Wall clock time and date at job start Fri Apr 10 2020 18:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.47141 * 2 1 4 4 N 1.30491 * 125.64993 * 269.95596 * 3 2 1 5 5 C 1.34130 * 109.26048 * 180.02562 * 4 3 2 6 6 C 1.34673 * 108.01349 * 359.73137 * 5 4 3 7 7 N 1.35040 * 125.64823 * 89.99877 * 3 2 1 8 8 C 1.46498 * 126.40192 * 359.96801 * 7 3 2 9 9 H 1.09006 * 109.46805 * 359.97438 * 8 7 3 10 10 C 1.52999 * 109.47563 * 119.99233 * 8 7 3 11 11 C 1.53002 * 109.47242 * 239.99825 * 8 7 3 12 12 C 1.50695 * 109.47004 * 174.99767 * 11 8 7 13 13 O 1.21274 * 120.00413 * 0.27039 * 12 11 8 14 14 N 1.34784 * 119.99635 * 179.97438 * 12 11 8 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.47110 * 304.99985 * 16 15 14 18 18 O 1.42895 * 109.47262 * 65.00081 * 16 15 14 19 19 C 1.53001 * 109.47148 * 184.99978 * 16 15 14 20 20 N 1.46506 * 109.47114 * 179.97438 * 19 16 15 21 21 C 1.36939 * 120.00021 * 179.97438 * 20 19 16 22 22 H 1.07996 * 119.99586 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00031 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00042 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00175 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47470 * 59.99661 * 25 23 21 27 27 H 1.48505 * 109.47322 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46868 * 299.99670 * 25 23 21 29 29 H 1.09001 * 109.46856 * 300.00451 * 1 2 3 30 30 H 1.09005 * 109.47117 * 59.99794 * 1 2 3 31 31 H 1.08991 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46856 * 239.99549 * 2 1 3 33 33 H 1.09005 * 109.46751 * 119.99808 * 2 1 3 34 34 H 1.07991 * 125.99075 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.58914 * 180.27782 * 6 5 4 36 36 H 1.08997 * 109.47332 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47531 * 300.00924 * 10 8 7 38 38 H 1.09006 * 109.46731 * 60.00358 * 10 8 7 39 39 H 1.09005 * 109.47089 * 54.99515 * 11 8 7 40 40 H 1.09002 * 109.46787 * 294.99857 * 11 8 7 41 41 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 42 42 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 43 43 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 44 44 H 0.96699 * 114.00430 * 59.99826 * 18 16 15 45 45 H 1.08996 * 109.47633 * 299.99867 * 19 16 15 46 46 H 1.08999 * 109.47230 * 59.99896 * 19 16 15 47 47 H 0.97003 * 119.99472 * 0.02562 * 20 19 16 48 48 H 0.96996 * 120.00419 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2867 2.1376 -1.0604 5 6 2.7159 3.3507 -0.6819 6 6 2.7223 3.3889 0.6643 7 7 2.2947 2.1629 1.0974 8 6 2.1436 1.7374 2.4910 9 1 1.7794 0.7104 2.5199 10 6 3.4975 1.8190 3.1990 11 6 1.1423 2.6531 3.1981 12 6 0.8938 2.1427 4.5940 13 8 1.4652 1.1477 4.9866 14 7 0.0409 2.7955 5.4083 15 6 -0.2012 2.2991 6.7652 16 6 -1.2023 3.2148 7.4722 17 1 -0.8383 4.2419 7.4437 18 8 -2.4667 3.1391 6.8108 19 6 -1.3607 2.7701 8.9276 20 7 -2.3189 3.6474 9.6048 21 6 -2.6230 3.4403 10.9239 22 1 -2.1562 2.6306 11.4650 23 6 -3.5313 4.2712 11.5654 24 7 -4.1005 5.2577 10.9057 25 14 -3.9457 3.9893 13.3648 26 1 -2.7113 4.1086 14.1817 27 1 -4.9345 5.0039 13.8100 28 1 -4.5213 2.6307 13.5332 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.0013 4.1571 -1.3411 35 1 3.0119 4.2253 1.2832 36 1 3.3849 1.5029 4.2360 37 1 4.2108 1.1667 2.6952 38 1 3.8613 2.8461 3.1701 39 1 0.2045 2.6636 2.6427 40 1 1.5467 3.6641 3.2475 41 1 -0.4132 3.5936 5.0956 42 1 -0.6062 1.2883 6.7154 43 1 0.7366 2.2878 7.3207 44 1 -2.8514 2.2520 6.7978 45 1 -1.7247 1.7431 8.9562 46 1 -0.3962 2.8278 9.4322 47 1 -2.7384 4.3744 9.1186 48 1 -4.7355 5.8381 11.3538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699046563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:13 Heat of formation + Delta-G solvation = -27.631944 kcal Electronic energy + Delta-G solvation = -27072.990755 eV Core-core repulsion = 23163.972134 eV Total energy + Delta-G solvation = -3909.018621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49689 -40.17545 -37.86362 -36.02495 -34.55768 -34.14000 -34.07842 -31.51759 -31.16307 -29.61163 -28.90524 -28.08898 -25.40068 -24.24691 -23.45405 -22.59485 -21.56960 -21.37371 -20.39709 -19.58161 -17.93452 -17.24145 -17.08354 -16.49664 -16.21189 -15.80287 -15.57709 -15.26852 -15.06998 -14.53430 -14.50558 -14.21444 -14.01042 -13.78502 -13.73454 -13.57651 -13.26402 -13.05463 -12.91411 -12.62550 -12.46860 -12.20514 -11.99728 -11.95797 -11.87968 -11.64819 -11.42592 -11.01502 -10.85179 -10.73233 -10.37864 -10.25651 -10.12573 -9.92230 -9.85715 -9.57776 -9.30200 -8.95860 -8.62775 -7.00482 -5.81579 -3.11827 1.75230 2.27337 2.31409 2.89834 2.99821 3.40168 3.44589 3.45781 3.97998 4.08237 4.24154 4.35811 4.47015 4.51294 4.61179 4.66464 4.76241 4.81564 4.89241 4.93458 5.01565 5.04995 5.12756 5.23963 5.25410 5.40781 5.43908 5.48601 5.50648 5.51098 5.64895 5.65425 5.77961 5.82830 5.84004 6.06683 6.10728 6.21855 6.41924 6.50880 6.57928 6.90494 7.20919 7.62365 7.82832 7.85954 7.91325 8.36431 9.48101 10.03923 10.39677 11.40550 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.001845 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.821040 B =15173.210645 C =15225.111825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.210 3.790 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.057 4.057 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.518 3.482 13 O -0.541 6.541 14 N -0.717 5.717 15 C 0.089 3.911 16 C 0.089 3.911 17 H 0.104 0.896 18 O -0.552 6.552 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.246 4.246 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.909 3.091 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.406 0.594 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.580 -6.976 -22.093 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.193 4.193 12 C 0.303 3.697 13 O -0.419 6.419 14 N -0.368 5.368 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.122 0.878 18 O -0.357 6.357 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.221 0.779 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.224 0.776 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.979 -7.401 -22.370 27.397 hybrid contribution -0.539 0.464 1.713 1.855 sum 13.440 -6.937 -20.657 25.602 Atomic orbital electron populations 1.21745 0.93797 1.02458 1.02519 1.19996 0.96554 0.87451 1.04027 1.23287 1.03954 0.96685 0.81344 1.70240 1.18258 1.04340 1.28261 1.22271 1.06506 0.96222 0.92778 1.22620 1.09599 0.89944 0.96761 1.45609 1.48844 1.11710 1.07029 1.21156 0.97191 0.99738 0.77530 0.87081 1.22289 0.94408 1.02656 1.03024 1.21997 1.01641 1.01479 0.94208 1.20192 0.79102 0.83806 0.86617 1.90700 1.49085 1.25732 1.76346 1.45933 1.45375 1.30847 1.14669 1.22157 1.00641 0.98683 0.82024 1.22392 0.82902 0.99777 0.92057 0.87792 1.86579 1.34993 1.35306 1.78814 1.21188 0.94556 0.94633 0.89822 1.42220 1.49717 1.35493 1.09620 1.19164 1.20167 1.11512 0.86888 0.91252 1.24770 0.99664 0.98023 0.98349 1.69663 1.32451 1.19701 1.35945 0.86246 0.77787 0.77182 0.84801 1.21215 1.21615 1.21218 0.92867 0.91798 0.91468 0.88704 0.90363 0.81470 0.81159 0.88319 0.91885 0.92175 0.88017 0.87929 0.75861 0.90895 0.90256 0.77886 0.95951 0.95397 0.77640 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.04 -0.30 6.08 -27.88 -0.17 -0.47 16 3 C 0.21 2.06 7.16 -155.42 -1.11 0.95 16 4 N -0.49 -5.75 11.25 -10.82 -0.12 -5.87 16 5 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 6 C -0.06 -0.46 10.70 -16.56 -0.18 -0.64 16 7 N -0.45 -3.83 2.61 -106.83 -0.28 -4.10 16 8 C 0.15 1.12 2.64 -67.93 -0.18 0.94 16 9 H 0.11 0.89 6.49 -51.93 -0.34 0.55 16 10 C -0.17 -1.27 9.00 37.16 0.33 -0.94 16 11 C -0.15 -1.05 5.18 -27.88 -0.14 -1.19 16 12 C 0.52 4.97 7.55 -10.98 -0.08 4.88 16 13 O -0.54 -6.81 13.96 5.56 0.08 -6.73 16 14 N -0.72 -6.78 5.50 -60.30 -0.33 -7.12 16 15 C 0.09 1.01 5.31 -4.05 -0.02 0.99 16 16 C 0.09 1.24 3.09 -26.73 -0.08 1.16 16 17 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 18 O -0.55 -8.13 13.03 -35.23 -0.46 -8.59 16 19 C 0.13 2.33 5.92 -4.04 -0.02 2.31 16 20 N -0.73 -17.83 5.49 -59.91 -0.33 -18.16 16 21 C -0.25 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.48 7.08 -51.93 -0.37 0.11 16 34 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.10 0.91 5.94 -51.93 -0.31 0.60 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 7.96 -51.93 -0.41 0.00 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.41 3.31 8.47 -40.82 -0.35 2.97 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.37 4.58 9.05 45.56 0.41 4.99 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.39 10.27 7.54 -40.82 -0.31 9.96 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -34.35 398.07 -8.62 -42.97 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.13 Total: 12.20 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.75 Total: -0.50 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.34 Total: -62.45 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.38 Total: -15.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.35 -8.62 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.340 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds