Wall clock time and date at job start Fri Apr 10 2020 18:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53000 * 109.47396 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47509 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47174 * 179.97438 * 5 4 3 7 7 C 1.33958 * 122.78396 * 269.97881 * 6 5 4 8 8 O 1.21227 * 125.41735 * 359.97438 * 7 6 5 9 9 C 1.51455 * 109.17217 * 180.02562 * 7 6 5 10 10 C 1.53739 * 103.36521 * 359.97438 * 9 7 6 11 11 C 1.52536 * 110.30545 * 241.32725 * 10 9 7 12 12 C 1.53229 * 109.20348 * 181.33306 * 11 10 9 13 13 C 1.53044 * 109.19587 * 56.76146 * 12 11 10 14 14 N 1.46842 * 109.63352 * 300.35522 * 13 12 11 15 15 C 1.46904 * 110.99891 * 186.23737 * 14 13 12 16 16 C 1.50701 * 109.47195 * 66.04853 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27796 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.46954 * 111.14357 * 62.18168 * 14 13 12 25 25 C 1.34048 * 122.78649 * 89.99583 * 6 5 4 26 26 O 1.21235 * 125.49707 * 359.94735 * 25 6 5 27 27 H 1.09002 * 109.47157 * 299.99632 * 1 2 3 28 28 H 1.09003 * 109.47089 * 59.99854 * 1 2 3 29 29 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47432 * 60.00215 * 3 2 1 31 31 H 1.09000 * 109.47590 * 299.99894 * 3 2 1 32 32 H 1.09005 * 109.47267 * 59.99406 * 4 3 2 33 33 H 1.09006 * 109.47067 * 300.00094 * 4 3 2 34 34 H 1.08993 * 109.47213 * 59.99515 * 5 4 3 35 35 H 1.09002 * 109.46806 * 299.99468 * 5 4 3 36 36 H 1.08997 * 110.64257 * 241.52858 * 9 7 6 37 37 H 1.08995 * 110.64498 * 118.46609 * 9 7 6 38 38 H 1.08997 * 109.51622 * 61.41287 * 11 10 9 39 39 H 1.08996 * 109.51053 * 301.25343 * 11 10 9 40 40 H 1.08998 * 109.51455 * 296.84510 * 12 11 10 41 41 H 1.09003 * 109.51415 * 176.67853 * 12 11 10 42 42 H 1.09000 * 109.43947 * 180.30167 * 13 12 11 43 43 H 1.09004 * 109.41975 * 60.38848 * 13 12 11 44 44 H 1.09000 * 109.47038 * 306.03996 * 15 14 13 45 45 H 1.09007 * 109.46566 * 186.04529 * 15 14 13 46 46 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 47 47 H 1.08994 * 109.45106 * 59.26573 * 24 14 13 48 48 H 1.08991 * 109.45512 * 179.19749 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 7 5.6181 2.4669 0.0000 7 6 6.3412 2.4095 1.1262 8 8 5.8925 2.4454 2.2518 9 6 7.8087 2.2940 0.7698 10 6 7.8021 2.2943 -0.7676 11 6 8.3856 0.9893 -1.2997 12 6 8.3977 1.0302 -2.8314 13 6 9.1896 2.2547 -3.2959 14 7 8.5645 3.4750 -2.7702 15 6 9.2113 4.6754 -3.3171 16 6 8.9558 4.7521 -4.8003 17 1 8.3718 3.9856 -5.2880 18 6 9.4729 5.7974 -5.5356 19 7 9.2546 5.8615 -6.8310 20 14 10.4835 7.1228 -4.6922 21 1 11.9166 6.7338 -4.7016 22 1 10.3150 8.4091 -5.4151 23 1 10.0223 7.2793 -3.2893 24 6 8.5836 3.4897 -1.3009 25 6 6.3418 2.4100 -1.1269 26 8 5.8946 2.4449 -2.2532 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8568 0.6439 -0.8908 33 1 3.8575 0.6437 0.8892 34 1 3.8364 3.1229 0.8903 35 1 3.8358 3.1239 -0.8896 36 1 8.2246 1.3617 1.1516 37 1 8.3655 3.1494 1.1521 38 1 7.7737 0.1527 -0.9626 39 1 9.4040 0.8687 -0.9306 40 1 7.3748 1.0961 -3.2020 41 1 8.8678 0.1251 -3.2161 42 1 9.1962 2.2906 -4.3853 43 1 10.2137 2.1846 -2.9290 44 1 10.2848 4.6244 -3.1353 45 1 8.8022 5.5615 -2.8316 46 1 9.6181 6.5971 -7.3483 47 1 9.6143 3.4349 -0.9507 48 1 8.1269 4.4116 -0.9411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:38 Heat of formation + Delta-G solvation = -105.101429 kcal Electronic energy + Delta-G solvation = -28871.451562 eV Core-core repulsion = 24926.780861 eV Total energy + Delta-G solvation = -3944.670701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22519 -38.96031 -38.28490 -37.72763 -35.84146 -34.87911 -33.15049 -32.04440 -31.44254 -28.37711 -27.56599 -27.04820 -25.54548 -24.20736 -23.71784 -22.29275 -21.98528 -20.86094 -20.30756 -18.50008 -17.37280 -16.89280 -16.64168 -16.56127 -16.19757 -16.06222 -15.30595 -15.18067 -14.72588 -14.58412 -14.35717 -14.33860 -13.99273 -13.76026 -13.71571 -13.47543 -12.95206 -12.60548 -12.55654 -12.41649 -12.23195 -12.20935 -12.03287 -11.94271 -11.57864 -11.43015 -11.21256 -10.86687 -10.77675 -10.66666 -10.58089 -10.13952 -9.97558 -9.89805 -9.82808 -9.76598 -9.61733 -9.24119 -8.57439 -7.38533 -6.04377 -4.01555 1.59490 2.43066 2.75459 3.26674 3.34899 3.35638 3.48921 3.98047 4.13466 4.32768 4.41281 4.56503 4.61701 4.74259 4.80923 4.88979 4.98768 5.05049 5.08266 5.10462 5.15551 5.21924 5.27782 5.29334 5.29956 5.36167 5.45147 5.49600 5.58775 5.69756 5.73419 5.83657 5.89460 5.91049 6.01855 6.11991 6.14057 6.65216 6.68855 6.81449 6.83471 6.86094 6.97830 7.35339 7.58169 7.86535 7.92807 8.02141 8.65678 9.06375 9.56876 11.08816 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003194 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.612094 B = 8764.599144 C = 9381.157966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.103 3.897 6 N -0.577 5.577 7 C 0.531 3.469 8 O -0.494 6.494 9 C -0.152 4.152 10 C -0.089 4.089 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.066 3.934 14 N -0.517 5.517 15 C 0.164 3.836 16 C -0.506 4.506 17 H 0.083 0.917 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.874 3.126 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.072 3.928 25 C 0.537 3.463 26 O -0.430 6.430 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.020 0.980 44 H -0.016 1.016 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.042 0.958 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 -10.582 17.241 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.172 4.172 5 C -0.019 4.019 6 N -0.321 5.321 7 C 0.321 3.679 8 O -0.367 6.367 9 C -0.192 4.192 10 C -0.093 4.093 11 C -0.135 4.135 12 C -0.164 4.164 13 C -0.062 4.062 14 N -0.241 5.241 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.101 0.899 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.057 4.057 25 C 0.324 3.676 26 O -0.295 6.295 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.038 0.962 44 H 0.002 0.998 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.640 -10.569 16.847 22.101 hybrid contribution 1.105 1.136 0.654 1.714 sum -8.535 -9.433 17.501 21.636 Atomic orbital electron populations 1.22750 0.80839 1.02814 1.00074 1.87871 1.19856 1.27880 1.95457 1.22377 0.93207 0.84903 1.00625 1.21798 0.93819 0.97306 1.04241 1.21552 0.77868 0.97577 1.04887 1.46910 1.08971 1.66516 1.09696 1.20848 0.90014 0.73420 0.83666 1.90743 1.77861 1.46761 1.21317 1.22624 0.93973 1.06988 0.95627 1.21168 0.93753 1.00329 0.94003 1.21466 1.00856 0.93281 0.97889 1.21776 1.03212 0.97975 0.93421 1.21965 0.93619 0.88625 1.02012 1.61890 1.56432 1.03424 1.02363 1.20165 0.91278 0.87665 0.97051 1.21020 1.33071 1.10351 0.89984 0.89920 1.24899 0.96106 0.97645 0.94707 1.69895 1.45903 1.32212 1.05884 0.86883 0.80883 0.81968 0.80088 1.20377 1.21188 1.19285 1.21871 0.97343 0.94762 0.91767 1.20455 0.88755 0.74716 0.83724 1.90805 1.76559 1.41820 1.20361 0.94054 0.93894 0.89590 0.92961 0.92680 0.90235 0.90598 0.88954 0.88457 0.86161 0.86127 0.91774 0.90526 0.89724 0.91694 0.88968 0.96223 0.99799 0.95510 0.92690 0.93968 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.25 10.70 -35.23 -0.38 -4.63 16 3 C 0.07 0.62 5.94 37.16 0.22 0.84 16 4 C -0.13 -1.41 5.91 -26.73 -0.16 -1.57 16 5 C 0.10 1.13 5.56 -4.04 -0.02 1.10 16 6 N -0.58 -7.24 2.56 -115.41 -0.30 -7.54 16 7 C 0.53 6.38 8.09 -10.98 -0.09 6.29 16 8 O -0.49 -7.01 17.48 5.60 0.10 -6.91 16 9 C -0.15 -1.45 6.30 -27.13 -0.17 -1.62 16 10 C -0.09 -1.12 0.69 -155.73 -0.11 -1.23 16 11 C -0.10 -1.12 4.60 -26.85 -0.12 -1.25 16 12 C -0.13 -1.85 5.81 -26.59 -0.15 -2.00 16 13 C 0.07 1.20 5.28 -3.83 -0.02 1.18 16 14 N -0.52 -10.36 4.02 -236.40 -0.95 -11.31 16 15 C 0.16 3.88 3.79 -4.97 -0.02 3.86 16 16 C -0.51 -14.24 8.98 -34.44 -0.31 -14.55 16 17 H 0.08 2.56 7.38 -52.49 -0.39 2.18 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.87 21.26 27.46 -169.99 -4.67 16.59 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.23 6.55 56.52 0.37 -5.86 16 24 C 0.07 1.10 3.99 -4.08 -0.02 1.09 16 25 C 0.54 7.88 6.52 -11.25 -0.07 7.81 16 26 O -0.43 -7.90 15.02 5.60 0.08 -7.82 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.91 7.83 -51.93 -0.41 0.51 16 35 H 0.10 1.08 7.84 -51.93 -0.41 0.68 16 36 H 0.12 0.87 7.72 -51.93 -0.40 0.47 16 37 H 0.12 0.98 7.72 -51.93 -0.40 0.58 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.44 6.26 -51.93 -0.33 1.11 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.95 6.71 -51.93 -0.35 1.60 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H -0.02 -0.36 7.54 -51.93 -0.39 -0.75 16 45 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -34.01 380.01 -7.73 -41.74 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.09 Total: -2.26 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.03 Total: 3.16 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.47 Total: -45.59 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.20 Total: -19.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.01 -7.73 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.363 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds