.06 1.01 4.68 -4.10 -0.02 0.99 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.35 6.36 -51.93 -0.33 1.02 16 30 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.96 7.37 -51.93 -0.38 0.57 16 33 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.13 2.20 1.57 -51.93 -0.08 2.12 16 35 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 36 H 0.10 1.06 7.56 -51.93 -0.39 0.67 16 37 H 0.10 1.32 7.75 -51.93 -0.40 0.92 16 38 H 0.09 0.86 7.74 -51.93 -0.40 0.46 16 39 H 0.04 0.45 7.77 -51.93 -0.40 0.04 16 40 H 0.06 0.81 6.76 -51.93 -0.35 0.46 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.64 7.60 -51.93 -0.39 1.24 16 43 H 0.06 0.95 4.55 -51.93 -0.24 0.71 16 44 H 0.00 -0.07 4.78 -51.92 -0.25 -0.32 16 45 H 0.02 0.58 6.10 -51.93 -0.32 0.27 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.07 0.98 6.62 -51.93 -0.34 0.64 16 48 H 0.07 1.27 7.03 -51.93 -0.36 0.91 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -34.06 345.51 -7.99 -42.06 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.37 Total: 4.19 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.05 Total: 4.46 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.77 Total: -46.81 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.71 Total: -25.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.30 Total: 16.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.06 -7.99 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.048 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds