Wall clock time and date at job start Fri Apr 10 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48496 * 109.47262 * 274.92261 * 3 2 1 5 5 H 1.48500 * 109.46672 * 34.92220 * 3 2 1 6 6 H 1.48500 * 109.47255 * 154.91919 * 3 2 1 7 7 C 1.38819 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00260 * 189.96759 * 7 2 1 9 9 N 1.36940 * 119.99786 * 9.95896 * 7 2 1 10 10 C 1.47077 * 120.88477 * 214.10383 * 9 7 2 11 11 C 1.53232 * 108.52538 * 231.21400 * 10 9 7 12 12 N 1.46903 * 109.33829 * 306.17292 * 11 10 9 13 13 C 1.46903 * 111.00091 * 187.25643 * 12 11 10 14 14 C 1.52995 * 109.47186 * 169.99734 * 13 12 11 15 15 C 1.53005 * 109.47173 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47391 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00202 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99625 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00113 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.54999 * 56.76038 * 19 17 16 21 21 C 1.52998 * 117.52001 * 202.46269 * 19 17 16 22 22 C 1.52989 * 60.00035 * 107.48269 * 21 19 17 23 23 H 1.09005 * 117.50476 * 107.49294 * 22 21 19 24 24 C 1.50703 * 117.51735 * 252.51941 * 22 21 19 25 25 N 1.34780 * 120.00290 * 209.27804 * 24 22 21 26 26 O 1.21278 * 120.00195 * 29.27880 * 24 22 21 27 27 C 1.46894 * 111.27375 * 63.10373 * 12 11 10 28 28 C 1.47087 * 120.87887 * 34.13643 * 9 7 2 29 29 H 0.96995 * 120.00093 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.62763 * 111.50098 * 10 9 7 31 31 H 1.09002 * 109.78720 * 351.02356 * 10 9 7 32 32 H 1.09001 * 109.49335 * 186.21227 * 11 10 9 33 33 H 1.08996 * 109.51656 * 66.14151 * 11 10 9 34 34 H 1.08998 * 109.46999 * 49.99167 * 13 12 11 35 35 H 1.08998 * 109.46972 * 289.99707 * 13 12 11 36 36 H 1.08998 * 109.47205 * 60.00160 * 14 13 12 37 37 H 1.08995 * 109.47556 * 299.99590 * 14 13 12 38 38 H 1.08997 * 109.47447 * 59.99569 * 15 14 13 39 39 H 1.09010 * 109.46686 * 299.99829 * 15 14 13 40 40 H 0.97000 * 119.99849 * 359.97438 * 16 15 14 41 41 H 1.08998 * 117.49851 * 359.97438 * 21 19 17 42 42 H 1.09003 * 117.50224 * 214.97505 * 21 19 17 43 43 H 0.97009 * 119.99648 * 0.02562 * 25 24 22 44 44 H 0.96994 * 120.00401 * 179.97438 * 25 24 22 45 45 H 1.09002 * 109.49390 * 56.85094 * 27 12 11 46 46 H 1.08992 * 109.49479 * 176.93884 * 27 12 11 47 47 H 1.08995 * 109.62374 * 248.49780 * 28 9 7 48 48 H 1.08997 * 109.62826 * 8.88169 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3937 2.1065 -1.3949 5 1 1.5035 2.6203 0.8015 6 1 3.5959 1.4123 0.5935 7 6 2.0103 -1.2022 -0.0005 8 1 3.0780 -1.2093 0.1613 9 7 1.3411 -2.3791 -0.2062 10 6 1.7644 -3.6160 0.4676 11 6 1.9158 -4.7175 -0.5868 12 7 0.6710 -4.8257 -1.3594 13 6 0.7118 -5.9823 -2.2642 14 6 -0.6774 -6.2107 -2.8630 15 6 -0.6347 -7.4149 -3.8059 16 7 -1.9648 -7.6332 -4.3798 17 6 -2.1673 -8.6462 -5.2454 18 8 -1.2484 -9.3773 -5.5488 19 6 -3.5356 -8.8711 -5.8354 20 1 -3.9631 -8.0218 -6.3684 21 6 -3.8565 -10.2707 -6.3635 22 6 -4.4970 -9.7778 -5.0645 23 1 -5.5571 -9.5251 -5.0902 24 6 -4.0031 -10.3778 -3.7733 25 7 -4.8319 -10.4751 -2.7149 26 8 -2.8598 -10.7730 -3.6865 27 6 0.3939 -3.5877 -2.0998 28 6 0.1802 -2.4399 -1.1073 29 1 -0.4850 0.8400 0.0004 30 1 1.0119 -3.9104 1.1992 31 1 2.7189 -3.4551 0.9688 32 1 2.1215 -5.6674 -0.0935 33 1 2.7391 -4.4696 -1.2566 34 1 1.0178 -6.8683 -1.7077 35 1 1.4260 -5.7919 -3.0653 36 1 -0.9832 -5.3247 -3.4195 37 1 -1.3916 -6.4011 -2.0620 38 1 -0.3286 -8.3011 -3.2499 39 1 0.0794 -7.2240 -4.6070 40 1 -2.6998 -7.0487 -4.1369 41 1 -3.0776 -11.0291 -6.2847 42 1 -4.4950 -10.3423 -7.2440 43 1 -5.7465 -10.1593 -2.7844 44 1 -4.5142 -10.8616 -1.8840 45 1 1.2385 -3.3550 -2.7485 46 1 -0.5040 -3.7183 -2.7037 47 1 -0.7245 -2.6212 -0.5271 48 1 0.0861 -1.4978 -1.6474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752351809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:38 Heat of formation + Delta-G solvation = -22.399123 kcal Electronic energy + Delta-G solvation = -27362.050224 eV Core-core repulsion = 23453.258515 eV Total energy + Delta-G solvation = -3908.791709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78760 -39.12303 -38.21981 -36.39616 -35.54298 -34.27206 -33.98964 -31.99655 -30.45068 -29.92495 -27.11696 -25.63943 -24.81839 -23.52496 -22.76364 -22.23827 -21.10535 -20.80075 -19.88484 -19.08022 -18.24248 -17.55084 -16.80776 -16.26419 -16.08748 -15.91099 -15.27509 -15.04258 -14.85744 -14.56602 -14.30558 -14.18158 -13.89410 -13.60673 -13.42754 -13.33539 -12.99539 -12.84297 -12.35808 -12.07528 -11.79530 -11.51616 -11.29711 -11.12577 -11.10974 -10.98601 -10.83395 -10.75282 -10.39300 -10.36216 -10.24774 -10.05796 -10.04037 -9.92423 -9.75313 -9.55241 -9.11501 -8.50231 -7.79428 -6.54131 -5.77904 -3.27600 1.90196 2.62703 2.85422 3.10021 3.36771 3.43587 3.45315 3.48088 4.18180 4.28988 4.33731 4.40516 4.49870 4.53665 4.77287 4.99643 5.11654 5.18093 5.24691 5.28126 5.41123 5.47804 5.59380 5.67621 5.70808 5.79162 5.93763 5.98406 6.13340 6.20622 6.21081 6.29223 6.37805 6.38542 6.39362 6.58898 6.73130 6.91723 6.97816 7.24903 7.39665 7.63431 7.66901 7.74211 7.83274 7.89802 8.17314 8.49546 9.23745 9.84136 10.47251 11.30707 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.002029 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.901842 B =13799.396815 C =13903.039443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.044 3.956 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.126 4.126 15 C 0.124 3.876 16 N -0.725 5.725 17 C 0.544 3.456 18 O -0.520 6.520 19 C -0.157 4.157 20 H 0.138 0.862 21 C -0.113 4.113 22 C -0.179 4.179 23 H 0.130 0.870 24 C 0.535 3.465 25 N -0.852 5.852 26 O -0.520 6.520 27 C 0.033 3.967 28 C 0.182 3.818 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.401 0.599 44 H 0.404 0.596 45 H 0.023 0.977 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 -19.067 -10.412 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.258 5.258 13 C -0.070 4.070 14 C -0.164 4.164 15 C 0.000 4.000 16 N -0.377 5.377 17 C 0.329 3.671 18 O -0.395 6.395 19 C -0.179 4.179 20 H 0.156 0.844 21 C -0.151 4.151 22 C -0.200 4.200 23 H 0.148 0.852 24 C 0.319 3.681 25 N -0.415 5.415 26 O -0.395 6.395 27 C -0.097 4.097 28 C 0.056 3.944 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.229 0.771 44 H 0.235 0.765 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.521 -19.711 -10.395 25.561 hybrid contribution 0.141 1.412 -0.073 1.421 sum -12.380 -18.299 -10.468 24.448 Atomic orbital electron populations 1.69979 1.05269 1.25446 1.54002 1.25253 0.95420 0.98434 1.00146 0.86255 0.79169 0.83661 0.77555 1.21476 1.21644 1.20336 1.19158 0.90589 0.83824 1.44895 0.92011 1.44027 1.34271 1.04532 1.49002 1.20986 0.97928 0.86447 0.92404 1.22617 0.89550 0.99496 0.96831 1.61938 1.35203 1.03050 1.25566 1.21938 0.95138 0.94882 0.95078 1.21778 0.99002 0.96990 0.98636 1.21315 0.83684 0.98467 0.96562 1.45855 1.12848 1.32634 1.46372 1.19317 0.88797 0.80167 0.78856 1.90703 1.43863 1.45148 1.59808 1.22296 0.94435 0.97422 1.03752 0.84410 1.23033 1.01966 0.95882 0.94186 1.22333 0.99421 1.05595 0.92694 0.85199 1.19647 0.85450 0.78368 0.84630 1.43759 1.15976 1.66447 1.15363 1.90880 1.17965 1.47447 1.83239 1.22950 0.98701 0.91108 0.96892 1.20783 0.89392 0.94276 0.89996 0.93622 0.95717 0.92651 0.92060 0.95501 0.91204 0.95333 0.91084 0.90553 0.91428 0.91710 0.76738 0.86465 0.86730 0.77066 0.76488 0.95830 0.92049 0.95535 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.29 55.49 0.63 -25.67 16 2 C 0.01 0.18 5.05 -17.43 -0.09 0.10 16 3 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -7.09 9.58 -15.06 -0.14 -7.24 16 8 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -15.31 3.01 -172.02 -0.52 -15.83 16 10 C 0.15 3.25 6.69 -3.61 -0.02 3.23 16 11 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 12 N -0.53 -9.54 4.63 -234.33 -1.08 -10.62 16 13 C 0.06 0.84 4.96 -3.82 -0.02 0.82 16 14 C -0.13 -1.53 5.26 -26.73 -0.14 -1.67 16 15 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 16 N -0.73 -7.76 5.56 -60.29 -0.33 -8.09 16 17 C 0.54 6.65 5.56 -10.99 -0.06 6.59 16 18 O -0.52 -8.71 16.09 -3.53 -0.06 -8.77 16 19 C -0.16 -1.21 6.18 -91.78 -0.57 -1.77 16 20 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.11 -0.80 9.57 -26.74 -0.26 -1.06 16 22 C -0.18 -1.10 6.19 -91.78 -0.57 -1.67 16 23 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 24 C 0.54 4.86 7.52 -10.98 -0.08 4.78 16 25 N -0.85 -4.40 8.87 31.22 0.28 -4.12 16 26 O -0.52 -7.51 15.46 -3.53 -0.05 -7.56 16 27 C 0.03 0.64 5.46 -3.70 -0.02 0.61 16 28 C 0.18 4.40 5.34 -3.60 -0.02 4.38 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 32 H 0.06 0.98 7.99 -51.93 -0.41 0.57 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 35 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 41 H 0.12 1.19 7.67 -51.93 -0.40 0.79 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.40 0.71 8.83 -40.82 -0.36 0.34 16 44 H 0.40 2.03 8.93 -40.82 -0.36 1.66 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 2.14 6.47 -51.93 -0.34 1.81 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -36.99 387.03 -10.27 -47.26 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.90 Total: 1.49 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -2.03 Total: 9.36 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -1.03 Total: -64.34 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.11 Total: -16.33 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.99 -10.27 -47.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752351809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.858 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds