Wall clock time and date at job start Fri Apr 10 2020 18:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47157 * 300.00143 * 3 2 1 6 6 H 1.48497 * 109.46793 * 60.00228 * 3 2 1 7 7 C 1.38817 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99941 * 200.72309 * 7 2 1 9 9 N 1.36936 * 119.99992 * 20.72211 * 7 2 1 10 10 C 1.46499 * 120.00120 * 37.79388 * 9 7 2 11 11 C 1.52993 * 109.47023 * 90.00235 * 10 9 7 12 12 C 1.53008 * 109.47188 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99882 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00428 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99961 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.87413 * 40.43439 * 16 14 13 18 18 C 1.54322 * 109.87975 * 279.25919 * 16 14 13 19 19 C 1.55162 * 102.94142 * 218.39130 * 18 16 14 20 20 C 1.54904 * 101.58074 * 35.50149 * 19 18 16 21 21 N 1.47024 * 109.88290 * 161.44961 * 16 14 13 22 22 C 1.34771 * 125.65138 * 298.39575 * 21 16 14 23 23 N 1.34772 * 120.00091 * 179.97438 * 22 21 16 24 24 O 1.21594 * 119.99922 * 359.97438 * 22 21 16 25 25 C 1.46505 * 119.99723 * 217.79449 * 9 7 2 26 26 C 1.52999 * 117.50045 * 14.21762 * 25 9 7 27 27 C 1.52995 * 117.50013 * 305.59161 * 25 9 7 28 28 H 0.97004 * 120.00291 * 354.92996 * 1 2 3 29 29 H 1.09005 * 109.47101 * 329.99813 * 10 9 7 30 30 H 1.09004 * 109.46667 * 210.00201 * 10 9 7 31 31 H 1.08998 * 109.47158 * 59.99979 * 11 10 9 32 32 H 1.08996 * 109.47379 * 299.99835 * 11 10 9 33 33 H 1.08996 * 109.46955 * 300.00253 * 12 11 10 34 34 H 1.09005 * 109.46889 * 59.99606 * 12 11 10 35 35 H 0.97006 * 120.00265 * 359.97438 * 13 12 11 36 36 H 1.09000 * 110.72414 * 336.75323 * 18 16 14 37 37 H 1.09002 * 110.71732 * 100.02769 * 18 16 14 38 38 H 1.09008 * 111.00229 * 277.42907 * 19 18 16 39 39 H 1.08998 * 111.03423 * 153.59336 * 19 18 16 40 40 H 1.09008 * 110.36455 * 204.15188 * 20 19 18 41 41 H 1.09001 * 110.36657 * 81.83226 * 20 19 18 42 42 H 0.96994 * 120.00616 * 359.97438 * 23 22 21 43 43 H 0.97000 * 119.99846 * 179.97438 * 23 22 21 44 44 H 1.09003 * 115.55012 * 159.92497 * 25 9 7 45 45 H 1.09000 * 117.49504 * 359.97438 * 26 25 9 46 46 H 1.09002 * 117.49820 * 145.01761 * 26 25 9 47 47 H 1.08996 * 117.50224 * 214.97533 * 27 25 9 48 48 H 1.09005 * 117.49844 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0378 -1.2326 0.3304 9 7 1.3919 -2.3495 -0.4207 10 6 0.4593 -2.3078 -1.5497 11 6 1.2247 -2.5476 -2.8525 12 6 0.2506 -2.5047 -4.0317 13 7 0.9835 -2.7337 -5.2792 14 6 0.3261 -2.7393 -6.4557 15 8 -0.8723 -2.5552 -6.4816 16 6 1.0801 -2.9754 -7.7391 17 1 1.8280 -3.7545 -7.5915 18 6 1.7619 -1.6683 -8.1952 19 6 1.5901 -1.7064 -9.7368 20 6 0.1966 -2.3681 -9.8781 21 7 0.1456 -3.3742 -8.8018 22 6 -0.6297 -4.4765 -8.7931 23 7 -1.4490 -4.7323 -9.8322 24 8 -0.5901 -5.2403 -7.8478 25 6 1.6632 -3.6188 0.2590 26 6 2.3685 -3.5573 1.6153 27 6 3.1241 -4.0562 0.3819 28 1 -0.4851 0.8368 0.0742 29 1 -0.0235 -1.3312 -1.5863 30 1 -0.2972 -3.0827 -1.4248 31 1 1.7074 -3.5242 -2.8159 32 1 1.9812 -1.7729 -2.9774 33 1 -0.5056 -3.2797 -3.9066 34 1 -0.2326 -1.5283 -4.0684 35 1 1.9422 -2.8805 -5.2586 36 1 1.2553 -0.8009 -7.7721 37 1 2.8179 -1.6695 -7.9247 38 1 2.3627 -2.3195 -10.2010 39 1 1.5890 -0.6999 -10.1553 40 1 0.1021 -2.8490 -10.8518 41 1 -0.5909 -1.6268 -9.7422 42 1 -1.4810 -4.1230 -10.5861 43 1 -2.0068 -5.5259 -9.8260 44 1 0.9148 -4.3982 0.1154 45 1 2.6311 -2.5725 2.0017 46 1 2.0841 -4.2962 2.3644 47 1 3.3369 -5.1233 0.3198 48 1 3.8835 -3.3994 -0.0425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752290744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:36 Heat of formation + Delta-G solvation = -16.744648 kcal Electronic energy + Delta-G solvation = -27925.721356 eV Core-core repulsion = 24017.174843 eV Total energy + Delta-G solvation = -3908.546512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81384 -38.95340 -37.39662 -37.06127 -35.12570 -33.88059 -33.50890 -31.67548 -31.41190 -30.11564 -28.90374 -25.44557 -24.40017 -23.38257 -21.88560 -21.33290 -21.12662 -20.90848 -19.82385 -19.51739 -18.48382 -17.56984 -16.88930 -16.38983 -15.74748 -15.60975 -15.35269 -15.20254 -14.79011 -14.60110 -14.39107 -14.08046 -13.69655 -13.55401 -13.29288 -13.21763 -12.81449 -12.67296 -12.03289 -11.93576 -11.79489 -11.72764 -11.40825 -11.27885 -10.96712 -10.81523 -10.74318 -10.55231 -10.38283 -10.35565 -10.10829 -9.85685 -9.83319 -9.75577 -9.46303 -9.21887 -8.77500 -8.72163 -8.44835 -6.46676 -5.82979 -3.40164 2.37664 2.85157 3.08667 3.31109 3.40379 3.42654 3.48041 3.97702 4.10819 4.27327 4.40994 4.54324 4.80169 4.86178 4.98434 5.04138 5.17710 5.19317 5.34534 5.35191 5.44711 5.47682 5.70012 5.74598 5.80672 5.88832 5.95035 6.08230 6.18422 6.28696 6.44789 6.50392 6.53108 6.56936 6.65113 6.73800 6.76351 6.86220 7.00276 7.14623 7.20860 7.66142 7.68700 7.75611 7.81521 8.43026 8.50171 8.51498 9.15395 9.77797 10.35487 11.17406 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.002773 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.036235 B =10094.711372 C =11020.525164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.261 4.261 8 H 0.062 0.938 9 N -0.550 5.550 10 C 0.152 3.848 11 C -0.144 4.144 12 C 0.123 3.877 13 N -0.722 5.722 14 C 0.505 3.495 15 O -0.531 6.531 16 C 0.137 3.863 17 H 0.097 0.903 18 C -0.122 4.122 19 C -0.129 4.129 20 C 0.099 3.901 21 N -0.617 5.617 22 C 0.729 3.271 23 N -0.865 5.865 24 O -0.582 6.582 25 C 0.128 3.872 26 C -0.198 4.198 27 C -0.228 4.228 28 H 0.257 0.743 29 H 0.099 0.901 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.394 0.606 43 H 0.415 0.585 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 -4.505 -22.468 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.391 4.391 8 H 0.080 0.920 9 N -0.266 5.266 10 C 0.026 3.974 11 C -0.184 4.184 12 C 0.000 4.000 13 N -0.374 5.374 14 C 0.289 3.711 15 O -0.407 6.407 16 C 0.029 3.971 17 H 0.114 0.886 18 C -0.160 4.160 19 C -0.167 4.167 20 C -0.024 4.024 21 N -0.356 5.356 22 C 0.430 3.570 23 N -0.433 5.433 24 O -0.458 6.458 25 C 0.018 3.982 26 C -0.237 4.237 27 C -0.269 4.269 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.222 0.778 43 H 0.247 0.753 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.279 -4.685 -21.824 22.437 hybrid contribution 0.661 0.753 -0.231 1.028 sum 2.940 -3.933 -22.055 22.595 Atomic orbital electron populations 1.69903 1.05583 1.26046 1.51256 1.25240 0.95082 0.98711 0.99438 0.86304 0.79715 0.83833 0.77433 1.20042 1.21330 1.21546 1.18949 0.94166 0.84773 1.41214 0.92048 1.43393 1.50360 1.02252 1.30571 1.20832 0.90445 1.02888 0.83263 1.22437 0.98998 1.01337 0.95647 1.21427 0.95274 1.01302 0.82026 1.46081 1.11797 1.72963 1.06537 1.20712 0.88289 0.76933 0.85200 1.90682 1.14563 1.48439 1.87016 1.21356 0.90883 0.98405 0.86472 0.88553 1.22640 1.01621 0.95664 0.96102 1.22761 0.96313 1.01876 0.95727 1.22332 0.98431 0.91259 0.90386 1.47170 1.44284 1.23495 1.20658 1.15339 0.78470 0.80445 0.82785 1.42904 1.47191 1.31031 1.22211 1.91003 1.70564 1.49069 1.35173 1.21132 0.91342 0.90799 0.94922 1.23061 1.07039 1.02001 0.91594 1.23350 0.99955 0.98889 1.04694 0.93295 0.88364 0.95390 0.92963 0.91679 0.92049 0.91680 0.76891 0.89665 0.88654 0.90082 0.89225 0.90637 0.91051 0.77773 0.75318 0.89518 0.88381 0.90906 0.91045 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 11.44 55.49 0.63 -24.41 16 2 C 0.02 0.43 4.97 -17.43 -0.09 0.35 16 3 Si 0.90 21.10 29.61 -169.99 -5.03 16.06 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.92 8.04 -15.06 -0.12 -7.04 16 8 H 0.06 1.65 7.21 -52.49 -0.38 1.27 16 9 N -0.55 -13.46 2.78 -165.66 -0.46 -13.92 16 10 C 0.15 3.49 5.33 -4.05 -0.02 3.47 16 11 C -0.14 -2.72 5.65 -26.73 -0.15 -2.87 16 12 C 0.12 2.20 5.67 -4.04 -0.02 2.17 16 13 N -0.72 -10.86 5.56 -60.29 -0.33 -11.19 16 14 C 0.51 8.04 6.27 -10.98 -0.07 7.97 16 15 O -0.53 -10.76 16.13 5.56 0.09 -10.67 16 16 C 0.14 1.57 3.26 -68.10 -0.22 1.35 16 17 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.12 -0.92 6.47 -24.89 -0.16 -1.09 16 19 C -0.13 -0.67 7.08 -24.58 -0.17 -0.85 16 20 C 0.10 0.68 6.57 -2.53 -0.02 0.66 16 21 N -0.62 -7.01 2.75 -170.00 -0.47 -7.48 16 22 C 0.73 10.02 8.16 -86.93 -0.71 9.31 16 23 N -0.86 -7.49 8.83 27.63 0.24 -7.25 16 24 O -0.58 -10.92 16.99 5.28 0.09 -10.83 16 25 C 0.13 2.77 6.62 -67.93 -0.45 2.32 16 26 C -0.20 -4.04 9.81 -26.73 -0.26 -4.30 16 27 C -0.23 -4.41 10.08 -26.73 -0.27 -4.68 16 28 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 29 H 0.10 2.55 5.50 -51.93 -0.29 2.27 16 30 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 4.81 8.47 -40.82 -0.35 4.46 16 36 H 0.08 0.75 7.84 -51.93 -0.41 0.35 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.32 7.30 -51.92 -0.38 -0.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.39 2.10 7.31 -40.82 -0.30 1.80 16 43 H 0.41 3.12 8.93 -40.82 -0.36 2.75 16 44 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 45 H 0.10 2.20 6.96 -51.93 -0.36 1.84 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.08 1.71 7.99 -51.93 -0.41 1.30 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -36.36 390.92 -9.94 -46.31 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.86 Total: 10.72 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.74 Total: 6.78 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.39 Total: -64.25 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.18 Total: -21.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.36 -9.94 -46.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752290744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.561 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds