Wall clock time and date at job start Fri Apr 10 2020 18:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47516 * 305.00529 * 11 10 9 13 13 C 1.53003 * 109.46855 * 65.00328 * 11 10 9 14 14 C 1.52994 * 109.47381 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46782 * 299.99687 * 14 13 11 16 16 H 1.08996 * 109.47633 * 299.99897 * 15 14 13 17 17 C 1.53002 * 109.47251 * 179.97438 * 15 14 13 18 18 N 1.46509 * 109.46793 * 65.00032 * 17 15 14 19 19 C 1.34769 * 119.99767 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00317 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 17 22 22 H 1.09003 * 110.49365 * 40.70038 * 21 19 18 23 23 C 1.54107 * 110.54888 * 278.00316 * 21 19 18 24 24 N 1.47393 * 103.70273 * 241.44206 * 23 21 19 25 25 C 1.33947 * 109.20954 * 359.87965 * 24 23 21 26 26 O 1.21589 * 123.04360 * 180.02562 * 25 24 23 27 27 N 1.33951 * 113.91991 * 0.08045 * 25 24 23 28 28 C 1.53000 * 109.47144 * 60.00314 * 15 14 13 29 29 C 1.53001 * 109.47251 * 184.99980 * 11 10 9 30 30 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.09005 * 109.46613 * 299.99952 * 13 11 10 35 35 H 1.08993 * 109.47263 * 59.99595 * 13 11 10 36 36 H 1.08994 * 109.47276 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47318 * 59.99147 * 14 13 11 38 38 H 1.08997 * 109.47569 * 184.99962 * 17 15 14 39 39 H 1.08999 * 109.47267 * 305.00820 * 17 15 14 40 40 H 0.96993 * 119.99778 * 0.02562 * 18 17 15 41 41 H 1.08995 * 110.54676 * 359.97438 * 23 21 19 42 42 H 1.09001 * 110.55314 * 122.80727 * 23 21 19 43 43 H 0.96997 * 125.37924 * 179.97438 * 24 23 21 44 44 H 0.96994 * 125.41654 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47544 * 180.02562 * 28 15 14 46 46 H 1.08998 * 109.47892 * 59.99569 * 28 15 14 47 47 H 1.09006 * 109.47121 * 300.00388 * 29 11 10 48 48 H 1.08999 * 109.47230 * 60.00283 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3799 -4.7126 0.8421 13 6 0.2686 -4.8115 -1.3070 14 6 -0.7260 -5.9740 -1.3062 15 6 0.0344 -7.2956 -1.1802 16 1 0.7182 -7.4032 -2.0222 17 6 -0.9603 -8.4582 -1.1788 18 7 -1.6376 -8.5229 -2.4763 19 6 -2.5628 -9.4754 -2.7066 20 8 -2.8350 -10.2787 -1.8397 21 6 -3.2591 -9.5424 -4.0414 22 1 -2.5529 -9.3542 -4.8501 23 6 -4.4238 -8.5346 -4.0951 24 7 -5.6116 -9.3841 -4.2949 25 6 -5.2311 -10.6670 -4.3537 26 8 -6.0134 -11.5839 -4.5140 27 7 -3.9108 -10.8487 -4.2188 28 6 0.8295 -7.3039 0.1269 29 6 1.8247 -6.1411 0.1258 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6847 -3.7145 -0.8904 33 1 2.6848 -3.7145 0.8895 34 1 -0.2734 -3.8700 -1.3965 35 1 0.9524 -4.9185 -2.1490 36 1 -1.2922 -5.9684 -2.2376 37 1 -1.4098 -5.8666 -0.4642 38 1 -0.4274 -9.3921 -1.0002 39 1 -1.6979 -8.3043 -0.3912 40 1 -1.4196 -7.8807 -3.1697 41 1 -4.4987 -7.9862 -3.1561 42 1 -4.2972 -7.8476 -4.9318 43 1 -6.5241 -9.0644 -4.3729 44 1 -3.4568 -11.7056 -4.2352 45 1 1.3717 -8.2453 0.2165 46 1 0.1458 -7.1964 0.9689 47 1 2.5086 -6.2481 -0.7162 48 1 2.3912 -6.1470 1.0570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699979664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:27 Heat of formation + Delta-G solvation = -64.702419 kcal Electronic energy + Delta-G solvation = -27293.110349 eV Core-core repulsion = 23382.484232 eV Total energy + Delta-G solvation = -3910.626117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74674 -39.90699 -38.86283 -36.63377 -35.82741 -34.46592 -33.45545 -32.35519 -30.78389 -30.34951 -29.38588 -26.67502 -24.61624 -23.64624 -23.01681 -22.23174 -22.14949 -21.03575 -20.51051 -19.70495 -18.49428 -18.06561 -17.28270 -16.81973 -16.31731 -16.12479 -15.67836 -15.31341 -14.86761 -14.83694 -14.36938 -14.34273 -14.18637 -13.93092 -13.64914 -13.63622 -13.53356 -13.31336 -13.08498 -12.68994 -12.34751 -12.17265 -11.66399 -11.52175 -11.09932 -10.99043 -10.79884 -10.72794 -10.65886 -10.60900 -10.28150 -10.10544 -9.98609 -9.90050 -9.85272 -9.50088 -9.35903 -9.16146 -8.88843 -7.00460 -6.12091 -3.10943 1.95434 2.26719 2.53191 2.86746 3.49731 3.50351 3.53254 3.69415 3.70744 4.06601 4.25024 4.41156 4.55751 4.62442 4.66810 4.69429 4.87380 5.03588 5.08747 5.17751 5.19668 5.35218 5.42615 5.48667 5.51687 5.56891 5.59295 5.62460 5.88509 5.92598 5.96653 6.03398 6.11010 6.17047 6.21126 6.28063 6.43465 6.52547 6.57116 6.66865 6.74530 6.85380 6.87881 6.99643 7.67947 7.79639 8.18658 8.74479 9.22711 10.09007 10.24504 11.36629 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.002036 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.690691 B =13751.952055 C =14883.850670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.330 4.330 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.067 0.933 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.098 4.098 16 H 0.077 0.923 17 C 0.123 3.877 18 N -0.721 5.721 19 C 0.499 3.501 20 O -0.522 6.522 21 C 0.103 3.897 22 H 0.118 0.882 23 C 0.104 3.896 24 N -0.739 5.739 25 C 0.706 3.294 26 O -0.583 6.583 27 N -0.715 5.715 28 C -0.109 4.109 29 C -0.109 4.109 30 H 0.254 0.746 31 H 0.366 0.634 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.404 0.596 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.434 0.566 44 H 0.434 0.566 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -19.229 -9.233 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.114 4.114 12 H 0.086 0.914 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.117 4.117 16 H 0.096 0.904 17 C 0.000 4.000 18 N -0.374 5.374 19 C 0.282 3.718 20 O -0.397 6.397 21 C -0.008 4.008 22 H 0.135 0.865 23 C -0.022 4.022 24 N -0.402 5.402 25 C 0.405 3.595 26 O -0.460 6.460 27 N -0.377 5.377 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.239 0.761 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.276 0.724 44 H 0.277 0.723 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.149 -18.621 -8.668 20.954 hybrid contribution 0.114 -1.396 -0.245 1.422 sum -4.034 -20.017 -8.913 22.280 Atomic orbital electron populations 1.70889 1.06007 1.28294 1.53914 1.25767 0.97080 1.00983 1.00616 0.83243 0.74216 0.75633 0.75851 1.21033 1.22307 1.22297 1.20044 0.92018 0.85951 1.48078 0.91882 1.42386 1.04828 1.00989 1.90683 1.20624 0.93179 0.85065 0.97679 1.21345 0.97687 0.94504 0.97876 0.91424 1.21509 0.97601 0.97931 0.97579 1.21635 0.98008 0.93900 1.01554 1.21441 0.96555 0.94006 0.99661 0.90449 1.21532 0.95151 0.98935 0.84430 1.46038 1.40859 1.33004 1.17472 1.20754 0.80028 0.81516 0.89496 1.90777 1.63228 1.39928 1.45730 1.21862 0.96691 0.85695 0.96577 0.86481 1.22338 0.82890 0.92940 1.04035 1.45128 1.10031 1.05931 1.79148 1.15855 0.82731 0.83625 0.77319 1.91016 1.54279 1.43158 1.57585 1.44815 1.06575 1.08264 1.78070 1.21488 0.98046 0.98682 0.96461 1.21506 0.97472 0.93798 1.01963 0.93503 0.80024 0.96432 0.96520 0.91152 0.92245 0.92423 0.91791 0.91336 0.91167 0.76145 0.89285 0.88272 0.72423 0.72319 0.91958 0.91654 0.91986 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -28.88 13.70 55.49 0.76 -28.12 16 2 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 25.67 29.92 -169.99 -5.09 20.58 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.33 -9.26 9.99 -15.06 -0.15 -9.42 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -18.33 5.33 -59.91 -0.32 -18.65 16 10 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 11 C -0.10 -1.38 2.23 -90.62 -0.20 -1.59 16 12 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 13 C -0.11 -1.42 5.08 -26.73 -0.14 -1.56 16 14 C -0.11 -1.06 5.08 -26.73 -0.14 -1.20 16 15 C -0.10 -0.76 2.23 -90.62 -0.20 -0.96 16 16 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 17 C 0.12 0.94 5.06 -4.04 -0.02 0.92 16 18 N -0.72 -4.27 5.28 -60.29 -0.32 -4.59 16 19 C 0.50 3.89 6.94 -10.99 -0.08 3.81 16 20 O -0.52 -6.60 16.58 5.56 0.09 -6.51 16 21 C 0.10 0.52 4.16 -68.20 -0.28 0.24 16 22 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 23 C 0.10 0.43 7.72 -2.98 -0.02 0.41 16 24 N -0.74 -5.11 6.39 -64.46 -0.41 -5.52 16 25 C 0.71 7.49 8.92 -88.40 -0.79 6.71 16 26 O -0.58 -8.81 18.05 5.29 0.10 -8.71 16 27 N -0.71 -5.71 5.62 -59.32 -0.33 -6.05 16 28 C -0.11 -0.97 5.20 -26.70 -0.14 -1.11 16 29 C -0.11 -1.23 5.21 -26.70 -0.14 -1.37 16 30 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 31 H 0.37 9.15 5.68 -40.82 -0.23 8.92 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.12 7.18 -51.93 -0.37 0.75 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.43 7.18 -51.93 -0.37 0.06 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 1.36 7.65 -40.82 -0.31 1.05 16 41 H 0.09 0.37 7.72 -51.93 -0.40 -0.03 16 42 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.43 2.31 8.96 -40.82 -0.37 1.95 16 44 H 0.43 3.17 8.96 -40.82 -0.37 2.81 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -38.32 383.08 -9.99 -48.31 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.82 Total: 6.94 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.41 Total: -3.45 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.62 Total: -62.93 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.19 Total: -15.22 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.32 -9.99 -48.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699979664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.391 kcal (2) G-P(sol) polarization free energy of solvation -38.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds