Wall clock time and date at job start Fri Apr 10 2020 18:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.47141 * 2 1 4 4 N 1.30491 * 125.64993 * 269.95596 * 3 2 1 5 5 C 1.34130 * 109.26048 * 180.02562 * 4 3 2 6 6 C 1.34673 * 108.01349 * 359.73137 * 5 4 3 7 7 N 1.35040 * 125.64823 * 89.99877 * 3 2 1 8 8 C 1.46498 * 126.40192 * 359.96801 * 7 3 2 9 9 H 1.09006 * 109.46805 * 359.97438 * 8 7 3 10 10 C 1.52999 * 109.47563 * 119.99233 * 8 7 3 11 11 C 1.53002 * 109.47242 * 239.99825 * 8 7 3 12 12 C 1.50695 * 109.47004 * 174.99767 * 11 8 7 13 13 O 1.21274 * 120.00413 * 0.27039 * 12 11 8 14 14 N 1.34784 * 119.99635 * 179.97438 * 12 11 8 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.47110 * 304.99985 * 16 15 14 18 18 O 1.42895 * 109.47262 * 65.00081 * 16 15 14 19 19 C 1.53001 * 109.47148 * 184.99978 * 16 15 14 20 20 N 1.46506 * 109.47114 * 179.97438 * 19 16 15 21 21 C 1.36939 * 120.00021 * 179.97438 * 20 19 16 22 22 H 1.07996 * 119.99586 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00031 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00042 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00175 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47470 * 59.99661 * 25 23 21 27 27 H 1.48505 * 109.47322 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46868 * 299.99670 * 25 23 21 29 29 H 1.09001 * 109.46856 * 300.00451 * 1 2 3 30 30 H 1.09005 * 109.47117 * 59.99794 * 1 2 3 31 31 H 1.08991 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46856 * 239.99549 * 2 1 3 33 33 H 1.09005 * 109.46751 * 119.99808 * 2 1 3 34 34 H 1.07991 * 125.99075 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.58914 * 180.27782 * 6 5 4 36 36 H 1.08997 * 109.47332 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47531 * 300.00924 * 10 8 7 38 38 H 1.09006 * 109.46731 * 60.00358 * 10 8 7 39 39 H 1.09005 * 109.47089 * 54.99515 * 11 8 7 40 40 H 1.09002 * 109.46787 * 294.99857 * 11 8 7 41 41 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 42 42 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 43 43 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 44 44 H 0.96699 * 114.00430 * 59.99826 * 18 16 15 45 45 H 1.08996 * 109.47633 * 299.99867 * 19 16 15 46 46 H 1.08999 * 109.47230 * 59.99896 * 19 16 15 47 47 H 0.97003 * 119.99472 * 0.02562 * 20 19 16 48 48 H 0.96996 * 120.00419 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2867 2.1376 -1.0604 5 6 2.7159 3.3507 -0.6819 6 6 2.7223 3.3889 0.6643 7 7 2.2947 2.1629 1.0974 8 6 2.1436 1.7374 2.4910 9 1 1.7794 0.7104 2.5199 10 6 3.4975 1.8190 3.1990 11 6 1.1423 2.6531 3.1981 12 6 0.8938 2.1427 4.5940 13 8 1.4652 1.1477 4.9866 14 7 0.0409 2.7955 5.4083 15 6 -0.2012 2.2991 6.7652 16 6 -1.2023 3.2148 7.4722 17 1 -0.8383 4.2419 7.4437 18 8 -2.4667 3.1391 6.8108 19 6 -1.3607 2.7701 8.9276 20 7 -2.3189 3.6474 9.6048 21 6 -2.6230 3.4403 10.9239 22 1 -2.1562 2.6306 11.4650 23 6 -3.5313 4.2712 11.5654 24 7 -4.1005 5.2577 10.9057 25 14 -3.9457 3.9893 13.3648 26 1 -2.7113 4.1086 14.1817 27 1 -4.9345 5.0039 13.8100 28 1 -4.5213 2.6307 13.5332 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.0013 4.1571 -1.3411 35 1 3.0119 4.2253 1.2832 36 1 3.3849 1.5029 4.2360 37 1 4.2108 1.1667 2.6952 38 1 3.8613 2.8461 3.1701 39 1 0.2045 2.6636 2.6427 40 1 1.5467 3.6641 3.2475 41 1 -0.4132 3.5936 5.0956 42 1 -0.6062 1.2883 6.7154 43 1 0.7366 2.2878 7.3207 44 1 -2.8514 2.2520 6.7978 45 1 -1.7247 1.7431 8.9562 46 1 -0.3962 2.8278 9.4322 47 1 -2.7384 4.3744 9.1186 48 1 -4.7355 5.8381 11.3538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699046563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:12 Heat of formation + Delta-G solvation = -53.219290 kcal Electronic energy + Delta-G solvation = -27074.100306 eV Core-core repulsion = 23163.972134 eV Total energy + Delta-G solvation = -3910.128172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.15673 -40.98808 -39.03165 -36.74142 -36.04789 -35.30130 -34.70511 -33.20738 -31.99831 -30.76976 -29.54376 -28.99613 -26.86756 -24.93863 -24.51010 -23.79639 -22.76369 -22.12176 -21.21665 -20.21828 -19.25282 -18.57706 -18.04770 -17.35663 -17.18666 -16.63512 -16.49894 -16.36697 -16.09944 -15.74067 -15.45957 -15.14029 -14.98162 -14.84336 -14.62598 -14.38680 -14.25296 -14.14603 -13.88567 -13.84453 -13.34562 -13.18654 -12.97762 -12.80566 -12.72109 -12.53904 -12.52020 -12.21231 -12.20962 -11.98242 -11.97256 -11.80791 -11.22203 -11.00397 -10.95509 -10.77619 -10.57377 -10.13686 -9.28245 -9.01588 -7.95460 -5.24930 1.10360 1.47522 1.50247 1.54163 1.56500 1.63296 2.19612 2.23317 2.56072 3.35569 3.38430 3.45523 3.50000 3.60016 3.65578 3.75747 3.91473 4.03430 4.08076 4.20686 4.23704 4.35181 4.40364 4.42013 4.47575 4.50220 4.62989 4.66718 4.67742 4.73012 4.82747 4.86700 4.93346 4.98500 5.07764 5.14562 5.21495 5.28160 5.36632 5.44091 5.47633 5.87504 6.25634 6.26051 6.46496 6.79231 7.15567 7.18427 7.32986 8.08823 8.31416 9.27393 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.001845 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.821040 B =15173.210645 C =15225.111825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.106 0.894 10 C -0.160 4.160 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.571 6.571 14 N -0.711 5.711 15 C 0.103 3.897 16 C 0.107 3.893 17 H 0.101 0.899 18 O -0.564 6.564 19 C 0.121 3.879 20 N -0.740 5.740 21 C -0.249 4.249 22 H 0.076 0.924 23 C -0.076 4.076 24 N -0.967 5.967 25 Si 0.974 3.026 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.385 0.615 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.377 0.623 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.253 -7.342 -22.052 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.124 0.876 10 C -0.218 4.218 11 C -0.182 4.182 12 C 0.307 3.693 13 O -0.451 6.451 14 N -0.363 5.363 15 C -0.022 4.022 16 C 0.047 3.953 17 H 0.119 0.881 18 O -0.370 6.370 19 C -0.007 4.007 20 N -0.383 5.383 21 C -0.381 4.381 22 H 0.094 0.906 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.803 3.197 26 H -0.203 1.203 27 H -0.222 1.222 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.233 0.767 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.679 -7.798 -22.347 27.851 hybrid contribution -0.685 0.528 1.645 1.858 sum 13.994 -7.270 -20.703 26.025 Atomic orbital electron populations 1.21700 0.93337 1.03203 1.01733 1.20084 0.96885 0.86466 1.04609 1.23672 1.04018 0.97487 0.81444 1.70204 1.19537 1.05539 1.29601 1.22651 1.07316 0.96251 0.93983 1.23057 1.08195 0.90307 0.96628 1.45656 1.48502 1.11729 1.07027 1.21135 0.97344 0.99761 0.77071 0.87560 1.22208 0.94388 1.03228 1.01964 1.21939 1.02019 1.02123 0.92167 1.20560 0.78256 0.83158 0.87319 1.90701 1.50174 1.27114 1.77087 1.45828 1.45463 1.31135 1.13882 1.21841 0.99579 0.97892 0.82846 1.22108 0.83447 1.00062 0.89678 0.88085 1.86559 1.35438 1.36471 1.78556 1.21419 0.93139 0.93893 0.92205 1.42409 1.50717 1.36108 1.09077 1.19603 1.19260 1.10944 0.88307 0.90578 1.25598 1.00362 0.98317 1.02551 1.69822 1.33514 1.20942 1.37496 0.85203 0.77476 0.77007 0.79999 1.20329 1.22224 1.20370 0.93119 0.93005 0.89969 0.88622 0.89248 0.80185 0.78352 0.89729 0.92250 0.91033 0.87048 0.85796 0.74856 0.90796 0.90356 0.76654 0.95214 0.94872 0.79072 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.90 71.98 0.71 -1.05 16 2 C -0.04 -0.57 6.08 29.85 0.18 -0.39 16 3 C 0.20 3.70 7.16 138.13 0.99 4.69 16 4 N -0.53 -12.19 11.25 -188.14 -2.12 -14.31 16 5 C -0.06 -1.02 11.87 83.52 0.99 -0.02 16 6 C -0.05 -0.71 10.70 83.09 0.89 0.18 16 7 N -0.45 -6.85 2.61 -491.90 -1.28 -8.13 16 8 C 0.15 1.98 2.64 44.99 0.12 2.10 16 9 H 0.11 1.54 6.49 -2.38 -0.02 1.52 16 10 C -0.16 -2.18 9.00 71.98 0.65 -1.53 16 11 C -0.14 -1.57 5.18 29.85 0.15 -1.42 16 12 C 0.52 8.85 7.55 87.65 0.66 9.51 16 13 O -0.57 -13.48 13.96 -3.01 -0.04 -13.52 16 14 N -0.71 -11.84 5.50 -463.07 -2.55 -14.39 16 15 C 0.10 2.15 5.31 86.38 0.46 2.61 16 16 C 0.11 2.84 3.09 30.59 0.09 2.93 16 17 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 18 O -0.56 -15.81 13.03 -148.98 -1.94 -17.75 16 19 C 0.12 4.30 5.92 86.38 0.51 4.81 16 20 N -0.74 -36.14 5.49 -343.45 -1.89 -38.02 16 21 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 22 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 24 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 25 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.01 7.08 -2.38 -0.02 0.99 16 34 H 0.18 2.54 8.06 -2.92 -0.02 2.51 16 35 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.08 1.45 5.94 -2.39 -0.01 1.44 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.79 7.96 -2.38 -0.02 0.77 16 39 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.12 0.90 8.08 -2.39 -0.02 0.88 16 41 H 0.41 5.70 8.47 -92.71 -0.79 4.91 16 42 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.38 20.01 7.54 -92.71 -0.70 19.31 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -73.60 398.07 -0.96 -74.57 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -1.17 Total: 36.78 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 7.72 Total: 5.81 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -7.55 Total: -133.30 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.98 Total: -31.27 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.60 -0.96 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.348 kcal (2) G-P(sol) polarization free energy of solvation -73.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds