Wall clock time and date at job start Fri Apr 10 2020 18:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48490 * 109.47090 * 269.99773 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00408 * 3 2 1 6 6 H 1.48501 * 109.46723 * 149.99770 * 3 2 1 7 7 C 1.38817 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46044 * 125.23958 * 359.32392 * 9 7 2 11 11 C 1.53931 * 107.07602 * 198.01461 * 10 9 7 12 12 H 1.09005 * 113.60364 * 209.70630 * 11 10 9 13 13 C 1.53967 * 109.25084 * 82.51420 * 11 10 9 14 14 N 1.46776 * 106.62681 * 221.80967 * 13 11 10 15 15 C 1.34774 * 125.33922 * 198.49320 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99856 * 180.02562 * 15 14 13 18 18 C 1.53009 * 109.46688 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46625 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47087 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.47461 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00084 * 180.02562 * 21 20 19 23 23 N 1.34773 * 119.99601 * 179.97438 * 22 21 20 24 24 O 1.21585 * 119.99754 * 359.97438 * 22 21 20 25 25 C 1.46666 * 109.32261 * 18.51868 * 14 13 11 26 26 C 1.53725 * 107.94547 * 359.45198 * 25 14 13 27 27 H 1.08999 * 112.56169 * 220.28763 * 26 25 14 28 28 C 1.46644 * 125.32504 * 179.97438 * 9 7 2 29 29 H 0.97009 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.10347 * 78.99071 * 10 9 7 31 31 H 1.09002 * 110.55965 * 317.85317 * 10 9 7 32 32 H 1.09001 * 110.02494 * 341.10284 * 13 11 10 33 33 H 1.09002 * 110.03201 * 102.51875 * 13 11 10 34 34 H 1.08997 * 109.47229 * 300.00063 * 17 15 14 35 35 H 1.08999 * 109.47185 * 60.00527 * 17 15 14 36 36 H 1.09003 * 109.46881 * 299.99553 * 18 17 15 37 37 H 1.08999 * 109.47058 * 60.00227 * 18 17 15 38 38 H 1.09002 * 109.47610 * 299.99823 * 19 18 17 39 39 H 1.09003 * 109.47661 * 59.99607 * 19 18 17 40 40 H 1.08997 * 109.47098 * 300.00009 * 20 19 18 41 41 H 1.09000 * 109.47160 * 59.99929 * 20 19 18 42 42 H 0.97001 * 119.99259 * 359.97438 * 21 20 19 43 43 H 0.96997 * 120.00049 * 0.02562 * 23 22 21 44 44 H 0.97005 * 119.99661 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.77152 * 239.83467 * 25 14 13 46 46 H 1.09002 * 109.77945 * 119.07579 * 25 14 13 47 47 H 1.08999 * 109.75787 * 59.52648 * 28 9 7 48 48 H 1.08995 * 109.76195 * 298.79774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1288 -2.5213 0.0141 11 6 -0.4468 -3.9586 0.4641 12 1 -1.3764 -4.3499 0.0505 13 6 -0.3936 -4.0328 2.0011 14 7 0.2905 -5.2870 2.3376 15 6 0.2400 -5.9059 3.5337 16 8 -0.4113 -5.4265 4.4376 17 6 0.9927 -7.1938 3.7481 18 6 0.7683 -7.6832 5.1804 19 6 1.5330 -8.9904 5.3982 20 6 1.3093 -9.4795 6.8305 21 7 2.0410 -10.7315 7.0390 22 6 1.9900 -11.3507 8.2350 23 7 2.6627 -12.5027 8.4265 24 8 1.3371 -10.8700 9.1411 25 6 1.0384 -5.7607 1.1682 26 6 0.8078 -4.7624 0.0222 27 1 0.6749 -5.2549 -0.9410 28 6 1.9376 -3.7206 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5119 -2.3523 -0.9923 31 1 -0.5723 -1.8066 0.7074 32 1 0.1655 -3.1848 2.3966 33 1 -1.4041 -4.0375 2.4099 34 1 0.6323 -7.9464 3.0468 35 1 2.0568 -7.0243 3.5842 36 1 1.1285 -6.9308 5.8820 37 1 -0.2959 -7.8528 5.3439 38 1 1.1734 -9.7431 4.6966 39 1 2.5972 -8.8205 5.2347 40 1 1.6693 -8.7268 7.5319 41 1 0.2452 -9.6494 6.9944 42 1 2.5615 -11.1151 6.3160 43 1 3.1839 -12.8860 7.7038 44 1 2.6263 -12.9482 9.2875 45 1 0.6789 -6.7473 0.8756 46 1 2.1011 -5.8107 1.4055 47 1 2.5641 -3.8383 0.8847 48 1 2.5404 -3.8493 -0.8984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699989517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:29 Heat of formation + Delta-G solvation = -81.231682 kcal Electronic energy + Delta-G solvation = -27128.735275 eV Core-core repulsion = 23217.392395 eV Total energy + Delta-G solvation = -3911.342880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49704 -40.80487 -39.71757 -37.04578 -36.59086 -34.96591 -34.19971 -33.97989 -31.87260 -31.27702 -30.05239 -27.41380 -27.03795 -25.38152 -24.03192 -22.34042 -21.97471 -21.81567 -20.82777 -20.16467 -19.17252 -18.86892 -18.18455 -17.91637 -17.33930 -16.88965 -16.72501 -16.39180 -16.21237 -15.72708 -15.54962 -15.51586 -15.19159 -14.57919 -14.46299 -14.36245 -13.82754 -13.59930 -13.51634 -13.26909 -13.19973 -13.11845 -12.75374 -12.71231 -12.63965 -12.43497 -12.07465 -12.02873 -11.87483 -11.67749 -11.54396 -11.51141 -11.48288 -11.37927 -10.87903 -10.73280 -10.67858 -9.95023 -9.59442 -8.86094 -7.81486 -5.21349 1.44869 1.46635 1.54969 1.68096 1.94140 2.13449 2.18077 2.48573 3.31315 3.40681 3.55131 3.68901 3.77771 3.83453 3.92838 3.97479 4.06162 4.28671 4.31429 4.35654 4.41104 4.53763 4.56423 4.62056 4.77713 4.82141 4.85640 4.87191 4.92125 5.01853 5.05478 5.06505 5.19978 5.29103 5.34898 5.38634 5.43943 5.48179 5.52916 5.60207 5.82110 5.93408 6.05730 6.28359 6.63155 7.12615 7.14933 7.20716 7.67828 7.82165 8.41349 9.23098 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.001903 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.312876 B =14712.427051 C =14964.002735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.179 3.821 11 C -0.110 4.110 12 H 0.113 0.887 13 C 0.127 3.873 14 N -0.614 5.614 15 C 0.512 3.488 16 O -0.599 6.599 17 C -0.120 4.120 18 C -0.101 4.101 19 C -0.111 4.111 20 C 0.135 3.865 21 N -0.730 5.730 22 C 0.693 3.307 23 N -0.847 5.847 24 O -0.655 6.655 25 C 0.114 3.886 26 C -0.096 4.096 27 H 0.129 0.871 28 C 0.136 3.864 29 H 0.246 0.754 30 H -0.009 1.009 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.416 0.584 43 H 0.416 0.584 44 H 0.419 0.581 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.021 0.979 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -28.830 4.640 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.053 3.947 11 C -0.130 4.130 12 H 0.131 0.869 13 C 0.003 3.997 14 N -0.347 5.347 15 C 0.303 3.697 16 O -0.480 6.480 17 C -0.159 4.159 18 C -0.140 4.140 19 C -0.148 4.148 20 C 0.010 3.990 21 N -0.387 5.387 22 C 0.391 3.609 23 N -0.416 5.416 24 O -0.537 6.537 25 C -0.007 4.007 26 C -0.115 4.115 27 H 0.147 0.853 28 C 0.011 3.989 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.253 0.747 43 H 0.247 0.753 44 H 0.252 0.748 45 H 0.130 0.870 46 H 0.105 0.895 47 H 0.039 0.961 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.263 -27.903 5.803 29.179 hybrid contribution 0.418 1.430 -0.099 1.493 sum 6.681 -26.473 5.703 27.892 Atomic orbital electron populations 1.70134 1.06175 1.25015 1.58503 1.25629 0.96620 1.01012 1.02769 0.85097 0.77587 0.79274 0.77506 1.21069 1.22382 1.19533 1.19423 0.91028 0.83793 1.42555 0.90054 1.44343 1.02452 1.01305 1.86752 1.20926 0.84366 0.92246 0.97126 1.23077 0.99589 0.97156 0.93175 0.86871 1.21625 0.96269 0.86203 0.95576 1.48524 1.49382 1.24012 1.12742 1.21428 0.81210 0.87258 0.79765 1.90686 1.45523 1.68869 1.42968 1.21686 1.01981 0.92600 0.99640 1.21189 1.00839 0.96891 0.95083 1.21654 1.02211 0.96660 0.94315 1.21161 0.95718 0.84312 0.97805 1.44907 1.54706 1.26287 1.12812 1.16324 0.80001 0.81532 0.83057 1.42784 1.54485 1.24592 1.19788 1.90955 1.49297 1.68958 1.44518 1.22122 0.97169 0.98200 0.83256 1.22809 0.93608 0.94973 1.00114 0.85275 1.21452 0.94883 0.84418 0.98112 0.94472 0.99138 0.92971 0.95243 0.92531 0.85324 0.86422 0.93224 0.92478 0.88495 0.89047 0.93531 0.93161 0.74653 0.75323 0.74839 0.86985 0.89466 0.96086 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.09 10.17 21.65 0.22 -56.87 16 2 C -0.07 -3.85 5.48 84.86 0.47 -3.39 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.24 -13.27 10.25 84.03 0.86 -12.41 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.03 3.36 -699.62 -2.35 -33.38 16 10 C 0.18 8.61 4.73 86.78 0.41 9.02 16 11 C -0.11 -3.79 4.17 -9.32 -0.04 -3.83 16 12 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 13 C 0.13 4.69 6.13 86.65 0.53 5.23 16 14 N -0.61 -17.59 3.31 -817.38 -2.71 -20.30 16 15 C 0.51 14.55 7.84 87.66 0.69 15.24 16 16 O -0.60 -23.31 16.26 -3.02 -0.05 -23.36 16 17 C -0.12 -1.80 4.87 29.85 0.15 -1.66 16 18 C -0.10 -1.66 4.50 30.60 0.14 -1.52 16 19 C -0.11 -0.96 5.33 30.59 0.16 -0.79 16 20 C 0.13 2.00 5.67 86.38 0.49 2.49 16 21 N -0.73 -8.08 5.56 -478.53 -2.66 -10.74 16 22 C 0.69 11.91 8.84 179.06 1.58 13.49 16 23 N -0.85 -5.92 8.88 -184.75 -1.64 -7.56 16 24 O -0.65 -19.28 17.18 -3.98 -0.07 -19.34 16 25 C 0.11 2.30 5.87 86.59 0.51 2.81 16 26 C -0.10 -2.60 3.98 -9.49 -0.04 -2.64 16 27 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 28 C 0.14 5.03 6.64 86.59 0.57 5.61 16 29 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.05 2.95 6.04 -2.39 -0.01 2.93 16 32 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 33 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.42 1.17 8.49 -92.71 -0.79 0.39 16 43 H 0.42 -0.32 8.84 -92.71 -0.82 -1.14 16 44 H 0.42 2.54 8.93 -92.70 -0.83 1.71 16 45 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.09 1.50 7.47 -2.39 -0.02 1.49 16 47 H 0.02 0.79 7.34 -2.39 -0.02 0.77 16 48 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -88.26 384.71 -2.20 -90.46 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -1.45 Total: 5.35 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 6.48 Total: 27.63 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -9.14 Total: -128.85 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.12 Total: -42.70 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -88.26 -2.20 -90.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699989517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.227 kcal (2) G-P(sol) polarization free energy of solvation -88.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds