Wall clock time and date at job start Fri Apr 10 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30496 * 125.64577 * 90.02138 * 3 2 1 5 5 C 1.34131 * 109.25387 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.02144 * 0.02562 * 5 4 3 7 7 N 1.35037 * 125.65176 * 269.72246 * 3 2 1 8 8 C 1.46504 * 126.39704 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47036 * 0.02562 * 8 7 3 10 10 C 1.52995 * 109.47244 * 240.00067 * 8 7 3 11 11 C 1.53001 * 109.47018 * 120.00220 * 8 7 3 12 12 C 1.50699 * 109.47192 * 185.00096 * 11 8 7 13 13 O 1.21286 * 119.99837 * 359.97438 * 12 11 8 14 14 N 1.34779 * 120.00031 * 179.97438 * 12 11 8 15 15 C 1.46501 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47014 * 180.02562 * 15 14 12 17 17 H 1.09007 * 109.47505 * 59.99765 * 16 15 14 18 18 O 1.42901 * 109.47236 * 299.99734 * 16 15 14 19 19 C 1.53008 * 109.47080 * 179.97438 * 16 15 14 20 20 N 1.46497 * 109.47192 * 184.99918 * 19 16 15 21 21 C 1.36932 * 120.00175 * 180.02562 * 20 19 16 22 22 H 1.07998 * 120.00237 * 359.97438 * 21 20 19 23 23 C 1.38818 * 120.00335 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99528 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47325 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46847 * 120.00317 * 25 23 21 28 28 H 1.48500 * 109.47373 * 239.99761 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08004 * 125.98782 * 179.97438 * 5 4 3 35 35 H 1.07997 * 126.59386 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47576 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47296 * 300.00064 * 10 8 7 38 38 H 1.09000 * 109.47138 * 59.99854 * 10 8 7 39 39 H 1.09000 * 109.47377 * 304.99854 * 11 8 7 40 40 H 1.08997 * 109.47364 * 65.00134 * 11 8 7 41 41 H 0.96999 * 120.00005 * 0.02562 * 14 12 11 42 42 H 1.09009 * 109.46935 * 300.00054 * 15 14 12 43 43 H 1.08996 * 109.47598 * 59.99504 * 15 14 12 44 44 H 0.96705 * 113.99534 * 300.00270 * 18 16 15 45 45 H 1.08997 * 109.46872 * 304.99675 * 19 16 15 46 46 H 1.08993 * 109.47040 * 65.00097 * 19 16 15 47 47 H 0.97008 * 119.99904 * 0.02562 * 20 19 16 48 48 H 0.97003 * 119.99732 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2862 2.1377 1.0605 5 6 2.7145 3.3512 0.6819 6 6 2.7259 3.3877 -0.6642 7 7 2.2997 2.1611 -1.0973 8 6 2.1561 1.7330 -2.4910 9 1 1.7930 0.7057 -2.5199 10 6 3.5135 1.8145 -3.1920 11 6 1.1577 2.6466 -3.2048 12 6 0.9167 2.1335 -4.6011 13 8 1.4877 1.1356 -4.9875 14 7 0.0667 2.7836 -5.4206 15 6 -0.1680 2.2845 -6.7778 16 6 -1.1662 3.1981 -7.4916 17 1 -0.7622 4.2093 -7.5411 18 8 -2.3993 3.2127 -6.7696 19 6 -1.4108 2.6772 -8.9093 20 7 -2.2724 3.6157 -9.6325 21 6 -2.6300 3.3573 -10.9288 22 1 -2.2767 2.4618 -11.4182 23 6 -3.4469 4.2463 -11.6140 24 7 -3.8780 5.3374 -11.0174 25 14 -3.9341 3.8941 -13.3825 26 1 -3.3233 2.6126 -13.8184 27 1 -5.4128 3.7950 -13.4782 28 1 -3.4543 4.9943 -14.2568 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9994 4.1578 1.3412 35 1 3.0198 4.2226 -1.2831 36 1 3.4066 1.4964 -4.2291 37 1 3.8763 2.8420 -3.1632 38 1 4.2248 1.1637 -2.6835 39 1 0.2170 2.6573 -2.6543 40 1 1.5615 3.6579 -3.2540 41 1 -0.3896 3.5819 -5.1117 42 1 0.7726 2.2738 -7.3287 43 1 -0.5715 1.2731 -6.7284 44 1 -2.8164 2.3442 -6.6861 45 1 -0.4585 2.5824 -9.4309 46 1 -1.8965 1.7027 -8.8595 47 1 -2.5895 4.4203 -9.1931 48 1 -4.4484 5.9589 -11.4962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699046564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:15 Heat of formation + Delta-G solvation = -53.543361 kcal Electronic energy + Delta-G solvation = -27075.400551 eV Core-core repulsion = 23165.258327 eV Total energy + Delta-G solvation = -3910.142224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.15592 -40.98713 -39.03246 -36.73901 -36.07003 -35.28418 -34.70423 -33.22350 -31.99715 -30.76993 -29.54383 -28.99887 -26.87182 -24.93718 -24.51134 -23.79902 -22.76824 -22.11965 -21.21869 -20.21675 -19.25940 -18.57740 -18.05131 -17.34815 -17.18958 -16.66018 -16.50600 -16.34784 -16.09483 -15.74637 -15.46250 -15.13887 -14.98292 -14.84107 -14.61972 -14.38465 -14.25953 -14.16228 -13.88621 -13.83804 -13.35183 -13.18617 -12.98410 -12.82102 -12.77995 -12.53774 -12.51912 -12.21216 -12.12747 -11.97258 -11.96728 -11.81879 -11.21699 -11.02266 -10.96708 -10.78349 -10.57403 -10.13537 -9.28243 -9.02232 -7.96501 -5.25739 1.10436 1.47440 1.47851 1.54305 1.57976 1.63160 2.19574 2.23212 2.55426 3.35178 3.38529 3.46181 3.50473 3.59154 3.65620 3.75858 3.91478 4.01939 4.08101 4.21082 4.23725 4.35336 4.40402 4.41467 4.47645 4.50303 4.63002 4.66759 4.67770 4.73034 4.82706 4.86723 4.93563 4.98630 5.07890 5.14604 5.21501 5.28284 5.36276 5.44122 5.47888 5.87492 6.25098 6.26079 6.46922 6.79236 7.15823 7.18445 7.32223 8.07778 8.30069 9.26864 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028782 B = 0.001845 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.585294 B =15172.640449 C =15215.239471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.107 0.893 10 C -0.160 4.160 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.571 6.571 14 N -0.711 5.711 15 C 0.103 3.897 16 C 0.107 3.893 17 H 0.100 0.900 18 O -0.563 6.563 19 C 0.121 3.879 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.265 1.265 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.199 0.801 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.034 0.966 46 H 0.031 0.969 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -7.636 22.401 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.125 0.875 10 C -0.218 4.218 11 C -0.182 4.182 12 C 0.307 3.693 13 O -0.451 6.451 14 N -0.363 5.363 15 C -0.022 4.022 16 C 0.047 3.953 17 H 0.118 0.882 18 O -0.370 6.370 19 C -0.006 4.006 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.618 5.618 25 Si 0.803 3.197 26 H -0.190 1.190 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.252 0.748 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.234 0.766 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.183 -8.125 22.664 27.943 hybrid contribution -0.703 0.572 -1.625 1.860 sum 13.480 -7.553 21.039 26.104 Atomic orbital electron populations 1.21699 0.93322 1.03204 1.01740 1.20084 0.96904 0.86453 1.04604 1.23676 1.03986 0.97510 0.81444 1.70209 1.19570 1.05507 1.29595 1.22652 1.07327 0.96239 0.93981 1.23055 1.08224 0.90287 0.96628 1.45656 1.48482 1.11743 1.07030 1.21133 0.97363 0.99752 0.77055 0.87537 1.22207 0.94359 1.03226 1.01999 1.21936 1.02079 1.02107 0.92116 1.20562 0.78236 0.83204 0.87297 1.90705 1.50111 1.26916 1.77366 1.45809 1.45532 1.31199 1.13725 1.21829 0.99600 0.97913 0.82847 1.22104 0.84064 0.99954 0.89155 0.88235 1.86564 1.37356 1.36842 1.76242 1.21429 0.94130 0.93101 0.91940 1.42436 1.58904 1.25395 1.11611 1.19679 1.23552 1.04674 0.89963 0.90515 1.25600 1.01345 0.97311 1.02643 1.69834 1.40307 1.13596 1.38088 0.85067 0.77228 0.77535 0.79868 1.18959 1.22095 1.22040 0.93007 0.93100 0.89967 0.89251 0.88631 0.80188 0.78366 0.89744 0.91040 0.92246 0.87018 0.85840 0.74821 0.90421 0.90730 0.76610 0.94832 0.95144 0.79154 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.04 -0.57 6.08 29.85 0.18 -0.39 16 3 C 0.20 3.70 7.16 138.13 0.99 4.69 16 4 N -0.53 -12.18 11.25 -188.13 -2.12 -14.30 16 5 C -0.06 -1.02 11.87 83.52 0.99 -0.02 16 6 C -0.05 -0.71 10.70 83.09 0.89 0.18 16 7 N -0.45 -6.85 2.61 -491.91 -1.28 -8.13 16 8 C 0.15 1.98 2.64 44.99 0.12 2.10 16 9 H 0.11 1.53 6.47 -2.39 -0.02 1.52 16 10 C -0.16 -2.18 8.99 71.98 0.65 -1.53 16 11 C -0.14 -1.57 5.18 29.85 0.15 -1.42 16 12 C 0.52 8.84 7.55 87.66 0.66 9.50 16 13 O -0.57 -13.47 13.97 -3.05 -0.04 -13.51 16 14 N -0.71 -11.82 5.45 -463.06 -2.52 -14.34 16 15 C 0.10 2.14 5.34 86.38 0.46 2.60 16 16 C 0.11 2.84 3.08 30.59 0.09 2.94 16 17 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 18 O -0.56 -15.46 13.03 -148.98 -1.94 -17.40 16 19 C 0.12 4.31 5.90 86.38 0.51 4.82 16 20 N -0.74 -36.14 5.55 -343.46 -1.91 -38.04 16 21 C -0.25 -13.47 9.99 84.04 0.84 -12.63 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 25 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.00 7.07 -2.39 -0.02 0.98 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.08 1.45 5.95 -2.39 -0.01 1.43 16 37 H 0.07 0.79 7.96 -2.39 -0.02 0.78 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 0.90 8.08 -2.39 -0.02 0.88 16 41 H 0.42 5.75 8.35 -92.71 -0.77 4.98 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.38 8.48 9.05 -74.05 -0.67 7.81 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.38 19.94 7.67 -92.70 -0.71 19.23 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -73.66 398.07 -0.96 -74.61 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -1.17 Total: 36.20 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 7.72 Total: 5.91 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -7.54 Total: -133.28 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.98 Total: -30.91 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.66 -0.96 -74.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699046564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.072 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds