Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34238 * 117.00205 * 2 1 4 4 O 1.20824 * 119.99446 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99889 * 179.97438 * 3 2 1 6 6 H 1.08990 * 109.47465 * 299.99824 * 5 3 2 7 7 C 1.53005 * 109.47094 * 60.00355 * 5 3 2 8 8 C 1.53000 * 109.46738 * 179.97438 * 5 3 2 9 9 N 1.46499 * 109.46840 * 174.99952 * 8 5 3 10 10 C 1.46852 * 124.36786 * 90.00633 * 9 8 5 11 11 C 1.54642 * 105.50590 * 196.85612 * 10 9 8 12 12 C 1.53899 * 101.58406 * 335.22019 * 11 10 9 13 13 C 1.53604 * 110.33550 * 143.78625 * 12 11 10 14 14 C 1.55316 * 102.79496 * 99.54981 * 13 12 11 15 15 C 1.54966 * 101.74151 * 35.03486 * 14 13 12 16 16 N 1.46652 * 110.87500 * 263.47119 * 12 11 10 17 17 C 1.46895 * 110.99970 * 115.73472 * 16 12 11 18 18 C 1.50701 * 109.47417 * 190.00116 * 17 16 12 19 19 H 1.07999 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00059 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00142 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47053 * 60.00241 * 22 20 18 24 24 H 1.48502 * 109.47168 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47137 * 300.00142 * 22 20 18 26 26 C 1.34661 * 124.37088 * 269.69886 * 9 8 5 27 27 O 1.21280 * 125.07503 * 359.17002 * 26 9 8 28 28 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46860 * 300.00268 * 1 2 3 30 30 H 1.09006 * 109.46737 * 59.99838 * 1 2 3 31 31 H 1.09004 * 109.46908 * 299.99611 * 7 5 3 32 32 H 1.09000 * 109.47443 * 59.99455 * 7 5 3 33 33 H 1.09001 * 109.47099 * 179.97438 * 7 5 3 34 34 H 1.09002 * 109.47398 * 295.00279 * 8 5 3 35 35 H 1.09001 * 109.47194 * 55.00459 * 8 5 3 36 36 H 1.09001 * 110.23815 * 315.86076 * 10 9 8 37 37 H 1.08999 * 110.24318 * 77.84139 * 10 9 8 38 38 H 1.09003 * 111.00259 * 93.29381 * 11 10 9 39 39 H 1.08990 * 111.00261 * 217.14813 * 11 10 9 40 40 H 1.09001 * 110.74395 * 217.87585 * 13 12 11 41 41 H 1.09000 * 110.74391 * 341.22076 * 13 12 11 42 42 H 1.09002 * 110.96970 * 276.91452 * 14 13 12 43 43 H 1.09005 * 111.00000 * 153.16433 * 14 13 12 44 44 H 1.09003 * 110.36670 * 204.50214 * 15 14 13 45 45 H 1.08999 * 110.37247 * 82.18155 * 15 14 13 46 46 H 1.09002 * 109.47334 * 310.00045 * 17 16 12 47 47 H 1.09002 * 109.47420 * 69.99892 * 17 16 12 48 48 H 0.97000 * 120.00095 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1139 0.5810 -1.2484 8 6 4.0002 2.7421 -0.0002 9 7 5.4581 2.8202 0.1208 10 6 6.3849 2.8339 -1.0183 11 6 7.7717 2.4895 -0.4270 12 6 7.6038 2.9373 1.0358 13 6 8.3549 1.9826 1.9759 14 6 9.6730 2.7513 2.2655 15 6 9.1831 4.2213 2.2845 16 7 8.1416 4.2872 1.2341 17 6 7.0772 5.2285 1.6064 18 6 7.6132 6.6363 1.5619 19 1 8.6419 6.8139 1.2850 20 6 6.7904 7.6975 1.8745 21 7 5.5378 7.4812 2.2121 22 14 7.4551 9.4424 1.8200 23 1 7.9293 9.7487 0.4465 24 1 6.3790 10.3941 2.1963 25 1 8.5854 9.5716 2.7743 26 6 6.1209 2.8948 1.2906 27 8 5.6009 2.9212 2.3859 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8048 -0.4643 -1.2483 32 1 3.7245 1.0749 -2.1386 33 1 5.2024 0.6384 -1.2482 34 1 3.6871 3.2131 -0.9320 35 1 3.5376 3.2581 0.8411 36 1 6.0911 2.0836 -1.7524 37 1 6.4051 3.8228 -1.4762 38 1 7.9674 1.4190 -0.4878 39 1 8.5592 3.0579 -0.9216 40 1 7.7910 1.8229 2.8950 41 1 8.5617 1.0348 1.4789 42 1 10.4002 2.5925 1.4691 43 1 10.0875 2.4655 3.2323 44 1 10.0043 4.8980 2.0477 45 1 8.7570 4.4667 3.2573 46 1 6.2469 5.1336 0.9066 47 1 6.7298 5.0038 2.6149 48 1 4.9590 8.2278 2.4324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -104.552217 kcal Electronic energy + Delta-G solvation = -29545.682296 eV Core-core repulsion = 25601.035410 eV Total energy + Delta-G solvation = -3944.646885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02020 -40.49779 -37.48146 -36.66581 -36.07222 -34.20614 -33.09853 -31.03913 -30.64938 -27.96962 -27.75902 -26.41082 -26.30896 -24.20306 -23.27287 -22.02754 -20.93578 -20.65593 -20.02854 -18.22574 -17.74723 -16.98660 -16.54832 -16.36629 -15.98594 -15.76811 -15.14863 -14.84493 -14.67105 -14.28167 -14.08043 -13.62797 -13.45407 -13.35606 -13.03458 -12.95731 -12.68539 -12.50747 -12.24963 -12.19657 -12.09085 -11.84011 -11.66251 -11.42633 -11.32022 -11.20165 -11.05828 -10.94660 -10.88059 -10.65496 -10.47372 -10.42467 -10.31477 -10.19207 -9.80373 -9.37583 -9.12895 -8.42658 -8.35617 -7.33916 -5.96005 -3.99429 2.10683 2.46124 3.07032 3.35931 3.40124 3.41190 3.42486 4.44217 4.50494 4.61538 4.70452 4.76461 4.78992 4.90692 4.91603 4.99681 5.09768 5.15160 5.21070 5.33187 5.37972 5.40544 5.50921 5.53937 5.57018 5.61625 5.64972 5.81160 5.93439 5.97524 6.05668 6.11835 6.16092 6.19795 6.25030 6.31526 6.38039 6.62189 6.68726 6.89938 7.15324 7.39576 7.49863 7.62517 7.79278 7.97932 8.17409 8.50244 8.68187 9.07635 9.64151 11.14000 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.004101 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.859296 B = 6825.860234 C = 8303.731029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.500 6.500 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.145 4.145 8 C 0.145 3.855 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.115 4.115 12 C 0.066 3.934 13 C -0.122 4.122 14 C -0.128 4.128 15 C 0.054 3.946 16 N -0.495 5.495 17 C 0.181 3.819 18 C -0.511 4.511 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.526 3.474 27 O -0.520 6.520 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.032 0.968 47 H 0.007 0.993 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -18.210 -8.125 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.387 6.387 5 C -0.121 4.121 6 H 0.130 0.870 7 C -0.202 4.202 8 C 0.022 3.978 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.028 4.028 13 C -0.161 4.161 14 C -0.166 4.166 15 C -0.074 4.074 16 N -0.221 5.221 17 C 0.056 3.944 18 C -0.550 4.550 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 C 0.313 3.687 27 O -0.394 6.394 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.025 0.975 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.783 -17.593 -7.945 19.385 hybrid contribution -0.572 0.937 0.715 1.310 sum -2.355 -16.656 -7.229 18.309 Atomic orbital electron populations 1.23262 0.76475 1.03529 1.02667 1.86501 1.23316 1.33579 1.84230 1.23688 0.91764 0.81327 0.72109 1.90708 1.67104 1.36223 1.44665 1.21543 0.87043 1.00662 1.02822 0.87018 1.21883 1.02426 1.00620 0.95279 1.21052 0.79657 0.92272 1.04816 1.48172 1.05243 1.74091 1.07775 1.22234 0.88969 1.02202 0.88684 1.22628 0.96889 1.00750 0.95038 1.22016 0.90964 0.93620 0.96184 1.22681 0.96534 0.97412 0.99452 1.22774 0.96556 0.96078 1.01233 1.22984 0.95307 0.94673 0.94448 1.63969 1.13338 1.02045 1.42758 1.20081 0.88420 0.90465 0.95394 1.21040 0.97611 0.90228 1.46073 0.91974 1.24997 0.94843 0.99263 0.95401 1.69986 1.05432 1.31554 1.46102 0.86579 0.78366 0.84081 0.78461 1.20199 1.21389 1.20280 1.20931 0.90052 0.74031 0.83652 1.90702 1.74207 1.49159 1.25305 0.88190 0.91828 0.91904 0.91327 0.91973 0.90326 0.89593 0.88822 0.90749 0.90625 0.90678 0.88260 0.90724 0.91006 0.91061 0.91388 0.90471 0.93393 0.95059 0.97538 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.15 10.47 -39.28 -0.41 -4.56 16 3 C 0.47 6.37 7.26 36.01 0.26 6.63 16 4 O -0.50 -8.31 15.67 -18.75 -0.29 -8.60 16 5 C -0.10 -1.26 3.04 -91.77 -0.28 -1.54 16 6 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 7 C -0.14 -1.34 8.51 37.16 0.32 -1.02 16 8 C 0.15 2.29 4.71 -4.04 -0.02 2.27 16 9 N -0.62 -10.29 2.56 -172.50 -0.44 -10.74 16 10 C 0.10 1.36 6.79 -2.99 -0.02 1.34 16 11 C -0.11 -1.52 6.42 -25.40 -0.16 -1.68 16 12 C 0.07 1.17 1.00 -132.19 -0.13 1.04 16 13 C -0.12 -1.86 6.06 -25.19 -0.15 -2.01 16 14 C -0.13 -1.86 7.08 -24.47 -0.17 -2.04 16 15 C 0.05 1.04 6.18 -2.14 -0.01 1.02 16 16 N -0.50 -10.57 4.79 -218.85 -1.05 -11.62 16 17 C 0.18 4.88 3.47 -4.98 -0.02 4.87 16 18 C -0.51 -14.68 8.81 -34.44 -0.30 -14.98 16 19 H 0.06 1.74 7.78 -52.49 -0.41 1.33 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 22 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.53 10.61 4.45 -11.13 -0.05 10.56 16 27 O -0.52 -12.63 16.04 5.56 0.09 -12.54 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 31 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.68 5.65 -51.93 -0.29 0.39 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.82 7.74 -51.93 -0.40 1.41 16 36 H 0.07 0.72 5.89 -51.93 -0.31 0.41 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 39 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 41 H 0.07 0.87 7.39 -51.93 -0.38 0.48 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.05 1.04 7.62 -51.93 -0.40 0.64 16 46 H 0.03 0.91 6.78 -51.93 -0.35 0.56 16 47 H 0.01 0.21 6.89 -51.93 -0.36 -0.15 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -35.93 380.08 -8.32 -44.24 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.88 Total: 0.55 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.22 Total: 7.38 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.75 Total: -49.32 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.62 Total: -25.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.93 -8.32 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.310 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds