Wall clock time and date at job start Fri Apr 10 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47185 * 2 1 4 4 N 1.30499 * 125.65398 * 269.95417 * 3 2 1 5 5 C 1.34121 * 109.26255 * 180.02562 * 4 3 2 6 6 C 1.34669 * 108.01705 * 359.73528 * 5 4 3 7 7 N 1.35051 * 125.65090 * 90.00357 * 3 2 1 8 8 C 1.46499 * 126.39461 * 359.95999 * 7 3 2 9 9 H 1.09002 * 109.47391 * 0.02562 * 8 7 3 10 10 C 1.53000 * 109.46840 * 120.00499 * 8 7 3 11 11 C 1.53002 * 109.46799 * 240.00265 * 8 7 3 12 12 C 1.50703 * 109.46970 * 175.00372 * 11 8 7 13 13 O 1.21282 * 119.99998 * 359.97438 * 12 11 8 14 14 N 1.34777 * 120.00049 * 180.02562 * 12 11 8 15 15 C 1.46507 * 119.99803 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.46653 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47453 * 60.00245 * 16 15 14 18 18 O 1.42903 * 109.47380 * 299.99942 * 16 15 14 19 19 C 1.53004 * 109.47179 * 180.02562 * 16 15 14 20 20 N 1.46491 * 109.47540 * 185.00094 * 19 16 15 21 21 C 1.36935 * 120.00248 * 180.02562 * 20 19 16 22 22 H 1.08008 * 119.99784 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00143 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99981 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47150 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47390 * 119.99749 * 25 23 21 28 28 H 1.48499 * 109.46892 * 239.99521 * 25 23 21 29 29 H 1.08994 * 109.46568 * 60.00016 * 1 2 3 30 30 H 1.08996 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47019 * 300.00056 * 1 2 3 32 32 H 1.09003 * 109.46777 * 239.99483 * 2 1 3 33 33 H 1.09004 * 109.47112 * 120.00089 * 2 1 3 34 34 H 1.08002 * 125.99287 * 180.02562 * 5 4 3 35 35 H 1.08004 * 126.59000 * 180.27605 * 6 5 4 36 36 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 38 38 H 1.08992 * 109.47399 * 59.99666 * 10 8 7 39 39 H 1.09000 * 109.47059 * 295.00070 * 11 8 7 40 40 H 1.08996 * 109.47073 * 55.00163 * 11 8 7 41 41 H 0.96988 * 119.99885 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46999 * 300.00273 * 15 14 12 43 43 H 1.09000 * 109.46991 * 59.99872 * 15 14 12 44 44 H 0.96703 * 113.99959 * 300.00049 * 18 16 15 45 45 H 1.09005 * 109.46336 * 305.00294 * 19 16 15 46 46 H 1.09004 * 109.47034 * 64.99479 * 19 16 15 47 47 H 0.96997 * 120.00003 * 359.97438 * 20 19 16 48 48 H 0.96998 * 119.99414 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2868 2.1376 -1.0604 5 6 2.7159 3.3506 -0.6819 6 6 2.7224 3.3889 0.6642 7 7 2.2949 2.1628 1.0974 8 6 2.1436 1.7373 2.4910 9 1 1.7802 0.7100 2.5199 10 6 3.4975 1.8190 3.1989 11 6 1.1424 2.6531 3.1980 12 6 0.8937 2.1427 4.5941 13 8 1.4611 1.1446 4.9848 14 7 0.0401 2.7949 5.4079 15 6 -0.2020 2.2984 6.7649 16 6 -1.2031 3.2142 7.4719 17 1 -2.1408 3.2251 6.9163 18 8 -0.6727 4.5395 7.5371 19 6 -1.4555 2.6961 8.8892 20 7 -2.5015 3.5013 9.5245 21 6 -2.8981 3.2216 10.8049 22 1 -2.4400 2.4071 11.3464 23 6 -3.8897 3.9843 11.4067 24 7 -4.4483 4.9766 10.7467 25 14 -4.4302 3.6031 13.1537 26 1 -3.6529 2.4486 13.6716 27 1 -4.1906 4.7883 14.0157 28 1 -5.8771 3.2691 13.1624 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0014 4.1571 -1.3411 35 1 3.0120 4.2253 1.2832 36 1 3.3851 1.5019 4.2358 37 1 4.2109 1.1666 2.6953 38 1 3.8613 2.8460 3.1700 39 1 1.5467 3.6641 3.2474 40 1 0.2046 2.6635 2.6426 41 1 -0.4139 3.5929 5.0953 42 1 -0.6061 1.2873 6.7151 43 1 0.7357 2.2880 7.3206 44 1 0.1635 4.6053 8.0185 45 1 -1.7755 1.6551 8.8438 46 1 -0.5369 2.7688 9.4716 47 1 -2.9127 4.2331 9.0383 48 1 -5.1409 5.5097 11.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699046562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:11 Heat of formation + Delta-G solvation = -27.943275 kcal Electronic energy + Delta-G solvation = -27069.573685 eV Core-core repulsion = 23160.541564 eV Total energy + Delta-G solvation = -3909.032121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49626 -40.17515 -37.87503 -36.02383 -34.54837 -34.13959 -34.10086 -31.52875 -31.16758 -29.61121 -28.90420 -28.09435 -25.40360 -24.24700 -23.45455 -22.59347 -21.57027 -21.38111 -20.40484 -19.58178 -17.93442 -17.24953 -17.09269 -16.45507 -16.25071 -15.80392 -15.63171 -15.14827 -15.12971 -14.56018 -14.49677 -14.21513 -14.06182 -13.77080 -13.70425 -13.56936 -13.27358 -13.05480 -12.91122 -12.62688 -12.48327 -12.21538 -11.99565 -11.97526 -11.87159 -11.64817 -11.42484 -11.02830 -10.88481 -10.74211 -10.37635 -10.20891 -10.11597 -9.92281 -9.86549 -9.59467 -9.29968 -8.97461 -8.62697 -7.01040 -5.82607 -3.12651 1.75233 2.27103 2.31744 2.89875 2.99672 3.39007 3.44608 3.46965 3.98114 4.08332 4.24381 4.35303 4.47131 4.51120 4.60372 4.66766 4.76547 4.81039 4.89432 4.93701 5.01491 5.04933 5.11594 5.23993 5.25373 5.40577 5.43947 5.48649 5.50776 5.51487 5.65003 5.65519 5.77439 5.82606 5.83923 6.06662 6.09899 6.21594 6.41713 6.50918 6.57194 6.90504 7.21492 7.62843 7.80613 7.85988 7.91498 8.35361 9.47225 10.02911 10.38326 11.39734 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.001852 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.157215 B =15113.558604 C =15225.575571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.152 4.152 12 C 0.518 3.482 13 O -0.541 6.541 14 N -0.717 5.717 15 C 0.089 3.911 16 C 0.088 3.912 17 H 0.105 0.895 18 O -0.553 6.553 19 C 0.128 3.872 20 N -0.726 5.726 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.407 0.593 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.373 0.627 45 H 0.029 0.971 46 H 0.023 0.977 47 H 0.388 0.612 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 -5.863 -21.470 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.193 4.193 12 C 0.303 3.697 13 O -0.419 6.419 14 N -0.368 5.368 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.123 0.877 18 O -0.358 6.358 19 C -0.001 4.001 20 N -0.371 5.371 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.242 0.758 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.220 0.780 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.849 -6.819 -22.013 27.415 hybrid contribution -0.109 0.836 1.889 2.068 sum 14.740 -5.983 -20.125 25.653 Atomic orbital electron populations 1.21745 0.93800 1.02468 1.02509 1.19995 0.96552 0.87451 1.04032 1.23290 1.03961 0.96686 0.81343 1.70238 1.18255 1.04341 1.28264 1.22269 1.06510 0.96221 0.92779 1.22621 1.09593 0.89942 0.96762 1.45611 1.48843 1.11712 1.07029 1.21156 0.97192 0.99747 0.77530 0.87067 1.22285 0.94418 1.02647 1.03002 1.21995 1.01627 1.01506 0.94180 1.20195 0.79110 0.83810 0.86612 1.90703 1.49241 1.25515 1.76426 1.45913 1.45537 1.30763 1.14589 1.22143 1.00368 0.99025 0.81998 1.22412 0.95662 0.82089 0.96986 0.87694 1.86585 1.42961 1.27749 1.78459 1.21195 0.93385 0.95265 0.90288 1.42238 1.42687 1.37589 1.14562 1.19260 1.15778 1.12319 0.90231 0.91122 1.24776 0.99344 0.98155 0.98599 1.69685 1.29502 1.21633 1.36930 0.86101 0.78195 0.77405 0.84361 1.20525 1.21782 1.21789 0.91807 0.91462 0.92867 0.88703 0.90356 0.81468 0.81153 0.88355 0.91892 0.92167 0.87898 0.88052 0.75794 0.90251 0.90902 0.77969 0.95369 0.95914 0.77732 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.04 -0.30 6.08 -27.88 -0.17 -0.47 16 3 C 0.21 2.06 7.16 -155.41 -1.11 0.95 16 4 N -0.49 -5.75 11.25 -10.82 -0.12 -5.87 16 5 C -0.03 -0.29 11.87 -17.82 -0.21 -0.50 16 6 C -0.06 -0.46 10.70 -16.56 -0.18 -0.64 16 7 N -0.45 -3.82 2.61 -106.83 -0.28 -4.10 16 8 C 0.15 1.11 2.64 -67.93 -0.18 0.93 16 9 H 0.11 0.89 6.48 -51.93 -0.34 0.55 16 10 C -0.17 -1.27 9.00 37.16 0.33 -0.93 16 11 C -0.15 -1.05 5.18 -27.88 -0.14 -1.19 16 12 C 0.52 4.96 7.55 -10.98 -0.08 4.88 16 13 O -0.54 -6.81 13.97 5.56 0.08 -6.73 16 14 N -0.72 -6.78 5.45 -60.29 -0.33 -7.11 16 15 C 0.09 1.01 5.34 -4.04 -0.02 0.99 16 16 C 0.09 1.24 3.09 -26.73 -0.08 1.15 16 17 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 18 O -0.55 -7.96 13.03 -35.23 -0.46 -8.41 16 19 C 0.13 2.34 5.90 -4.04 -0.02 2.31 16 20 N -0.73 -17.84 5.55 -59.91 -0.33 -18.17 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.48 7.08 -51.93 -0.37 0.12 16 34 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.10 0.90 5.95 -51.93 -0.31 0.59 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 7.96 -51.93 -0.41 -0.01 16 39 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.41 3.34 8.35 -40.82 -0.34 3.00 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.37 4.39 9.05 45.56 0.41 4.80 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.39 10.23 7.67 -40.82 -0.31 9.92 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.37 398.08 -8.62 -42.99 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.13 Total: 11.98 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.75 Total: -0.48 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.34 Total: -62.44 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.38 Total: -15.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.37 -8.62 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.048 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds