Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30496 * 125.64577 * 90.02138 * 3 2 1 5 5 C 1.34131 * 109.25387 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.02144 * 0.02562 * 5 4 3 7 7 N 1.35037 * 125.65176 * 269.72246 * 3 2 1 8 8 C 1.46504 * 126.39704 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47036 * 0.02562 * 8 7 3 10 10 C 1.52995 * 109.47244 * 240.00067 * 8 7 3 11 11 C 1.53001 * 109.47018 * 120.00220 * 8 7 3 12 12 C 1.50699 * 109.47192 * 185.00096 * 11 8 7 13 13 O 1.21286 * 119.99837 * 359.97438 * 12 11 8 14 14 N 1.34779 * 120.00031 * 179.97438 * 12 11 8 15 15 C 1.46501 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47014 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.47724 * 304.99603 * 16 15 14 18 18 O 1.42901 * 109.47679 * 64.99997 * 16 15 14 19 19 C 1.53007 * 109.46975 * 184.99561 * 16 15 14 20 20 N 1.46507 * 109.47047 * 179.97438 * 19 16 15 21 21 C 1.36934 * 119.99995 * 180.02562 * 20 19 16 22 22 H 1.08002 * 119.99847 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99988 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46785 * 90.00332 * 25 23 21 27 27 H 1.48499 * 109.47053 * 209.99836 * 25 23 21 28 28 H 1.48492 * 109.46928 * 330.00091 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08004 * 125.98782 * 179.97438 * 5 4 3 35 35 H 1.07997 * 126.59386 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47296 * 300.00064 * 10 8 7 37 37 H 1.09000 * 109.47138 * 59.99854 * 10 8 7 38 38 H 1.09000 * 109.47576 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47377 * 304.99854 * 11 8 7 40 40 H 1.08997 * 109.47364 * 65.00134 * 11 8 7 41 41 H 0.96999 * 120.00005 * 0.02562 * 14 12 11 42 42 H 1.09009 * 109.46935 * 300.00054 * 15 14 12 43 43 H 1.08996 * 109.47598 * 59.99504 * 15 14 12 44 44 H 0.96698 * 114.00102 * 59.99188 * 18 16 15 45 45 H 1.08994 * 109.47014 * 299.99757 * 19 16 15 46 46 H 1.09001 * 109.46805 * 60.00496 * 19 16 15 47 47 H 0.96999 * 119.99784 * 0.02562 * 20 19 16 48 48 H 0.97010 * 119.99673 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2862 2.1377 1.0605 5 6 2.7145 3.3512 0.6819 6 6 2.7259 3.3877 -0.6642 7 7 2.2997 2.1611 -1.0973 8 6 2.1561 1.7330 -2.4910 9 1 1.7930 0.7057 -2.5199 10 6 3.5135 1.8145 -3.1920 11 6 1.1577 2.6466 -3.2048 12 6 0.9167 2.1335 -4.6011 13 8 1.4877 1.1356 -4.9875 14 7 0.0667 2.7836 -5.4206 15 6 -0.1680 2.2845 -6.7778 16 6 -1.1662 3.1981 -7.4916 17 1 -2.0750 3.2796 -6.8954 18 8 -0.5893 4.4946 -7.6601 19 6 -1.5065 2.6094 -8.8622 20 7 -2.4629 3.4840 -9.5456 21 6 -2.9163 3.1582 -10.7959 22 1 -2.5686 2.2567 -11.2785 23 6 -3.8220 3.9871 -11.4435 24 7 -4.2453 5.0859 -10.8556 25 14 -4.4401 3.5430 -13.1495 26 1 -5.6648 2.7116 -13.0313 27 1 -4.7553 4.7846 -13.9006 28 1 -3.3915 2.7797 -13.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9994 4.1578 1.3412 35 1 3.0198 4.2226 -1.2831 36 1 3.8763 2.8420 -3.1632 37 1 4.2248 1.1637 -2.6835 38 1 3.4066 1.4964 -4.2291 39 1 0.2170 2.6573 -2.6543 40 1 1.5615 3.6579 -3.2540 41 1 -0.3896 3.5819 -5.1117 42 1 0.7726 2.2738 -7.3287 43 1 -0.5715 1.2731 -6.7284 44 1 0.2247 4.4981 -8.1822 45 1 -0.5978 2.5280 -9.4585 46 1 -1.9467 1.6205 -8.7337 47 1 -2.7748 4.2938 -9.1123 48 1 -4.8780 5.6654 -11.3084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699046561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -53.353291 kcal Electronic energy + Delta-G solvation = -27066.826830 eV Core-core repulsion = 23156.692848 eV Total energy + Delta-G solvation = -3910.133982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.15674 -40.98629 -39.02999 -36.74171 -36.05003 -35.30000 -34.70638 -33.20778 -31.99867 -30.76935 -29.54474 -28.99795 -26.86945 -24.93795 -24.51187 -23.79855 -22.76429 -22.12102 -21.21653 -20.21784 -19.25463 -18.57801 -18.04756 -17.30073 -17.22883 -16.70054 -16.46548 -16.39362 -16.01063 -15.76700 -15.47014 -15.15381 -15.00890 -14.79731 -14.65528 -14.38502 -14.24499 -14.11795 -13.94085 -13.81124 -13.35077 -13.18853 -12.96700 -12.82171 -12.75187 -12.53989 -12.52173 -12.21290 -12.16928 -11.97567 -11.97033 -11.81053 -11.21881 -11.01153 -10.95673 -10.78395 -10.57317 -10.13664 -9.28299 -9.01742 -7.95846 -5.25177 1.10370 1.47504 1.48924 1.53958 1.57391 1.63401 2.19520 2.23276 2.55762 3.35598 3.38503 3.45544 3.49955 3.60257 3.64612 3.76325 3.91540 4.03228 4.07986 4.20775 4.23501 4.35097 4.40457 4.41961 4.47672 4.50086 4.62922 4.66708 4.67714 4.73041 4.82657 4.86709 4.93313 4.98398 5.07659 5.14284 5.21619 5.28002 5.36529 5.44056 5.47768 5.87465 6.25454 6.25981 6.46485 6.79821 7.15544 7.18369 7.32822 8.08607 8.31168 9.27220 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.001853 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.883488 B =15110.080850 C =15245.811594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.106 0.894 10 C -0.160 4.160 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.571 6.571 14 N -0.711 5.711 15 C 0.103 3.897 16 C 0.107 3.893 17 H 0.100 0.900 18 O -0.563 6.563 19 C 0.121 3.879 20 N -0.740 5.740 21 C -0.248 4.248 22 H 0.076 0.924 23 C -0.076 4.076 24 N -0.967 5.967 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.269 1.269 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.385 0.615 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.377 0.623 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -6.401 21.602 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.124 0.876 10 C -0.217 4.217 11 C -0.182 4.182 12 C 0.307 3.693 13 O -0.451 6.451 14 N -0.363 5.363 15 C -0.022 4.022 16 C 0.047 3.953 17 H 0.118 0.882 18 O -0.370 6.370 19 C -0.007 4.007 20 N -0.383 5.383 21 C -0.380 4.380 22 H 0.094 0.906 23 C -0.269 4.269 24 N -0.618 5.618 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.194 1.194 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.251 0.749 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.234 0.766 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.210 -7.338 22.183 27.879 hybrid contribution -0.289 0.837 -1.825 2.029 sum 14.920 -6.501 20.357 26.063 Atomic orbital electron populations 1.21700 0.93343 1.03197 1.01739 1.20082 0.96887 0.86469 1.04606 1.23671 1.04001 0.97505 0.81450 1.70209 1.19567 1.05512 1.29595 1.22653 1.07328 0.96235 0.93984 1.23056 1.08211 0.90280 0.96625 1.45657 1.48481 1.11746 1.07028 1.21135 0.97388 0.99742 0.77059 0.87558 1.22203 0.94332 1.03223 1.01990 1.21938 1.02086 1.02115 0.92108 1.20564 0.78254 0.83172 0.87309 1.90705 1.50063 1.26913 1.77411 1.45826 1.45794 1.31016 1.13664 1.21841 0.99493 0.98003 0.82819 1.22100 0.95614 0.82945 0.94626 0.88190 1.86561 1.45447 1.28763 1.76193 1.21422 0.92862 0.93890 0.92488 1.42415 1.51660 1.26915 1.17325 1.19638 1.19323 1.05277 0.93733 0.90560 1.25597 1.01098 0.97468 1.02697 1.69833 1.36974 1.15296 1.39681 0.85134 0.78305 0.76571 0.79696 1.21401 1.22246 1.19373 0.92995 0.93106 0.89989 0.89252 0.88627 0.80181 0.78355 0.91032 0.92256 0.89741 0.87018 0.85826 0.74855 0.90662 0.90480 0.76629 0.95148 0.94913 0.79071 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.04 -0.58 6.08 29.85 0.18 -0.39 16 3 C 0.20 3.70 7.16 138.13 0.99 4.69 16 4 N -0.53 -12.19 11.25 -188.13 -2.12 -14.31 16 5 C -0.06 -1.02 11.87 83.52 0.99 -0.02 16 6 C -0.05 -0.70 10.70 83.09 0.89 0.19 16 7 N -0.45 -6.85 2.61 -491.91 -1.28 -8.13 16 8 C 0.15 1.98 2.64 44.99 0.12 2.10 16 9 H 0.11 1.54 6.47 -2.39 -0.02 1.52 16 10 C -0.16 -2.16 8.99 71.98 0.65 -1.51 16 11 C -0.14 -1.57 5.18 29.85 0.15 -1.42 16 12 C 0.52 8.84 7.55 87.66 0.66 9.50 16 13 O -0.57 -13.48 13.97 -3.05 -0.04 -13.52 16 14 N -0.71 -11.83 5.50 -463.06 -2.55 -14.38 16 15 C 0.10 2.15 5.31 86.38 0.46 2.61 16 16 C 0.11 2.84 3.09 30.59 0.09 2.93 16 17 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 18 O -0.56 -15.63 13.03 -148.98 -1.94 -17.57 16 19 C 0.12 4.29 5.92 86.38 0.51 4.81 16 20 N -0.74 -36.12 5.49 -343.43 -1.89 -38.01 16 21 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 24 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 25 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.01 7.07 -2.39 -0.02 0.99 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.44 5.95 -2.39 -0.01 1.43 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.12 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.41 5.69 8.47 -92.71 -0.79 4.91 16 42 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.38 8.69 9.05 -74.06 -0.67 8.02 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.38 20.00 7.54 -92.71 -0.70 19.30 16 48 H 0.25 14.79 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -73.63 398.07 -0.96 -74.59 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -1.17 Total: 36.47 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 7.72 Total: 5.87 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -7.55 Total: -133.27 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.98 Total: -31.09 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.63 -0.96 -74.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds