Wall clock time and date at job start Fri Apr 10 2020 18:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48490 * 109.47090 * 269.99773 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00408 * 3 2 1 6 6 H 1.48501 * 109.46723 * 149.99770 * 3 2 1 7 7 C 1.38817 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46044 * 125.23958 * 359.32392 * 9 7 2 11 11 C 1.53931 * 107.07602 * 198.01461 * 10 9 7 12 12 H 1.09005 * 113.60364 * 209.70630 * 11 10 9 13 13 C 1.53967 * 109.25084 * 82.51420 * 11 10 9 14 14 N 1.46776 * 106.62681 * 221.80967 * 13 11 10 15 15 C 1.34774 * 125.33922 * 198.49320 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99856 * 180.02562 * 15 14 13 18 18 C 1.53009 * 109.46688 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46625 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47087 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.47461 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00084 * 180.02562 * 21 20 19 23 23 N 1.34773 * 119.99601 * 179.97438 * 22 21 20 24 24 O 1.21585 * 119.99754 * 359.97438 * 22 21 20 25 25 C 1.46666 * 109.32261 * 18.51868 * 14 13 11 26 26 C 1.53725 * 107.94547 * 359.45198 * 25 14 13 27 27 H 1.08999 * 112.56169 * 220.28763 * 26 25 14 28 28 C 1.46644 * 125.32504 * 179.97438 * 9 7 2 29 29 H 0.97009 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.10347 * 78.99071 * 10 9 7 31 31 H 1.09002 * 110.55965 * 317.85317 * 10 9 7 32 32 H 1.09001 * 110.02494 * 341.10284 * 13 11 10 33 33 H 1.09002 * 110.03201 * 102.51875 * 13 11 10 34 34 H 1.08997 * 109.47229 * 300.00063 * 17 15 14 35 35 H 1.08999 * 109.47185 * 60.00527 * 17 15 14 36 36 H 1.09003 * 109.46881 * 299.99553 * 18 17 15 37 37 H 1.08999 * 109.47058 * 60.00227 * 18 17 15 38 38 H 1.09002 * 109.47610 * 299.99823 * 19 18 17 39 39 H 1.09003 * 109.47661 * 59.99607 * 19 18 17 40 40 H 1.08997 * 109.47098 * 300.00009 * 20 19 18 41 41 H 1.09000 * 109.47160 * 59.99929 * 20 19 18 42 42 H 0.97001 * 119.99259 * 359.97438 * 21 20 19 43 43 H 0.96997 * 120.00049 * 0.02562 * 23 22 21 44 44 H 0.97005 * 119.99661 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.77152 * 239.83467 * 25 14 13 46 46 H 1.09002 * 109.77945 * 119.07579 * 25 14 13 47 47 H 1.08999 * 109.75787 * 59.52648 * 28 9 7 48 48 H 1.08995 * 109.76195 * 298.79774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1288 -2.5213 0.0141 11 6 -0.4468 -3.9586 0.4641 12 1 -1.3764 -4.3499 0.0505 13 6 -0.3936 -4.0328 2.0011 14 7 0.2905 -5.2870 2.3376 15 6 0.2400 -5.9059 3.5337 16 8 -0.4113 -5.4265 4.4376 17 6 0.9927 -7.1938 3.7481 18 6 0.7683 -7.6832 5.1804 19 6 1.5330 -8.9904 5.3982 20 6 1.3093 -9.4795 6.8305 21 7 2.0410 -10.7315 7.0390 22 6 1.9900 -11.3507 8.2350 23 7 2.6627 -12.5027 8.4265 24 8 1.3371 -10.8700 9.1411 25 6 1.0384 -5.7607 1.1682 26 6 0.8078 -4.7624 0.0222 27 1 0.6749 -5.2549 -0.9410 28 6 1.9376 -3.7206 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5119 -2.3523 -0.9923 31 1 -0.5723 -1.8066 0.7074 32 1 0.1655 -3.1848 2.3966 33 1 -1.4041 -4.0375 2.4099 34 1 0.6323 -7.9464 3.0468 35 1 2.0568 -7.0243 3.5842 36 1 1.1285 -6.9308 5.8820 37 1 -0.2959 -7.8528 5.3439 38 1 1.1734 -9.7431 4.6966 39 1 2.5972 -8.8205 5.2347 40 1 1.6693 -8.7268 7.5319 41 1 0.2452 -9.6494 6.9944 42 1 2.5615 -11.1151 6.3160 43 1 3.1839 -12.8860 7.7038 44 1 2.6263 -12.9482 9.2875 45 1 0.6789 -6.7473 0.8756 46 1 2.1011 -5.8107 1.4055 47 1 2.5641 -3.8383 0.8847 48 1 2.5404 -3.8493 -0.8984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699989517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:30 Heat of formation + Delta-G solvation = -52.037167 kcal Electronic energy + Delta-G solvation = -27127.469306 eV Core-core repulsion = 23217.392395 eV Total energy + Delta-G solvation = -3910.076911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23902 -40.09527 -38.37948 -36.31916 -35.01332 -34.23814 -33.47752 -32.28748 -30.43801 -29.74720 -29.13887 -25.86723 -25.49619 -24.25837 -22.78000 -21.69955 -21.26548 -20.12857 -19.40613 -19.01546 -18.56660 -17.64738 -17.15048 -16.58916 -16.44398 -15.86630 -15.34705 -15.18560 -15.07687 -14.73812 -14.52300 -14.49198 -13.71741 -13.49670 -13.16623 -12.94449 -12.66320 -12.55656 -12.12550 -11.96239 -11.85940 -11.79264 -11.55279 -11.47226 -11.41297 -10.97232 -10.89465 -10.84097 -10.65802 -10.40141 -10.14714 -10.10396 -10.01609 -9.89721 -9.67293 -9.60107 -9.37710 -8.64545 -8.34347 -6.87075 -5.72207 -3.10902 2.52669 2.81271 2.86926 3.23020 3.38280 3.43468 3.45557 4.08889 4.42522 4.45731 4.53666 4.63346 4.77666 4.95557 5.02800 5.05763 5.17278 5.25461 5.40390 5.41079 5.45658 5.52116 5.53365 5.64316 5.69701 5.74324 5.80313 5.89452 5.97161 6.07881 6.12850 6.16752 6.31008 6.31443 6.38220 6.51008 6.53174 6.63616 6.72264 6.79002 7.43382 7.56316 7.59362 7.77881 7.79485 8.25729 8.29202 8.36209 9.19817 9.79678 10.41918 11.34420 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.001903 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.312876 B =14712.427051 C =14964.002735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.172 3.828 11 C -0.122 4.122 12 H 0.086 0.914 13 C 0.119 3.881 14 N -0.611 5.611 15 C 0.522 3.478 16 O -0.546 6.546 17 C -0.134 4.134 18 C -0.101 4.101 19 C -0.130 4.130 20 C 0.135 3.865 21 N -0.745 5.745 22 C 0.703 3.297 23 N -0.870 5.870 24 O -0.594 6.594 25 C 0.112 3.888 26 C -0.110 4.110 27 H 0.094 0.906 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.396 0.604 43 H 0.396 0.604 44 H 0.414 0.586 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.023 0.977 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -24.978 6.198 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.047 3.953 11 C -0.143 4.143 12 H 0.105 0.895 13 C -0.003 4.003 14 N -0.345 5.345 15 C 0.310 3.690 16 O -0.424 6.424 17 C -0.174 4.174 18 C -0.140 4.140 19 C -0.168 4.168 20 C 0.011 3.989 21 N -0.402 5.402 22 C 0.400 3.600 23 N -0.438 5.438 24 O -0.472 6.472 25 C -0.011 4.011 26 C -0.129 4.129 27 H 0.112 0.888 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.224 0.776 44 H 0.246 0.754 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.040 0.960 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.968 -23.955 7.429 25.393 hybrid contribution 1.071 0.232 -0.602 1.251 sum 5.040 -23.723 6.827 25.195 Atomic orbital electron populations 1.69870 1.04869 1.25029 1.57140 1.24802 0.95755 0.97778 1.02086 0.86078 0.78568 0.83326 0.77544 1.21590 1.21610 1.20704 1.19038 0.90509 0.82311 1.43734 0.90443 1.44042 1.01674 0.99913 1.86979 1.21245 0.84881 0.89390 0.99792 1.23281 0.96945 1.00295 0.93744 0.89546 1.22032 0.97198 0.85789 0.95308 1.48401 1.49421 1.25277 1.11390 1.20281 0.81794 0.85974 0.80910 1.90703 1.43188 1.67188 1.41339 1.21625 1.01466 0.95268 0.99010 1.21231 1.01440 0.95864 0.95456 1.21810 1.01444 0.98029 0.95514 1.21270 0.96685 0.84221 0.96729 1.45139 1.55107 1.27008 1.12924 1.16004 0.80095 0.80713 0.83144 1.43002 1.55694 1.26229 1.18846 1.90994 1.46584 1.67144 1.42448 1.21898 0.96098 0.97286 0.85821 1.22752 0.97412 0.95661 0.97108 0.88754 1.21180 0.93321 0.85689 0.98004 0.93625 0.96292 0.88667 0.90436 0.91535 0.89123 0.88995 0.90644 0.90720 0.91181 0.91113 0.91255 0.91309 0.77027 0.77628 0.75393 0.91980 0.91423 0.95968 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.17 55.49 0.56 -25.83 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.71 3.36 -172.48 -0.58 -15.29 16 10 C 0.17 3.99 4.73 -3.80 -0.02 3.97 16 11 C -0.12 -2.16 4.17 -88.35 -0.37 -2.53 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.12 2.16 6.13 -3.39 -0.02 2.14 16 14 N -0.61 -9.45 3.31 -172.29 -0.57 -10.02 16 15 C 0.52 7.87 7.84 -10.98 -0.09 7.78 16 16 O -0.55 -10.41 16.26 5.56 0.09 -10.32 16 17 C -0.13 -1.29 4.87 -27.88 -0.14 -1.42 16 18 C -0.10 -0.93 4.50 -26.73 -0.12 -1.05 16 19 C -0.13 -0.79 5.33 -26.73 -0.14 -0.94 16 20 C 0.13 1.07 5.67 -4.04 -0.02 1.05 16 21 N -0.75 -4.92 5.56 -65.22 -0.36 -5.29 16 22 C 0.70 6.41 8.84 -86.92 -0.77 5.64 16 23 N -0.87 -3.93 8.88 27.63 0.25 -3.68 16 24 O -0.59 -8.56 17.18 5.29 0.09 -8.47 16 25 C 0.11 1.42 5.87 -3.57 -0.02 1.40 16 26 C -0.11 -1.69 3.98 -88.60 -0.35 -2.04 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 C 0.14 2.79 6.64 -3.60 -0.02 2.77 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 2.51 6.04 -51.93 -0.31 2.19 16 32 H 0.08 1.68 7.71 -51.93 -0.40 1.28 16 33 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 1.31 8.49 -40.82 -0.35 0.96 16 43 H 0.40 0.47 8.84 -40.82 -0.36 0.10 16 44 H 0.41 1.59 8.93 -40.82 -0.36 1.23 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.79 7.47 -51.93 -0.39 0.40 16 47 H 0.02 0.44 7.34 -51.93 -0.38 0.06 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -36.28 384.71 -10.09 -46.37 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.01 Total: -0.21 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -2.33 Total: 10.09 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.70 Total: -60.10 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.28 -10.09 -46.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699989517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.669 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds