Wall clock time and date at job start Fri Apr 10 2020 18:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53000 * 109.47396 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47509 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47174 * 179.97438 * 5 4 3 7 7 C 1.33958 * 122.78396 * 269.97881 * 6 5 4 8 8 O 1.21227 * 125.41735 * 359.97438 * 7 6 5 9 9 C 1.51455 * 109.17217 * 180.02562 * 7 6 5 10 10 C 1.53739 * 103.36521 * 359.97438 * 9 7 6 11 11 C 1.52536 * 110.30545 * 241.32725 * 10 9 7 12 12 C 1.53229 * 109.20348 * 181.33306 * 11 10 9 13 13 C 1.53044 * 109.19587 * 56.76146 * 12 11 10 14 14 N 1.46842 * 109.63352 * 300.35522 * 13 12 11 15 15 C 1.46904 * 110.99891 * 186.23737 * 14 13 12 16 16 C 1.50701 * 109.47195 * 66.04853 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27796 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.46954 * 111.14357 * 62.18168 * 14 13 12 25 25 C 1.34048 * 122.78649 * 89.99583 * 6 5 4 26 26 O 1.21235 * 125.49707 * 359.94735 * 25 6 5 27 27 H 1.09002 * 109.47157 * 299.99632 * 1 2 3 28 28 H 1.09003 * 109.47089 * 59.99854 * 1 2 3 29 29 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47432 * 60.00215 * 3 2 1 31 31 H 1.09000 * 109.47590 * 299.99894 * 3 2 1 32 32 H 1.09005 * 109.47267 * 59.99406 * 4 3 2 33 33 H 1.09006 * 109.47067 * 300.00094 * 4 3 2 34 34 H 1.08993 * 109.47213 * 59.99515 * 5 4 3 35 35 H 1.09002 * 109.46806 * 299.99468 * 5 4 3 36 36 H 1.08997 * 110.64257 * 241.52858 * 9 7 6 37 37 H 1.08995 * 110.64498 * 118.46609 * 9 7 6 38 38 H 1.08997 * 109.51622 * 61.41287 * 11 10 9 39 39 H 1.08996 * 109.51053 * 301.25343 * 11 10 9 40 40 H 1.08998 * 109.51455 * 296.84510 * 12 11 10 41 41 H 1.09003 * 109.51415 * 176.67853 * 12 11 10 42 42 H 1.09000 * 109.43947 * 180.30167 * 13 12 11 43 43 H 1.09004 * 109.41975 * 60.38848 * 13 12 11 44 44 H 1.09000 * 109.47038 * 306.03996 * 15 14 13 45 45 H 1.09007 * 109.46566 * 186.04529 * 15 14 13 46 46 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 47 47 H 1.08994 * 109.45106 * 59.26573 * 24 14 13 48 48 H 1.08991 * 109.45512 * 179.19749 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 7 5.6181 2.4669 0.0000 7 6 6.3412 2.4095 1.1262 8 8 5.8925 2.4454 2.2518 9 6 7.8087 2.2940 0.7698 10 6 7.8021 2.2943 -0.7676 11 6 8.3856 0.9893 -1.2997 12 6 8.3977 1.0302 -2.8314 13 6 9.1896 2.2547 -3.2959 14 7 8.5645 3.4750 -2.7702 15 6 9.2113 4.6754 -3.3171 16 6 8.9558 4.7521 -4.8003 17 1 8.3718 3.9856 -5.2880 18 6 9.4729 5.7974 -5.5356 19 7 9.2546 5.8615 -6.8310 20 14 10.4835 7.1228 -4.6922 21 1 11.9166 6.7338 -4.7016 22 1 10.3150 8.4091 -5.4151 23 1 10.0223 7.2793 -3.2893 24 6 8.5836 3.4897 -1.3009 25 6 6.3418 2.4100 -1.1269 26 8 5.8946 2.4449 -2.2532 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8568 0.6439 -0.8908 33 1 3.8575 0.6437 0.8892 34 1 3.8364 3.1229 0.8903 35 1 3.8358 3.1239 -0.8896 36 1 8.2246 1.3617 1.1516 37 1 8.3655 3.1494 1.1521 38 1 7.7737 0.1527 -0.9626 39 1 9.4040 0.8687 -0.9306 40 1 7.3748 1.0961 -3.2020 41 1 8.8678 0.1251 -3.2161 42 1 9.1962 2.2906 -4.3853 43 1 10.2137 2.1846 -2.9290 44 1 10.2848 4.6244 -3.1353 45 1 8.8022 5.5615 -2.8316 46 1 9.6181 6.5971 -7.3483 47 1 9.6143 3.4349 -0.9507 48 1 8.1269 4.4116 -0.9411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:37 Heat of formation + Delta-G solvation = -129.843609 kcal Electronic energy + Delta-G solvation = -28872.524463 eV Core-core repulsion = 24926.780861 eV Total energy + Delta-G solvation = -3945.743603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.25041 -40.09410 -39.14683 -38.87149 -36.94784 -36.12341 -34.70562 -33.66389 -32.50307 -29.89911 -28.78062 -27.88997 -26.35843 -25.54048 -25.00240 -23.33406 -23.14080 -22.19196 -21.58557 -19.60386 -18.92718 -18.32809 -17.62370 -17.47430 -17.09460 -17.02706 -16.64991 -16.18802 -16.09510 -15.84330 -15.66908 -15.18842 -15.15706 -14.97295 -14.91988 -14.69399 -14.52662 -13.93501 -13.58052 -13.49779 -13.43833 -13.24547 -13.17998 -12.89237 -12.85473 -12.55828 -12.49327 -12.15852 -12.07365 -11.97300 -11.79622 -11.73545 -11.43410 -11.25858 -11.09861 -10.81839 -10.77097 -10.71446 -10.68773 -8.89013 -8.26104 -6.29468 0.57598 1.34736 1.37720 1.48130 1.49029 1.73935 2.35768 2.76817 2.96813 3.07502 3.16988 3.32291 3.52544 3.66833 3.76613 3.94281 4.03087 4.07173 4.20672 4.24462 4.31964 4.35109 4.41513 4.48149 4.49810 4.51321 4.58816 4.60996 4.64762 4.72480 4.75689 4.82539 4.86910 4.88546 4.89966 5.00994 5.02699 5.03607 5.12560 5.32762 5.50891 5.57694 5.84132 6.02820 6.15410 6.37503 6.45441 6.71006 6.78061 6.86874 7.33818 8.91189 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003194 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.612094 B = 8764.599144 C = 9381.157966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.066 3.934 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.578 5.578 7 C 0.532 3.468 8 O -0.514 6.514 9 C -0.135 4.135 10 C -0.085 4.085 11 C -0.091 4.091 12 C -0.120 4.120 13 C 0.069 3.931 14 N -0.543 5.543 15 C 0.175 3.825 16 C -0.513 4.513 17 H 0.030 0.970 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.952 3.048 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.246 1.246 24 C 0.069 3.931 25 C 0.533 3.467 26 O -0.480 6.480 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.038 0.962 44 H -0.006 1.006 45 H 0.026 0.974 46 H 0.266 0.734 47 H 0.072 0.928 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -10.746 21.170 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.322 5.322 7 C 0.324 3.676 8 O -0.388 6.388 9 C -0.174 4.174 10 C -0.089 4.089 11 C -0.129 4.129 12 C -0.158 4.158 13 C -0.059 4.059 14 N -0.267 5.267 15 C 0.048 3.952 16 C -0.551 4.551 17 H 0.048 0.952 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.775 3.225 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.169 1.169 24 C -0.060 4.060 25 C 0.322 3.678 26 O -0.349 6.349 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.012 0.988 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.178 -10.759 20.825 24.826 hybrid contribution 0.513 1.104 -0.636 1.373 sum -7.665 -9.655 20.190 23.656 Atomic orbital electron populations 1.22945 0.79188 1.03930 1.01003 1.87824 1.21776 1.28578 1.95661 1.22400 0.92276 0.84797 1.01605 1.21665 0.94845 0.96635 1.02970 1.21638 0.77546 0.97914 1.05110 1.47008 1.09543 1.65978 1.09629 1.21281 0.91021 0.72429 0.82915 1.90747 1.78446 1.47730 1.21911 1.22700 0.92194 1.10002 0.92485 1.21181 0.91555 0.99768 0.96373 1.21521 1.03239 0.93323 0.94800 1.21683 1.00772 0.96937 0.96423 1.21883 0.95219 0.89595 0.99237 1.61705 1.56704 1.02550 1.05782 1.19881 0.91936 0.89543 0.93817 1.21273 1.31965 1.08996 0.92873 0.95166 1.25923 0.97603 1.00554 0.95301 1.70078 1.47802 1.33504 1.07986 0.85656 0.79267 0.77923 0.79696 1.18900 1.21105 1.16927 1.21999 0.99464 0.96128 0.88377 1.20937 0.90076 0.73464 0.83331 1.90796 1.77605 1.44172 1.22361 0.92730 0.93332 0.88493 0.91266 0.92360 0.92192 0.90956 0.87595 0.89281 0.82494 0.83667 0.89657 0.87071 0.92954 0.89608 0.93901 0.94433 0.98790 0.95562 0.92553 0.91014 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.89 10.70 -148.98 -1.59 -10.48 16 3 C 0.07 1.22 5.94 71.98 0.43 1.64 16 4 C -0.12 -2.58 5.91 30.59 0.18 -2.40 16 5 C 0.10 2.14 5.56 86.38 0.48 2.62 16 6 N -0.58 -13.79 2.56 -756.74 -1.94 -15.73 16 7 C 0.53 11.18 8.09 88.03 0.71 11.89 16 8 O -0.51 -13.12 17.48 -2.87 -0.05 -13.17 16 9 C -0.13 -1.90 6.30 30.34 0.19 -1.71 16 10 C -0.08 -1.88 0.69 -52.98 -0.04 -1.92 16 11 C -0.09 -1.77 4.60 30.52 0.14 -1.63 16 12 C -0.12 -3.44 5.81 30.69 0.18 -3.26 16 13 C 0.07 2.52 5.28 86.33 0.46 2.97 16 14 N -0.54 -21.71 4.02 -901.83 -3.62 -25.33 16 15 C 0.18 8.24 3.79 85.56 0.32 8.56 16 16 C -0.51 -30.19 8.98 25.60 0.23 -29.96 16 17 H 0.03 2.03 7.38 -2.91 -0.02 2.01 16 18 C 0.00 0.16 5.47 84.65 0.46 0.62 16 19 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 20 Si 0.95 43.87 27.46 68.60 1.88 45.75 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.25 -10.36 6.55 99.48 0.65 -9.71 16 24 C 0.07 1.92 3.99 86.11 0.34 2.26 16 25 C 0.53 15.30 6.52 87.81 0.57 15.87 16 26 O -0.48 -18.42 15.02 -2.89 -0.04 -18.46 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.11 1.98 7.83 -2.39 -0.02 1.97 16 35 H 0.09 2.06 7.84 -2.39 -0.02 2.04 16 36 H 0.16 1.20 7.72 -2.39 -0.02 1.18 16 37 H 0.15 1.48 7.72 -2.39 -0.02 1.47 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.85 6.26 -2.39 -0.01 1.84 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.95 6.71 -2.39 -0.02 1.94 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H -0.01 -0.25 7.54 -2.39 -0.02 -0.26 16 45 H 0.03 1.23 7.06 -2.38 -0.02 1.22 16 46 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -80.12 380.01 1.73 -78.39 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.88 Total: 12.37 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.91 Total: 7.16 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.26 Total: -101.56 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.69 Total: -42.12 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -80.12 1.73 -78.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.453 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds