Wall clock time and date at job start Fri Apr 10 2020 18:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42906 * 113.99840 * 2 1 4 4 C 1.53001 * 109.47280 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47381 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47430 * 179.97438 * 5 4 3 7 7 C 1.33960 * 122.78204 * 89.97629 * 6 5 4 8 8 O 1.21230 * 125.41285 * 0.02562 * 7 6 5 9 9 C 1.51454 * 109.17481 * 180.02562 * 7 6 5 10 10 C 1.53734 * 103.50379 * 359.91861 * 9 7 6 11 11 C 1.52525 * 110.31187 * 118.75927 * 10 9 7 12 12 C 1.53226 * 109.19944 * 178.69122 * 11 10 9 13 13 C 1.53043 * 109.20110 * 303.24261 * 12 11 10 14 14 N 1.46847 * 109.63661 * 59.63044 * 13 12 11 15 15 C 1.46901 * 110.99840 * 173.77504 * 14 13 12 16 16 C 1.50702 * 109.47163 * 59.21484 * 15 14 13 17 17 H 1.07993 * 120.00122 * 5.00760 * 16 15 14 18 18 C 1.37882 * 120.00089 * 185.00815 * 16 15 14 19 19 N 1.31516 * 119.99749 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47193 * 59.99788 * 20 18 16 22 22 H 1.48496 * 109.47387 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47030 * 300.00026 * 20 18 16 24 24 C 1.46953 * 111.13823 * 297.82445 * 14 13 12 25 25 C 1.34041 * 122.78857 * 270.01893 * 6 5 4 26 26 O 1.21233 * 125.50149 * 359.96781 * 25 6 5 27 27 H 1.09003 * 109.47311 * 299.99870 * 1 2 3 28 28 H 1.08999 * 109.47537 * 60.00611 * 1 2 3 29 29 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47175 * 59.99864 * 3 2 1 31 31 H 1.09006 * 109.46694 * 299.99981 * 3 2 1 32 32 H 1.09003 * 109.47387 * 59.99477 * 4 3 2 33 33 H 1.08998 * 109.46808 * 299.99725 * 4 3 2 34 34 H 1.09003 * 109.46889 * 59.99659 * 5 4 3 35 35 H 1.08998 * 109.47324 * 299.99897 * 5 4 3 36 36 H 1.09003 * 110.64019 * 118.46798 * 9 7 6 37 37 H 1.08997 * 110.64026 * 241.36679 * 9 7 6 38 38 H 1.09005 * 109.51462 * 298.60776 * 11 10 9 39 39 H 1.09003 * 109.51986 * 58.77229 * 11 10 9 40 40 H 1.09002 * 109.51844 * 183.32336 * 12 11 10 41 41 H 1.09002 * 109.51270 * 63.15422 * 12 11 10 42 42 H 1.08998 * 109.43985 * 299.57798 * 13 12 11 43 43 H 1.09000 * 109.41569 * 179.66791 * 13 12 11 44 44 H 1.09000 * 109.47386 * 179.21647 * 15 14 13 45 45 H 1.09006 * 109.46852 * 299.22088 * 15 14 13 46 46 H 0.96997 * 120.00360 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.45743 * 300.73882 * 24 14 13 48 48 H 1.09008 * 109.43322 * 180.80031 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 -0.0013 6 7 5.6180 2.4669 -0.0013 7 6 6.3410 2.4087 -1.1275 8 8 5.8921 2.4437 -2.2531 9 6 7.8084 2.2923 -0.7712 10 6 7.8059 2.2955 0.7661 11 6 8.3913 0.9919 1.2993 12 6 8.4068 1.0357 2.8309 13 6 9.1990 2.2615 3.2913 14 7 8.5723 3.4806 2.7645 15 6 9.2197 4.6822 3.3075 16 6 10.6815 4.6744 2.9411 17 1 11.0721 3.9018 2.2955 18 6 11.5201 5.6535 3.4300 19 7 11.0444 6.5940 4.2167 20 14 13.3318 5.6442 2.9752 21 1 13.4727 5.7546 1.5011 22 1 14.0113 6.7934 3.6253 23 1 13.9519 4.3767 3.4382 24 6 8.5883 3.4922 1.2951 25 6 6.3417 2.4098 1.1256 26 8 5.8947 2.4458 2.2519 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6884 1.8464 -0.8901 32 1 3.8567 0.6440 -0.8908 33 1 3.8573 0.6438 0.8891 34 1 3.8363 3.1236 0.8887 35 1 3.8357 3.1232 -0.8913 36 1 8.2236 1.3594 -1.1529 37 1 8.3663 3.1457 -1.1564 38 1 7.7790 0.1543 0.9652 39 1 9.4090 0.8709 0.9282 40 1 8.8781 0.1317 3.2163 41 1 7.3846 1.1018 3.2036 42 1 10.2224 2.1914 2.9230 43 1 9.2072 2.2994 4.3807 44 1 8.7453 5.5706 2.8904 45 1 9.1173 4.6912 4.3927 46 1 11.6342 7.2831 4.5604 47 1 9.6183 3.4370 0.9428 48 1 8.1304 4.4134 0.9347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:34 Heat of formation + Delta-G solvation = -112.238678 kcal Electronic energy + Delta-G solvation = -28903.753940 eV Core-core repulsion = 24958.773745 eV Total energy + Delta-G solvation = -3944.980195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.12472 -38.86532 -38.28861 -37.65803 -35.78833 -34.80917 -33.18949 -31.95720 -31.29992 -28.04494 -27.18462 -26.76070 -25.51675 -24.15322 -23.91029 -22.27459 -21.89673 -21.04490 -20.24497 -18.42467 -17.34323 -16.71319 -16.57786 -16.45346 -16.13737 -15.98718 -15.26804 -15.09561 -14.65138 -14.46038 -14.37606 -14.31874 -13.99943 -13.72660 -13.56987 -13.28983 -12.66453 -12.55089 -12.54247 -12.33583 -12.18530 -11.94300 -11.89155 -11.75044 -11.43641 -11.21404 -11.08586 -11.01598 -10.66294 -10.48796 -10.40594 -10.24749 -10.00701 -9.99118 -9.83349 -9.73270 -9.54190 -9.50866 -8.46772 -7.17636 -6.05680 -4.16202 1.66057 2.48326 2.81354 3.25001 3.31105 3.32103 3.48646 4.10443 4.26474 4.36583 4.45724 4.62867 4.72242 4.73892 4.89875 4.97208 5.02313 5.04165 5.10015 5.14852 5.24187 5.29048 5.31640 5.34563 5.36782 5.41570 5.51494 5.64920 5.72539 5.75924 5.86268 5.91735 6.11062 6.16803 6.23047 6.36479 6.38480 6.69868 6.82074 6.85086 6.91372 7.24167 7.41665 7.49119 7.86544 7.96672 8.01172 8.24199 8.25600 8.94149 9.50936 10.98825 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002903 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.237049 B = 9642.168211 C = 9926.566563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.103 3.897 6 N -0.577 5.577 7 C 0.532 3.468 8 O -0.494 6.494 9 C -0.153 4.153 10 C -0.090 4.090 11 C -0.096 4.096 12 C -0.126 4.126 13 C 0.068 3.932 14 N -0.532 5.532 15 C 0.189 3.811 16 C -0.552 4.552 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.084 3.916 25 C 0.540 3.460 26 O -0.442 6.442 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.067 0.933 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.263 0.737 47 H 0.057 0.943 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 -11.706 -9.492 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.172 4.172 5 C -0.019 4.019 6 N -0.321 5.321 7 C 0.322 3.678 8 O -0.367 6.367 9 C -0.193 4.193 10 C -0.094 4.094 11 C -0.134 4.134 12 C -0.164 4.164 13 C -0.061 4.061 14 N -0.255 5.255 15 C 0.064 3.936 16 C -0.591 4.591 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.046 4.046 25 C 0.328 3.672 26 O -0.309 6.309 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.996 -11.636 -9.158 21.075 hybrid contribution 1.654 0.442 -0.513 1.788 sum -13.341 -11.194 -9.671 19.920 Atomic orbital electron populations 1.22746 0.80859 1.02812 1.00060 1.87873 1.19842 1.27915 1.95454 1.22382 0.93248 0.84867 1.00593 1.21801 0.93753 0.97377 1.04248 1.21535 0.78062 0.97482 1.04801 1.46912 1.08853 1.66541 1.09803 1.20904 0.90091 0.73251 0.83600 1.90738 1.77885 1.46757 1.21332 1.22633 0.93683 1.07098 0.95914 1.21328 0.93282 1.00834 0.93933 1.21430 1.00956 0.93268 0.97707 1.21784 1.02670 0.98175 0.93782 1.21813 0.95501 0.89034 0.99749 1.62471 1.55116 1.03946 1.03991 1.19735 0.91453 0.86296 0.96107 1.21704 0.95024 1.11623 1.30783 0.92517 1.24967 0.98566 0.95394 0.94800 1.69931 1.35740 1.14277 1.32791 0.86713 0.85376 0.77584 0.78668 1.20270 1.21236 1.20259 1.21701 0.97941 0.93456 0.91483 1.20652 0.88920 0.74058 0.83572 1.90736 1.76808 1.42783 1.20575 0.93940 0.94030 0.89594 0.92747 0.92935 0.90552 0.90300 0.88605 0.88954 0.86272 0.85898 0.92108 0.90408 0.92045 0.90264 0.94335 0.91449 0.95595 0.94484 0.92703 0.92453 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.18 10.70 -35.23 -0.38 -4.56 16 3 C 0.07 0.61 5.94 37.16 0.22 0.83 16 4 C -0.13 -1.40 5.91 -26.73 -0.16 -1.56 16 5 C 0.10 1.13 5.56 -4.05 -0.02 1.11 16 6 N -0.58 -7.49 2.56 -115.27 -0.30 -7.78 16 7 C 0.53 6.85 8.09 -10.98 -0.09 6.76 16 8 O -0.49 -7.41 17.48 5.60 0.10 -7.31 16 9 C -0.15 -1.69 6.29 -27.13 -0.17 -1.86 16 10 C -0.09 -1.24 0.69 -155.56 -0.11 -1.35 16 11 C -0.10 -1.21 4.60 -26.86 -0.12 -1.34 16 12 C -0.13 -1.88 5.82 -26.59 -0.15 -2.04 16 13 C 0.07 1.26 5.00 -3.83 -0.02 1.24 16 14 N -0.53 -10.93 4.25 -236.39 -1.01 -11.94 16 15 C 0.19 4.73 5.12 -4.97 -0.03 4.71 16 16 C -0.55 -14.45 7.71 -34.44 -0.27 -14.72 16 17 H 0.06 1.44 5.85 -52.49 -0.31 1.13 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 20 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.08 1.46 3.68 -4.08 -0.02 1.44 16 25 C 0.54 8.08 6.54 -11.07 -0.07 8.01 16 26 O -0.44 -7.88 15.06 5.60 0.08 -7.79 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 36 H 0.12 1.04 7.72 -51.93 -0.40 0.64 16 37 H 0.12 1.26 7.72 -51.93 -0.40 0.86 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.30 6.27 -51.93 -0.33 0.98 16 42 H 0.04 0.75 6.73 -51.93 -0.35 0.40 16 43 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 44 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.06 1.03 6.83 -51.93 -0.35 0.68 16 48 H 0.07 1.23 8.09 -51.92 -0.42 0.80 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -31.65 380.60 -8.03 -39.68 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.00 Total: -1.14 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.01 Total: 4.27 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.56 Total: -44.62 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.19 Total: -19.66 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.65 -8.03 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.556 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds