Wall clock time and date at job start Fri Apr 10 2020 18:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47185 * 2 1 4 4 N 1.30499 * 125.65398 * 269.95417 * 3 2 1 5 5 C 1.34121 * 109.26255 * 180.02562 * 4 3 2 6 6 C 1.34669 * 108.01705 * 359.73528 * 5 4 3 7 7 N 1.35051 * 125.65090 * 90.00357 * 3 2 1 8 8 C 1.46499 * 126.39461 * 359.95999 * 7 3 2 9 9 H 1.09002 * 109.47391 * 0.02562 * 8 7 3 10 10 C 1.53000 * 109.46840 * 120.00499 * 8 7 3 11 11 C 1.53002 * 109.46799 * 240.00265 * 8 7 3 12 12 C 1.50703 * 109.46970 * 175.00372 * 11 8 7 13 13 O 1.21282 * 119.99998 * 359.97438 * 12 11 8 14 14 N 1.34777 * 120.00049 * 180.02562 * 12 11 8 15 15 C 1.46507 * 119.99803 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.46653 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47453 * 60.00245 * 16 15 14 18 18 O 1.42903 * 109.47380 * 299.99942 * 16 15 14 19 19 C 1.53004 * 109.47179 * 180.02562 * 16 15 14 20 20 N 1.46491 * 109.47540 * 185.00094 * 19 16 15 21 21 C 1.36935 * 120.00248 * 180.02562 * 20 19 16 22 22 H 1.08008 * 119.99784 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00143 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99981 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47150 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47390 * 119.99749 * 25 23 21 28 28 H 1.48499 * 109.46892 * 239.99521 * 25 23 21 29 29 H 1.08994 * 109.46568 * 60.00016 * 1 2 3 30 30 H 1.08996 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47019 * 300.00056 * 1 2 3 32 32 H 1.09003 * 109.46777 * 239.99483 * 2 1 3 33 33 H 1.09004 * 109.47112 * 120.00089 * 2 1 3 34 34 H 1.08002 * 125.99287 * 180.02562 * 5 4 3 35 35 H 1.08004 * 126.59000 * 180.27605 * 6 5 4 36 36 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 38 38 H 1.08992 * 109.47399 * 59.99666 * 10 8 7 39 39 H 1.09000 * 109.47059 * 295.00070 * 11 8 7 40 40 H 1.08996 * 109.47073 * 55.00163 * 11 8 7 41 41 H 0.96988 * 119.99885 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46999 * 300.00273 * 15 14 12 43 43 H 1.09000 * 109.46991 * 59.99872 * 15 14 12 44 44 H 0.96703 * 113.99959 * 300.00049 * 18 16 15 45 45 H 1.09005 * 109.46336 * 305.00294 * 19 16 15 46 46 H 1.09004 * 109.47034 * 64.99479 * 19 16 15 47 47 H 0.96997 * 120.00003 * 359.97438 * 20 19 16 48 48 H 0.96998 * 119.99414 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2868 2.1376 -1.0604 5 6 2.7159 3.3506 -0.6819 6 6 2.7224 3.3889 0.6642 7 7 2.2949 2.1628 1.0974 8 6 2.1436 1.7373 2.4910 9 1 1.7802 0.7100 2.5199 10 6 3.4975 1.8190 3.1989 11 6 1.1424 2.6531 3.1980 12 6 0.8937 2.1427 4.5941 13 8 1.4611 1.1446 4.9848 14 7 0.0401 2.7949 5.4079 15 6 -0.2020 2.2984 6.7649 16 6 -1.2031 3.2142 7.4719 17 1 -2.1408 3.2251 6.9163 18 8 -0.6727 4.5395 7.5371 19 6 -1.4555 2.6961 8.8892 20 7 -2.5015 3.5013 9.5245 21 6 -2.8981 3.2216 10.8049 22 1 -2.4400 2.4071 11.3464 23 6 -3.8897 3.9843 11.4067 24 7 -4.4483 4.9766 10.7467 25 14 -4.4302 3.6031 13.1537 26 1 -3.6529 2.4486 13.6716 27 1 -4.1906 4.7883 14.0157 28 1 -5.8771 3.2691 13.1624 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0014 4.1571 -1.3411 35 1 3.0120 4.2253 1.2832 36 1 3.3851 1.5019 4.2358 37 1 4.2109 1.1666 2.6953 38 1 3.8613 2.8460 3.1700 39 1 1.5467 3.6641 3.2474 40 1 0.2046 2.6635 2.6426 41 1 -0.4139 3.5929 5.0953 42 1 -0.6061 1.2873 6.7151 43 1 0.7357 2.2880 7.3206 44 1 0.1635 4.6053 8.0185 45 1 -1.7755 1.6551 8.8438 46 1 -0.5369 2.7688 9.4716 47 1 -2.9127 4.2331 9.0383 48 1 -5.1409 5.5097 11.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699046562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:10 Heat of formation + Delta-G solvation = -53.545234 kcal Electronic energy + Delta-G solvation = -27070.683870 eV Core-core repulsion = 23160.541564 eV Total energy + Delta-G solvation = -3910.142306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.15617 -40.98779 -39.03225 -36.73926 -36.06987 -35.28348 -34.70688 -33.22248 -31.99727 -30.76873 -29.54360 -28.99897 -26.87212 -24.93993 -24.51178 -23.79858 -22.76918 -22.11996 -21.21900 -20.21856 -19.25937 -18.57760 -18.05011 -17.30710 -17.22576 -16.68462 -16.48642 -16.37857 -16.03687 -15.76111 -15.46776 -15.15207 -15.00084 -14.78891 -14.66512 -14.38731 -14.25327 -14.13117 -13.93471 -13.80398 -13.35392 -13.18885 -12.97413 -12.83032 -12.77986 -12.54016 -12.52188 -12.21133 -12.12692 -11.97576 -11.96791 -11.81859 -11.21386 -11.02301 -10.96455 -10.78689 -10.57469 -10.13500 -9.28168 -9.02242 -7.96515 -5.25785 1.10355 1.47450 1.47840 1.54137 1.57979 1.63435 2.19631 2.23081 2.55414 3.35233 3.38575 3.46260 3.50508 3.59280 3.64712 3.76515 3.91535 4.01763 4.08109 4.21136 4.23539 4.35007 4.40218 4.41703 4.47791 4.50104 4.62856 4.66759 4.67761 4.73011 4.82727 4.86821 4.93564 4.98317 5.07639 5.14583 5.21575 5.27917 5.36240 5.44090 5.47819 5.87565 6.25115 6.26023 6.46920 6.79883 7.15827 7.18474 7.32221 8.07780 8.30035 9.26851 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.001852 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.157215 B =15113.558604 C =15225.575571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.106 0.894 10 C -0.160 4.160 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.571 6.571 14 N -0.711 5.711 15 C 0.103 3.897 16 C 0.107 3.893 17 H 0.099 0.901 18 O -0.563 6.563 19 C 0.121 3.879 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.415 0.585 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.385 0.615 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.964 -6.112 -21.360 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.124 0.876 10 C -0.217 4.217 11 C -0.182 4.182 12 C 0.307 3.693 13 O -0.451 6.451 14 N -0.363 5.363 15 C -0.022 4.022 16 C 0.047 3.953 17 H 0.117 0.883 18 O -0.370 6.370 19 C -0.006 4.006 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.618 5.618 25 Si 0.803 3.197 26 H -0.190 1.190 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.198 0.802 35 H 0.217 0.783 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.252 0.748 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.234 0.766 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.753 -7.089 -21.916 27.905 hybrid contribution -0.295 0.883 1.807 2.033 sum 15.458 -6.205 -20.109 26.112 Atomic orbital electron populations 1.21700 0.93357 1.03197 1.01731 1.20081 0.96869 0.86483 1.04610 1.23670 1.04039 0.97482 0.81450 1.70203 1.19531 1.05544 1.29604 1.22650 1.07320 0.96247 0.93987 1.23057 1.08181 0.90300 0.96626 1.45658 1.48495 1.11731 1.07026 1.21138 0.97370 0.99752 0.77073 0.87575 1.22203 0.94364 1.03226 1.01950 1.21936 1.02020 1.02126 0.92150 1.20561 0.78267 0.83160 0.87308 1.90704 1.50342 1.26888 1.77162 1.45809 1.45612 1.31037 1.13810 1.21830 0.99500 0.97991 0.82865 1.22094 0.96334 0.82344 0.94491 0.88338 1.86564 1.43870 1.27865 1.78653 1.21430 0.91815 0.94720 0.92633 1.42434 1.44008 1.37937 1.13969 1.19681 1.15054 1.11709 0.91418 0.90510 1.25600 1.00146 0.98574 1.02582 1.69835 1.30413 1.23015 1.38570 0.85067 0.77478 0.77371 0.79781 1.18956 1.22064 1.22071 0.93003 0.89991 0.93114 0.88622 0.89248 0.80179 0.78340 0.89737 0.92265 0.91010 0.85799 0.87060 0.74826 0.90540 0.90606 0.76584 0.94888 0.95086 0.79158 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.90 71.98 0.71 -1.07 16 2 C -0.04 -0.58 6.08 29.85 0.18 -0.40 16 3 C 0.20 3.70 7.16 138.12 0.99 4.69 16 4 N -0.53 -12.20 11.25 -188.14 -2.12 -14.31 16 5 C -0.06 -1.02 11.87 83.52 0.99 -0.02 16 6 C -0.05 -0.70 10.70 83.09 0.89 0.19 16 7 N -0.45 -6.85 2.61 -491.90 -1.28 -8.13 16 8 C 0.15 1.98 2.64 44.99 0.12 2.10 16 9 H 0.11 1.54 6.48 -2.39 -0.02 1.52 16 10 C -0.16 -2.15 9.00 71.98 0.65 -1.50 16 11 C -0.14 -1.57 5.18 29.85 0.15 -1.42 16 12 C 0.52 8.84 7.55 87.66 0.66 9.50 16 13 O -0.57 -13.47 13.97 -3.04 -0.04 -13.51 16 14 N -0.71 -11.83 5.45 -463.05 -2.52 -14.35 16 15 C 0.10 2.14 5.34 86.38 0.46 2.60 16 16 C 0.11 2.85 3.09 30.59 0.09 2.94 16 17 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 18 O -0.56 -15.30 13.03 -148.98 -1.94 -17.24 16 19 C 0.12 4.31 5.90 86.38 0.51 4.82 16 20 N -0.74 -36.15 5.55 -343.44 -1.91 -38.05 16 21 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 25 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.01 7.08 -2.38 -0.02 1.00 16 34 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.08 1.43 5.95 -2.39 -0.01 1.42 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.78 7.96 -2.39 -0.02 0.77 16 39 H 0.12 0.91 8.08 -2.39 -0.02 0.89 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.42 5.76 8.35 -92.72 -0.77 4.98 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.39 8.33 9.05 -74.06 -0.67 7.66 16 45 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 47 H 0.38 19.95 7.67 -92.71 -0.71 19.24 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -73.66 398.08 -0.96 -74.62 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.17 Total: 36.08 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 7.72 Total: 5.91 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -7.54 Total: -133.34 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.98 Total: -30.75 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.66 -0.96 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.076 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds