Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30496 * 125.64577 * 90.02138 * 3 2 1 5 5 C 1.34131 * 109.25387 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.02144 * 0.02562 * 5 4 3 7 7 N 1.35037 * 125.65176 * 269.72246 * 3 2 1 8 8 C 1.46504 * 126.39704 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47036 * 0.02562 * 8 7 3 10 10 C 1.52995 * 109.47244 * 240.00067 * 8 7 3 11 11 C 1.53001 * 109.47018 * 120.00220 * 8 7 3 12 12 C 1.50699 * 109.47192 * 185.00096 * 11 8 7 13 13 O 1.21286 * 119.99837 * 359.97438 * 12 11 8 14 14 N 1.34779 * 120.00031 * 179.97438 * 12 11 8 15 15 C 1.46501 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47014 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.47724 * 304.99603 * 16 15 14 18 18 O 1.42901 * 109.47679 * 64.99997 * 16 15 14 19 19 C 1.53007 * 109.46975 * 184.99561 * 16 15 14 20 20 N 1.46507 * 109.47047 * 179.97438 * 19 16 15 21 21 C 1.36934 * 119.99995 * 180.02562 * 20 19 16 22 22 H 1.08002 * 119.99847 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99988 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46785 * 90.00332 * 25 23 21 27 27 H 1.48499 * 109.47053 * 209.99836 * 25 23 21 28 28 H 1.48492 * 109.46928 * 330.00091 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08004 * 125.98782 * 179.97438 * 5 4 3 35 35 H 1.07997 * 126.59386 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47296 * 300.00064 * 10 8 7 37 37 H 1.09000 * 109.47138 * 59.99854 * 10 8 7 38 38 H 1.09000 * 109.47576 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47377 * 304.99854 * 11 8 7 40 40 H 1.08997 * 109.47364 * 65.00134 * 11 8 7 41 41 H 0.96999 * 120.00005 * 0.02562 * 14 12 11 42 42 H 1.09009 * 109.46935 * 300.00054 * 15 14 12 43 43 H 1.08996 * 109.47598 * 59.99504 * 15 14 12 44 44 H 0.96698 * 114.00102 * 59.99188 * 18 16 15 45 45 H 1.08994 * 109.47014 * 299.99757 * 19 16 15 46 46 H 1.09001 * 109.46805 * 60.00496 * 19 16 15 47 47 H 0.96999 * 119.99784 * 0.02562 * 20 19 16 48 48 H 0.97010 * 119.99673 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2862 2.1377 1.0605 5 6 2.7145 3.3512 0.6819 6 6 2.7259 3.3877 -0.6642 7 7 2.2997 2.1611 -1.0973 8 6 2.1561 1.7330 -2.4910 9 1 1.7930 0.7057 -2.5199 10 6 3.5135 1.8145 -3.1920 11 6 1.1577 2.6466 -3.2048 12 6 0.9167 2.1335 -4.6011 13 8 1.4877 1.1356 -4.9875 14 7 0.0667 2.7836 -5.4206 15 6 -0.1680 2.2845 -6.7778 16 6 -1.1662 3.1981 -7.4916 17 1 -2.0750 3.2796 -6.8954 18 8 -0.5893 4.4946 -7.6601 19 6 -1.5065 2.6094 -8.8622 20 7 -2.4629 3.4840 -9.5456 21 6 -2.9163 3.1582 -10.7959 22 1 -2.5686 2.2567 -11.2785 23 6 -3.8220 3.9871 -11.4435 24 7 -4.2453 5.0859 -10.8556 25 14 -4.4401 3.5430 -13.1495 26 1 -5.6648 2.7116 -13.0313 27 1 -4.7553 4.7846 -13.9006 28 1 -3.3915 2.7797 -13.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9994 4.1578 1.3412 35 1 3.0198 4.2226 -1.2831 36 1 3.8763 2.8420 -3.1632 37 1 4.2248 1.1637 -2.6835 38 1 3.4066 1.4964 -4.2291 39 1 0.2170 2.6573 -2.6543 40 1 1.5615 3.6579 -3.2540 41 1 -0.3896 3.5819 -5.1117 42 1 0.7726 2.2738 -7.3287 43 1 -0.5715 1.2731 -6.7284 44 1 0.2247 4.4981 -8.1822 45 1 -0.5978 2.5280 -9.4585 46 1 -1.9467 1.6205 -8.7337 47 1 -2.7748 4.2938 -9.1123 48 1 -4.8780 5.6654 -11.3084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699046561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -27.752401 kcal Electronic energy + Delta-G solvation = -27065.716692 eV Core-core repulsion = 23156.692848 eV Total energy + Delta-G solvation = -3909.023844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49676 -40.17410 -37.86478 -36.02565 -34.55839 -34.14032 -34.08130 -31.51897 -31.16357 -29.61219 -28.90599 -28.09195 -25.40203 -24.24577 -23.45542 -22.59768 -21.57086 -21.37365 -20.39751 -19.58110 -17.93451 -17.24426 -17.08530 -16.44884 -16.26342 -15.80370 -15.63958 -15.13789 -15.10704 -14.55617 -14.49838 -14.22525 -14.06436 -13.77031 -13.70666 -13.55758 -13.28046 -13.06761 -12.89625 -12.62553 -12.46710 -12.21888 -11.99580 -11.97362 -11.86825 -11.65009 -11.42387 -11.01593 -10.87018 -10.73537 -10.37698 -10.22729 -10.12398 -9.92522 -9.85968 -9.58196 -9.30184 -8.96507 -8.62808 -7.00580 -5.81934 -3.12061 1.75257 2.26875 2.31726 2.89777 2.99745 3.39555 3.44665 3.46514 3.98057 4.08193 4.24328 4.35345 4.46829 4.51206 4.61058 4.66506 4.76543 4.81057 4.89360 4.93749 5.01417 5.04853 5.12613 5.23952 5.25375 5.40581 5.43873 5.48487 5.50668 5.50978 5.64941 5.65548 5.77423 5.82491 5.84232 6.06693 6.10525 6.21705 6.41813 6.50852 6.57819 6.90449 7.20863 7.62692 7.82515 7.85904 7.91219 8.36065 9.47903 10.03723 10.39462 11.40253 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.001853 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.883488 B =15110.080850 C =15245.811594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.152 4.152 12 C 0.518 3.482 13 O -0.541 6.541 14 N -0.717 5.717 15 C 0.089 3.911 16 C 0.089 3.911 17 H 0.104 0.896 18 O -0.552 6.552 19 C 0.127 3.873 20 N -0.726 5.726 21 C -0.245 4.245 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.406 0.594 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.673 -6.070 21.659 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.193 4.193 12 C 0.303 3.697 13 O -0.419 6.419 14 N -0.368 5.368 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.122 0.878 18 O -0.357 6.357 19 C -0.002 4.002 20 N -0.371 5.371 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.221 0.779 45 H 0.041 0.959 46 H 0.046 0.954 47 H 0.224 0.776 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.439 -6.981 22.225 27.408 hybrid contribution -0.137 0.772 -1.893 2.049 sum 14.302 -6.210 20.332 25.622 Atomic orbital electron populations 1.21745 0.93799 1.02462 1.02510 1.19995 0.96558 0.87446 1.04029 1.23289 1.03933 0.96709 0.81348 1.70245 1.18289 1.04311 1.28255 1.22273 1.06521 0.96207 0.92781 1.22622 1.09609 0.89924 0.96760 1.45610 1.48829 1.11728 1.07030 1.21155 0.97223 0.99726 0.77515 0.87070 1.22284 0.94367 1.02657 1.03043 1.21996 1.01669 1.01517 0.94141 1.20197 0.79101 0.83820 0.86606 1.90704 1.48958 1.25534 1.76679 1.45931 1.45711 1.30727 1.14448 1.22155 1.00383 0.98994 0.81967 1.22393 0.94909 0.82896 0.96935 0.87789 1.86581 1.44674 1.28481 1.75951 1.21190 0.94068 0.94502 0.90440 1.42226 1.50569 1.26516 1.17751 1.19209 1.20179 1.05582 0.92683 0.91198 1.24772 1.00089 0.97146 0.98830 1.69678 1.35881 1.14038 1.38138 0.86172 0.78748 0.77127 0.84008 1.21647 1.21692 1.20737 0.91800 0.92871 0.91465 0.90361 0.88705 0.81468 0.81150 0.92170 0.91886 0.88350 0.88052 0.87895 0.75859 0.90887 0.90260 0.77902 0.95944 0.95385 0.77642 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.04 -0.30 6.08 -27.88 -0.17 -0.47 16 3 C 0.21 2.06 7.16 -155.42 -1.11 0.95 16 4 N -0.49 -5.75 11.25 -10.81 -0.12 -5.87 16 5 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 6 C -0.06 -0.46 10.70 -16.56 -0.18 -0.64 16 7 N -0.45 -3.82 2.61 -106.83 -0.28 -4.10 16 8 C 0.15 1.11 2.64 -67.93 -0.18 0.94 16 9 H 0.11 0.89 6.47 -51.93 -0.34 0.55 16 10 C -0.17 -1.27 8.99 37.15 0.33 -0.93 16 11 C -0.15 -1.05 5.18 -27.88 -0.14 -1.19 16 12 C 0.52 4.96 7.55 -10.98 -0.08 4.88 16 13 O -0.54 -6.81 13.97 5.55 0.08 -6.73 16 14 N -0.72 -6.78 5.50 -60.29 -0.33 -7.11 16 15 C 0.09 1.01 5.31 -4.05 -0.02 0.99 16 16 C 0.09 1.24 3.09 -26.73 -0.08 1.16 16 17 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 18 O -0.55 -8.08 13.03 -35.23 -0.46 -8.54 16 19 C 0.13 2.33 5.92 -4.03 -0.02 2.30 16 20 N -0.73 -17.83 5.49 -59.90 -0.33 -18.16 16 21 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.48 7.07 -51.93 -0.37 0.12 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.06 0.41 7.96 -51.93 -0.41 0.00 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.90 5.95 -51.93 -0.31 0.60 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 41 H 0.41 3.31 8.47 -40.82 -0.35 2.96 16 42 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.37 4.54 9.05 45.56 0.41 4.95 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.39 10.26 7.54 -40.82 -0.31 9.96 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -34.37 398.07 -8.62 -42.99 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.13 Total: 12.11 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.75 Total: -0.49 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.34 Total: -62.43 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.38 Total: -15.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.37 -8.62 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.236 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds