Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46826 * 2 1 4 4 C 1.34232 * 116.99388 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00079 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99484 * 179.97438 * 4 3 2 7 7 H 1.09000 * 110.88247 * 331.02201 * 6 4 3 8 8 C 1.54747 * 111.18481 * 207.15933 * 6 4 3 9 9 N 1.46819 * 105.41806 * 267.14812 * 8 6 4 10 10 C 1.46494 * 124.36315 * 163.00133 * 9 8 6 11 11 C 1.34574 * 111.27276 * 342.74052 * 9 8 6 12 12 O 1.21284 * 125.02481 * 180.93292 * 11 9 8 13 13 C 1.50781 * 109.94378 * 0.92541 * 11 9 8 14 14 C 1.52533 * 110.65774 * 257.20613 * 13 11 9 15 15 C 1.53140 * 109.32589 * 293.37761 * 14 13 11 16 16 N 1.46846 * 109.46470 * 301.74100 * 15 14 13 17 17 C 1.46901 * 111.00326 * 186.33901 * 16 15 14 18 18 C 1.50705 * 109.46799 * 65.66052 * 17 16 15 19 19 H 1.07988 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99472 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00172 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99931 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47022 * 90.00406 * 22 20 18 24 24 H 1.48495 * 109.47567 * 210.00475 * 22 20 18 25 25 H 1.48500 * 109.47238 * 330.00448 * 22 20 18 26 26 C 1.46856 * 111.29559 * 62.16695 * 16 15 14 27 27 C 1.52536 * 110.65162 * 134.38785 * 13 11 9 28 28 H 1.09001 * 109.47213 * 59.99580 * 1 2 3 29 29 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46972 * 300.00138 * 1 2 3 31 31 H 1.08995 * 109.46734 * 240.00158 * 2 1 3 32 32 H 1.08997 * 109.46918 * 120.00018 * 2 1 3 33 33 H 1.08997 * 110.37500 * 148.11534 * 8 6 4 34 34 H 1.09005 * 110.18121 * 26.07701 * 8 6 4 35 35 H 1.09007 * 109.47470 * 179.72076 * 10 9 8 36 36 H 1.09004 * 109.47071 * 59.72396 * 10 9 8 37 37 H 1.09001 * 109.47702 * 299.72381 * 10 9 8 38 38 H 1.09003 * 109.49627 * 53.33390 * 14 13 11 39 39 H 1.09005 * 109.49315 * 173.42232 * 14 13 11 40 40 H 1.09005 * 109.47030 * 181.73983 * 15 14 13 41 41 H 1.09000 * 109.47102 * 61.73996 * 15 14 13 42 42 H 1.08998 * 109.46907 * 185.65903 * 17 16 15 43 43 H 1.08995 * 109.47175 * 305.65870 * 17 16 15 44 44 H 0.97006 * 119.99977 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47152 * 177.83192 * 26 16 15 46 46 H 1.08994 * 109.47302 * 57.82509 * 26 16 15 47 47 H 1.09000 * 109.49369 * 186.57360 * 27 13 11 48 48 H 1.08999 * 109.50350 * 306.66678 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.2457 3.6368 -0.4945 8 6 5.3205 2.9633 -0.6603 9 7 6.2745 2.7929 0.4426 10 6 7.6762 2.4034 0.2707 11 6 5.6969 3.0462 1.6314 12 8 6.2607 2.9964 2.7040 13 6 4.2450 3.4014 1.4324 14 6 4.0378 4.9076 1.5549 15 6 4.3181 5.3422 2.9963 16 7 3.4280 4.6135 3.9090 17 6 3.5621 5.1114 5.2845 18 6 3.0722 6.5349 5.3534 19 1 2.6983 7.0209 4.4644 20 6 3.1005 7.2164 6.5516 21 7 3.5554 6.6244 7.6342 22 14 2.4939 8.9811 6.6369 23 1 1.0424 8.9910 6.9504 24 1 3.2346 9.7084 7.6988 25 1 2.7225 9.6469 5.3294 26 6 3.6696 3.1662 3.8472 27 6 3.3672 2.6583 2.4344 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.4874 3.9179 -1.1592 34 1 5.4164 2.1431 -1.3719 35 1 8.1618 2.3540 1.2454 36 1 8.1844 3.1402 -0.3514 37 1 7.7256 1.4262 -0.2097 38 1 4.7198 5.4247 0.8799 39 1 3.0090 5.1556 1.2936 40 1 4.1408 6.4133 3.0939 41 1 5.3556 5.1213 3.2472 42 1 2.9687 4.4901 5.9553 43 1 4.6092 5.0726 5.5845 44 1 3.5756 7.1040 8.4772 45 1 3.0218 2.6589 4.5622 46 1 4.7117 2.9611 4.0919 47 1 2.3176 2.8364 2.2007 48 1 3.5764 1.5900 2.3794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032559.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -110.165558 kcal Electronic energy + Delta-G solvation = -29728.973546 eV Core-core repulsion = 25784.083248 eV Total energy + Delta-G solvation = -3944.890298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83957 -40.06010 -37.43593 -37.03007 -36.15577 -34.12101 -32.43730 -31.88461 -30.51197 -30.22106 -27.44527 -26.98948 -25.26881 -24.00775 -22.95482 -22.35587 -21.70486 -20.56221 -20.23482 -18.55264 -18.05221 -17.08398 -16.69151 -16.31278 -16.16110 -15.56661 -15.39825 -14.73340 -14.49863 -14.29491 -14.02869 -13.80645 -13.71181 -13.47529 -13.36223 -13.19207 -12.74984 -12.55504 -12.42769 -12.31137 -12.16659 -12.06808 -12.06197 -11.86156 -11.78103 -11.56001 -11.08545 -10.92673 -10.73850 -10.71383 -10.57542 -10.49565 -10.16023 -10.04854 -9.64275 -9.39071 -9.06349 -8.77333 -8.35288 -7.04768 -5.94702 -3.95956 1.94443 2.36321 2.68278 2.92990 3.36373 3.41986 3.45138 4.03234 4.09526 4.32831 4.48287 4.56459 4.68718 4.73912 4.88408 5.00429 5.02010 5.05014 5.08149 5.18196 5.25037 5.32005 5.39016 5.40577 5.48523 5.53876 5.63235 5.66224 5.74765 5.85275 5.88165 6.01620 6.09460 6.12547 6.24181 6.42131 6.44606 6.63362 6.75847 6.77948 7.06456 7.42199 7.51725 7.55117 7.88254 8.19750 8.24627 8.32933 8.66063 9.11830 9.67639 11.16234 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.003813 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.304543 B = 7341.091074 C = 8504.789938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.350 6.350 4 C 0.479 3.521 5 O -0.503 6.503 6 C -0.099 4.099 7 H 0.133 0.867 8 C 0.124 3.876 9 N -0.624 5.624 10 C 0.097 3.903 11 C 0.530 3.470 12 O -0.505 6.505 13 C -0.071 4.071 14 C -0.093 4.093 15 C 0.061 3.939 16 N -0.532 5.532 17 C 0.194 3.806 18 C -0.505 4.505 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.046 3.954 27 C -0.098 4.098 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.031 0.969 42 H 0.029 0.971 43 H -0.008 1.008 44 H 0.260 0.740 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -11.107 -21.916 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.322 3.678 5 O -0.391 6.391 6 C -0.119 4.119 7 H 0.151 0.849 8 C 0.001 3.999 9 N -0.360 5.360 10 C -0.044 4.044 11 C 0.317 3.683 12 O -0.379 6.379 13 C -0.075 4.075 14 C -0.132 4.132 15 C -0.068 4.068 16 N -0.257 5.257 17 C 0.069 3.931 18 C -0.543 4.543 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.083 4.083 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.241 -11.372 -21.289 24.137 hybrid contribution 0.556 0.479 0.300 0.793 sum 0.315 -10.893 -20.989 23.649 Atomic orbital electron populations 1.21813 0.92395 1.02965 1.03854 1.23050 0.95571 0.80045 1.02532 1.86537 1.23988 1.32464 1.83675 1.23110 0.80885 0.91850 0.71974 1.90683 1.60485 1.42775 1.45116 1.22183 0.97616 0.92560 0.99525 0.84925 1.21968 0.85396 1.02907 0.89678 1.48076 1.11032 1.69596 1.07263 1.21516 0.80028 0.99585 1.03303 1.20538 0.88651 0.75605 0.83499 1.90719 1.69050 1.51286 1.26832 1.21057 0.93982 0.99936 0.92495 1.21547 1.02981 0.89411 0.99221 1.21962 0.94942 1.00027 0.89841 1.62053 1.51981 1.00867 1.10832 1.19675 0.95430 0.95565 0.82419 1.21169 1.41146 0.97156 0.94876 0.91874 1.24994 0.95661 0.98322 0.95701 1.69973 1.46911 1.37172 0.99765 0.86520 0.78725 0.84640 0.77615 1.20699 1.21425 1.19900 1.22119 1.00781 0.91109 0.94248 1.21547 0.99435 0.97170 0.95418 0.91467 0.90294 0.91022 0.91364 0.91126 0.89426 0.89672 0.89879 0.92186 0.92194 0.91725 0.89491 0.89425 0.95089 0.95304 0.99036 0.93013 0.91503 0.93049 0.89587 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.35 -3.90 9.97 -39.26 -0.39 -4.29 16 4 C 0.48 5.81 4.91 36.01 0.18 5.98 16 5 O -0.50 -7.27 15.88 -18.75 -0.30 -7.56 16 6 C -0.10 -1.05 3.07 -90.26 -0.28 -1.33 16 7 H 0.13 1.02 7.87 -51.93 -0.41 0.62 16 8 C 0.12 1.16 6.57 -2.95 -0.02 1.14 16 9 N -0.62 -7.92 3.34 -180.24 -0.60 -8.52 16 10 C 0.10 1.01 11.15 59.84 0.67 1.68 16 11 C 0.53 8.68 6.33 -11.04 -0.07 8.61 16 12 O -0.51 -10.36 13.60 5.55 0.08 -10.29 16 13 C -0.07 -1.02 0.46 -155.51 -0.07 -1.09 16 14 C -0.09 -1.37 4.76 -26.90 -0.13 -1.50 16 15 C 0.06 1.23 5.08 -3.78 -0.02 1.21 16 16 N -0.53 -11.95 4.63 -235.97 -1.09 -13.04 16 17 C 0.19 5.30 4.72 -4.97 -0.02 5.28 16 18 C -0.50 -14.41 8.42 -34.44 -0.29 -14.70 16 19 H 0.06 1.75 7.11 -52.49 -0.37 1.38 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 22 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.05 0.93 5.24 -3.77 -0.02 0.91 16 27 C -0.10 -1.58 3.86 -26.89 -0.10 -1.69 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.08 0.99 7.54 -51.93 -0.39 0.60 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.87 6.68 -51.93 -0.35 1.52 16 41 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 42 H 0.03 0.84 7.98 -51.93 -0.41 0.42 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.34 8.01 -51.93 -0.42 0.93 16 46 H 0.05 1.16 5.78 -51.93 -0.30 0.86 16 47 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 48 H 0.05 0.89 7.09 -51.93 -0.37 0.52 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -35.39 376.18 -8.54 -43.94 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.96 Total: -2.16 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.34 Total: 6.09 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.96 Total: -48.25 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.61 Total: -22.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.39 -8.54 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032559.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.229 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds