Wall clock time and date at job start Fri Apr 10 2020 18:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47516 * 305.00529 * 11 10 9 13 13 C 1.53003 * 109.46855 * 65.00328 * 11 10 9 14 14 C 1.52994 * 109.47381 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46782 * 299.99687 * 14 13 11 16 16 H 1.08996 * 109.47633 * 299.99897 * 15 14 13 17 17 C 1.53002 * 109.47251 * 179.97438 * 15 14 13 18 18 N 1.46509 * 109.46793 * 65.00032 * 17 15 14 19 19 C 1.34769 * 119.99767 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00317 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 17 22 22 H 1.09003 * 110.49365 * 40.70038 * 21 19 18 23 23 C 1.54107 * 110.54888 * 278.00316 * 21 19 18 24 24 N 1.47393 * 103.70273 * 241.44206 * 23 21 19 25 25 C 1.33947 * 109.20954 * 359.87965 * 24 23 21 26 26 O 1.21589 * 123.04360 * 180.02562 * 25 24 23 27 27 N 1.33951 * 113.91991 * 0.08045 * 25 24 23 28 28 C 1.53000 * 109.47144 * 60.00314 * 15 14 13 29 29 C 1.53001 * 109.47251 * 184.99980 * 11 10 9 30 30 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.09005 * 109.46613 * 299.99952 * 13 11 10 35 35 H 1.08993 * 109.47263 * 59.99595 * 13 11 10 36 36 H 1.08994 * 109.47276 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47318 * 59.99147 * 14 13 11 38 38 H 1.08997 * 109.47569 * 184.99962 * 17 15 14 39 39 H 1.08999 * 109.47267 * 305.00820 * 17 15 14 40 40 H 0.96993 * 119.99778 * 0.02562 * 18 17 15 41 41 H 1.08995 * 110.54676 * 359.97438 * 23 21 19 42 42 H 1.09001 * 110.55314 * 122.80727 * 23 21 19 43 43 H 0.96997 * 125.37924 * 179.97438 * 24 23 21 44 44 H 0.96994 * 125.41654 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47544 * 180.02562 * 28 15 14 46 46 H 1.08998 * 109.47892 * 59.99569 * 28 15 14 47 47 H 1.09006 * 109.47121 * 300.00388 * 29 11 10 48 48 H 1.08999 * 109.47230 * 60.00283 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3799 -4.7126 0.8421 13 6 0.2686 -4.8115 -1.3070 14 6 -0.7260 -5.9740 -1.3062 15 6 0.0344 -7.2956 -1.1802 16 1 0.7182 -7.4032 -2.0222 17 6 -0.9603 -8.4582 -1.1788 18 7 -1.6376 -8.5229 -2.4763 19 6 -2.5628 -9.4754 -2.7066 20 8 -2.8350 -10.2787 -1.8397 21 6 -3.2591 -9.5424 -4.0414 22 1 -2.5529 -9.3542 -4.8501 23 6 -4.4238 -8.5346 -4.0951 24 7 -5.6116 -9.3841 -4.2949 25 6 -5.2311 -10.6670 -4.3537 26 8 -6.0134 -11.5839 -4.5140 27 7 -3.9108 -10.8487 -4.2188 28 6 0.8295 -7.3039 0.1269 29 6 1.8247 -6.1411 0.1258 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6847 -3.7145 -0.8904 33 1 2.6848 -3.7145 0.8895 34 1 -0.2734 -3.8700 -1.3965 35 1 0.9524 -4.9185 -2.1490 36 1 -1.2922 -5.9684 -2.2376 37 1 -1.4098 -5.8666 -0.4642 38 1 -0.4274 -9.3921 -1.0002 39 1 -1.6979 -8.3043 -0.3912 40 1 -1.4196 -7.8807 -3.1697 41 1 -4.4987 -7.9862 -3.1561 42 1 -4.2972 -7.8476 -4.9318 43 1 -6.5241 -9.0644 -4.3729 44 1 -3.4568 -11.7056 -4.2352 45 1 1.3717 -8.2453 0.2165 46 1 0.1458 -7.1964 0.9689 47 1 2.5086 -6.2481 -0.7162 48 1 2.3912 -6.1470 1.0570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699979664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:26 Heat of formation + Delta-G solvation = -96.427011 kcal Electronic energy + Delta-G solvation = -27294.486031 eV Core-core repulsion = 23382.484232 eV Total energy + Delta-G solvation = -3912.001799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34876 -40.64328 -39.77932 -37.45726 -37.08915 -35.76574 -34.01680 -33.73423 -31.76034 -31.59802 -30.24732 -27.79634 -25.81415 -24.80207 -24.13208 -23.29485 -22.84356 -21.67435 -21.50831 -20.67480 -19.34928 -19.14187 -18.58902 -17.45529 -16.98749 -16.94424 -16.65394 -16.39211 -15.98848 -15.74879 -15.44888 -15.27130 -15.16757 -15.04044 -14.97310 -14.70643 -14.47568 -14.07066 -13.90482 -13.59174 -13.18397 -13.09428 -12.85026 -12.63852 -12.56609 -12.47477 -11.98619 -11.88944 -11.81194 -11.61981 -11.45391 -11.39529 -11.30062 -11.01823 -10.91028 -10.82473 -10.58169 -10.11713 -9.85690 -9.09123 -8.40039 -5.32954 1.38276 1.58551 1.68364 1.68436 1.85008 1.94462 2.21016 2.71602 3.03727 3.30204 3.39358 3.58213 3.62481 3.73199 3.81929 3.89064 3.98727 4.17096 4.28101 4.33883 4.34479 4.53737 4.56805 4.60107 4.63513 4.64712 4.69425 4.76446 4.85291 4.90649 4.99506 5.05616 5.19441 5.21234 5.28756 5.31711 5.36285 5.44808 5.53952 5.59017 5.64661 5.88190 6.17560 6.25490 6.50158 6.51219 7.10985 7.16083 7.48805 8.02170 8.12963 9.12170 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.002036 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.690691 B =13751.952055 C =14883.850670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.105 4.105 3 Si 1.128 2.872 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.063 0.937 9 N -0.755 5.755 10 C 0.158 3.842 11 C -0.087 4.087 12 H 0.052 0.948 13 C -0.103 4.103 14 C -0.106 4.106 15 C -0.084 4.084 16 H 0.095 0.905 17 C 0.129 3.871 18 N -0.705 5.705 19 C 0.500 3.500 20 O -0.577 6.577 21 C 0.106 3.894 22 H 0.164 0.836 23 C 0.102 3.898 24 N -0.732 5.732 25 C 0.694 3.306 26 O -0.640 6.640 27 N -0.714 5.714 28 C -0.107 4.107 29 C -0.102 4.102 30 H 0.244 0.756 31 H 0.361 0.639 32 H 0.018 0.982 33 H 0.009 0.991 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.420 0.580 41 H 0.091 0.909 42 H 0.141 0.859 43 H 0.439 0.561 44 H 0.435 0.565 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -19.242 -10.697 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.296 4.296 3 Si 0.952 3.048 4 H -0.218 1.218 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.081 0.919 9 N -0.400 5.400 10 C 0.032 3.968 11 C -0.106 4.106 12 H 0.070 0.930 13 C -0.141 4.141 14 C -0.143 4.143 15 C -0.103 4.103 16 H 0.114 0.886 17 C 0.005 3.995 18 N -0.358 5.358 19 C 0.285 3.715 20 O -0.455 6.455 21 C -0.004 4.004 22 H 0.181 0.819 23 C -0.023 4.023 24 N -0.395 5.395 25 C 0.392 3.608 26 O -0.522 6.522 27 N -0.375 5.375 28 C -0.145 4.145 29 C -0.140 4.140 30 H 0.054 0.946 31 H 0.194 0.806 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.258 0.742 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.282 0.718 44 H 0.277 0.723 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.673 -18.605 -10.149 21.360 hybrid contribution -0.243 -1.375 0.261 1.420 sum -2.915 -19.979 -9.888 22.482 Atomic orbital electron populations 1.70994 1.07077 1.27846 1.56309 1.27215 0.97179 1.04642 1.00604 0.82629 0.73399 0.71603 0.77144 1.21798 1.20603 1.20212 1.20408 0.92320 0.87373 1.46672 0.91870 1.42599 1.04827 1.01980 1.90568 1.20831 0.94076 0.84942 0.96954 1.21263 0.96707 0.94330 0.98296 0.92993 1.21423 0.98005 0.97949 0.96739 1.21573 0.97132 0.93078 1.02551 1.21315 0.96441 0.92877 0.99680 0.88639 1.21347 0.94688 0.98583 0.84846 1.45883 1.39888 1.32748 1.17275 1.21227 0.79705 0.80748 0.89850 1.90767 1.65009 1.42109 1.47645 1.22190 0.97583 0.84389 0.96210 0.81878 1.22679 0.81009 0.92638 1.05944 1.45157 1.11333 1.05144 1.77855 1.16203 0.83168 0.84124 0.77312 1.90961 1.55890 1.45126 1.60254 1.44855 1.05979 1.09596 1.77082 1.21472 0.97652 0.98349 0.96981 1.21449 0.97767 0.92522 1.02311 0.94573 0.80627 0.96394 0.97351 0.94660 0.91631 0.89812 0.92887 0.91485 0.92703 0.74168 0.89120 0.84101 0.71770 0.72304 0.90003 0.92304 0.90968 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.44 13.70 21.65 0.30 -60.15 16 2 C -0.11 -6.09 5.50 84.86 0.47 -5.63 16 3 Si 1.13 51.39 29.92 68.60 2.05 53.44 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -19.00 9.99 84.03 0.84 -18.16 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 9 N -0.75 -37.91 5.33 -343.45 -1.83 -39.74 16 10 C 0.16 6.20 5.65 86.38 0.49 6.68 16 11 C -0.09 -2.49 2.23 -10.79 -0.02 -2.52 16 12 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 13 C -0.10 -2.60 5.08 30.59 0.16 -2.45 16 14 C -0.11 -1.73 5.08 30.59 0.16 -1.58 16 15 C -0.08 -1.05 2.23 -10.79 -0.02 -1.07 16 16 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 17 C 0.13 1.63 5.06 86.38 0.44 2.07 16 18 N -0.70 -5.97 5.28 -463.05 -2.45 -8.41 16 19 C 0.50 6.59 6.94 87.66 0.61 7.19 16 20 O -0.58 -14.12 16.58 -3.04 -0.05 -14.17 16 21 C 0.11 0.74 4.16 44.51 0.19 0.93 16 22 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 23 C 0.10 0.50 7.72 86.58 0.67 1.17 16 24 N -0.73 -9.02 6.39 -476.58 -3.04 -12.06 16 25 C 0.69 14.47 8.92 179.57 1.60 16.07 16 26 O -0.64 -20.04 18.05 -4.00 -0.07 -20.11 16 27 N -0.71 -10.55 5.62 -460.32 -2.59 -13.13 16 28 C -0.11 -1.64 5.20 30.61 0.16 -1.48 16 29 C -0.10 -2.12 5.21 30.61 0.16 -1.96 16 30 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 31 H 0.36 18.65 5.68 -92.71 -0.53 18.13 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.03 1.13 7.18 -2.38 -0.02 1.11 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 0.95 7.18 -2.39 -0.02 0.94 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.42 0.84 7.65 -92.71 -0.71 0.13 16 41 H 0.09 0.48 7.72 -2.39 -0.02 0.46 16 42 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.44 4.21 8.96 -92.71 -0.83 3.38 16 44 H 0.43 6.13 8.96 -92.71 -0.83 5.30 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -87.35 383.08 -3.56 -90.91 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -1.75 Total: 24.16 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.88 Total: -0.73 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -9.61 Total: -133.50 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.12 Total: -34.28 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -87.35 -3.56 -90.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699979664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.518 kcal (2) G-P(sol) polarization free energy of solvation -87.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds