Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34238 * 117.00205 * 2 1 4 4 O 1.20824 * 119.99446 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99889 * 179.97438 * 3 2 1 6 6 H 1.08990 * 109.47465 * 299.99824 * 5 3 2 7 7 C 1.53005 * 109.47094 * 60.00355 * 5 3 2 8 8 C 1.53000 * 109.46738 * 179.97438 * 5 3 2 9 9 N 1.46499 * 109.46840 * 174.99952 * 8 5 3 10 10 C 1.46852 * 124.36786 * 90.00633 * 9 8 5 11 11 C 1.54642 * 105.50590 * 196.85612 * 10 9 8 12 12 C 1.53899 * 101.58406 * 335.22019 * 11 10 9 13 13 C 1.53604 * 110.33550 * 143.78625 * 12 11 10 14 14 C 1.55316 * 102.79496 * 99.54981 * 13 12 11 15 15 C 1.54966 * 101.74151 * 35.03486 * 14 13 12 16 16 N 1.46652 * 110.87500 * 263.47119 * 12 11 10 17 17 C 1.46895 * 110.99970 * 115.73472 * 16 12 11 18 18 C 1.50701 * 109.47417 * 190.00116 * 17 16 12 19 19 H 1.07999 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00059 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00142 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47053 * 60.00241 * 22 20 18 24 24 H 1.48502 * 109.47168 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47137 * 300.00142 * 22 20 18 26 26 C 1.34661 * 124.37088 * 269.69886 * 9 8 5 27 27 O 1.21280 * 125.07503 * 359.17002 * 26 9 8 28 28 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46860 * 300.00268 * 1 2 3 30 30 H 1.09006 * 109.46737 * 59.99838 * 1 2 3 31 31 H 1.09004 * 109.46908 * 299.99611 * 7 5 3 32 32 H 1.09000 * 109.47443 * 59.99455 * 7 5 3 33 33 H 1.09001 * 109.47099 * 179.97438 * 7 5 3 34 34 H 1.09002 * 109.47398 * 295.00279 * 8 5 3 35 35 H 1.09001 * 109.47194 * 55.00459 * 8 5 3 36 36 H 1.09001 * 110.23815 * 315.86076 * 10 9 8 37 37 H 1.08999 * 110.24318 * 77.84139 * 10 9 8 38 38 H 1.09003 * 111.00259 * 93.29381 * 11 10 9 39 39 H 1.08990 * 111.00261 * 217.14813 * 11 10 9 40 40 H 1.09001 * 110.74395 * 217.87585 * 13 12 11 41 41 H 1.09000 * 110.74391 * 341.22076 * 13 12 11 42 42 H 1.09002 * 110.96970 * 276.91452 * 14 13 12 43 43 H 1.09005 * 111.00000 * 153.16433 * 14 13 12 44 44 H 1.09003 * 110.36670 * 204.50214 * 15 14 13 45 45 H 1.08999 * 110.37247 * 82.18155 * 15 14 13 46 46 H 1.09002 * 109.47334 * 310.00045 * 17 16 12 47 47 H 1.09002 * 109.47420 * 69.99892 * 17 16 12 48 48 H 0.97000 * 120.00095 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1139 0.5810 -1.2484 8 6 4.0002 2.7421 -0.0002 9 7 5.4581 2.8202 0.1208 10 6 6.3849 2.8339 -1.0183 11 6 7.7717 2.4895 -0.4270 12 6 7.6038 2.9373 1.0358 13 6 8.3549 1.9826 1.9759 14 6 9.6730 2.7513 2.2655 15 6 9.1831 4.2213 2.2845 16 7 8.1416 4.2872 1.2341 17 6 7.0772 5.2285 1.6064 18 6 7.6132 6.6363 1.5619 19 1 8.6419 6.8139 1.2850 20 6 6.7904 7.6975 1.8745 21 7 5.5378 7.4812 2.2121 22 14 7.4551 9.4424 1.8200 23 1 7.9293 9.7487 0.4465 24 1 6.3790 10.3941 2.1963 25 1 8.5854 9.5716 2.7743 26 6 6.1209 2.8948 1.2906 27 8 5.6009 2.9212 2.3859 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8048 -0.4643 -1.2483 32 1 3.7245 1.0749 -2.1386 33 1 5.2024 0.6384 -1.2482 34 1 3.6871 3.2131 -0.9320 35 1 3.5376 3.2581 0.8411 36 1 6.0911 2.0836 -1.7524 37 1 6.4051 3.8228 -1.4762 38 1 7.9674 1.4190 -0.4878 39 1 8.5592 3.0579 -0.9216 40 1 7.7910 1.8229 2.8950 41 1 8.5617 1.0348 1.4789 42 1 10.4002 2.5925 1.4691 43 1 10.0875 2.4655 3.2323 44 1 10.0043 4.8980 2.0477 45 1 8.7570 4.4667 3.2573 46 1 6.2469 5.1336 0.9066 47 1 6.7298 5.0038 2.6149 48 1 4.9590 8.2278 2.4324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -130.663417 kcal Electronic energy + Delta-G solvation = -29546.814563 eV Core-core repulsion = 25601.035410 eV Total energy + Delta-G solvation = -3945.779152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38786 -41.65043 -38.88727 -37.90132 -37.45647 -35.51135 -35.05896 -32.82227 -31.87985 -29.07818 -28.76404 -28.37506 -27.51386 -25.45067 -24.71514 -23.68926 -22.20805 -22.05825 -21.23806 -19.70971 -18.85744 -18.52835 -18.03531 -17.65710 -17.44536 -17.05308 -16.78877 -16.20020 -16.16028 -15.76108 -15.37937 -14.95308 -14.69957 -14.64868 -14.47595 -14.22484 -14.11035 -13.90246 -13.62424 -13.42930 -13.22316 -13.11231 -13.05747 -12.93853 -12.69878 -12.58688 -12.43200 -12.32019 -12.23313 -12.00364 -11.87843 -11.79952 -11.77008 -11.53197 -11.42975 -11.31157 -10.88405 -10.66042 -9.75013 -9.12971 -8.23488 -6.37200 1.01623 1.35616 1.40070 1.41833 1.48562 1.54463 2.17499 2.35975 3.07966 3.18524 3.38555 3.43758 3.58696 3.73320 3.82946 3.83455 3.98989 4.09830 4.24743 4.26372 4.27464 4.30086 4.40108 4.43708 4.61751 4.62462 4.66291 4.69991 4.84594 4.86679 4.91390 4.94606 4.97615 5.08444 5.10438 5.14334 5.19678 5.26541 5.29656 5.32029 5.38440 5.57534 5.63560 5.97192 6.08405 6.15199 6.49117 6.57242 6.80458 7.16261 7.33546 8.87084 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.004101 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.859296 B = 6825.860234 C = 8303.731029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.540 6.540 5 C -0.090 4.090 6 H 0.106 0.894 7 C -0.137 4.137 8 C 0.145 3.855 9 N -0.613 5.613 10 C 0.095 3.905 11 C -0.100 4.100 12 C 0.051 3.949 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.044 3.956 16 N -0.495 5.495 17 C 0.211 3.789 18 C -0.527 4.527 19 H 0.070 0.930 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.260 1.260 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.509 3.491 27 O -0.581 6.581 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.044 0.956 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.006 0.994 46 H 0.001 0.999 47 H -0.051 1.051 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -20.540 -10.978 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.315 3.685 4 O -0.430 6.430 5 C -0.110 4.110 6 H 0.124 0.876 7 C -0.194 4.194 8 C 0.022 3.978 9 N -0.345 5.345 10 C -0.026 4.026 11 C -0.137 4.137 12 C -0.042 4.042 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.084 4.084 16 N -0.220 5.220 17 C 0.085 3.915 18 C -0.565 4.565 19 H 0.088 0.912 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.799 3.201 23 H -0.184 1.184 24 H -0.212 1.212 25 H -0.190 1.190 26 C 0.297 3.703 27 O -0.460 6.460 28 H 0.156 0.844 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.063 0.937 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.025 0.975 46 H 0.018 0.982 47 H -0.033 1.033 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.773 -19.971 -10.859 22.745 hybrid contribution -1.464 1.621 1.630 2.726 sum -0.691 -18.349 -9.229 20.551 Atomic orbital electron populations 1.23592 0.74714 1.05950 1.02410 1.86487 1.24996 1.32029 1.83529 1.23872 0.92144 0.81385 0.71052 1.90697 1.67987 1.37629 1.46692 1.21394 0.86662 0.98155 1.04811 0.87619 1.21904 1.03038 1.01230 0.93196 1.20975 0.79313 0.94648 1.02900 1.48320 1.05830 1.72374 1.08020 1.22567 0.88780 1.03033 0.88252 1.22725 0.96603 1.03711 0.90695 1.22399 0.89284 0.92271 1.00238 1.22734 0.95851 0.98985 0.98109 1.22746 0.96716 0.91481 1.03716 1.23087 0.94591 0.98876 0.91858 1.63944 1.11794 1.03558 1.42708 1.19473 0.89098 0.91702 0.91268 1.21461 0.97946 0.91353 1.45714 0.91213 1.26070 0.94892 1.04547 0.94613 1.70179 1.07225 1.33020 1.47376 0.85357 0.77807 0.77603 0.79381 1.18434 1.21220 1.19001 1.21580 0.91698 0.73414 0.83597 1.90652 1.75550 1.51989 1.27807 0.84386 0.92767 0.91611 0.89399 0.90946 0.88956 0.88538 0.94207 0.85674 0.92446 0.85767 0.87389 0.93738 0.86108 0.87502 0.89484 0.90023 0.97514 0.98156 1.03319 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.83 10.47 -51.50 -0.54 -8.37 16 3 C 0.47 13.04 7.26 71.24 0.52 13.56 16 4 O -0.54 -18.97 15.67 21.97 0.34 -18.63 16 5 C -0.09 -2.26 3.04 -11.54 -0.04 -2.29 16 6 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 7 C -0.14 -2.09 8.51 71.98 0.61 -1.48 16 8 C 0.14 4.85 4.71 86.38 0.41 5.26 16 9 N -0.61 -20.90 2.56 -818.11 -2.10 -22.99 16 10 C 0.09 2.32 6.79 86.87 0.59 2.91 16 11 C -0.10 -2.25 6.42 31.46 0.20 -2.04 16 12 C 0.05 1.79 1.00 3.28 0.00 1.79 16 13 C -0.12 -3.36 6.06 31.59 0.19 -3.17 16 14 C -0.11 -2.86 7.08 32.06 0.23 -2.64 16 15 C 0.04 1.71 6.18 86.75 0.54 2.24 16 16 N -0.50 -21.58 4.79 -846.31 -4.05 -25.63 16 17 C 0.21 12.17 3.47 85.56 0.30 12.47 16 18 C -0.53 -31.52 8.81 25.60 0.23 -31.30 16 19 H 0.07 3.97 7.78 -2.91 -0.02 3.95 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.94 -61.67 13.29 21.45 0.28 -61.39 16 22 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.51 21.60 4.45 87.62 0.39 21.99 16 27 O -0.58 -31.07 16.04 -3.03 -0.05 -31.12 16 28 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.00 8.13 -2.38 -0.02 0.98 16 30 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 31 H 0.09 1.07 8.11 -2.38 -0.02 1.05 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.17 5.65 -2.39 -0.01 1.15 16 34 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.04 1.74 7.74 -2.39 -0.02 1.72 16 36 H 0.13 1.82 5.89 -2.39 -0.01 1.81 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.12 1.67 7.45 -2.39 -0.02 1.66 16 39 H 0.11 2.35 8.07 -2.39 -0.02 2.33 16 40 H 0.04 1.53 7.52 -2.39 -0.02 1.52 16 41 H 0.12 2.26 7.39 -2.39 -0.02 2.24 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.01 0.30 7.62 -2.39 -0.02 0.28 16 46 H 0.00 0.03 6.78 -2.39 -0.02 0.02 16 47 H -0.05 -3.47 6.89 -2.39 -0.02 -3.49 16 48 H 0.26 16.27 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -89.85 380.08 2.69 -87.16 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.94 Total: 13.32 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.82 Total: 19.18 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -5.86 Total: -110.01 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.24 Total: -58.12 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -89.85 2.69 -87.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.499 kcal (2) G-P(sol) polarization free energy of solvation -89.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds