Wall clock time and date at job start Fri Apr 10 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47546 * 265.13405 * 3 2 1 5 5 H 1.48503 * 109.47086 * 25.13352 * 3 2 1 6 6 H 1.48503 * 109.46941 * 145.13057 * 3 2 1 7 7 C 1.38813 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99010 * 348.10394 * 7 2 1 9 9 N 1.36927 * 120.00468 * 168.10286 * 7 2 1 10 10 C 1.47085 * 120.88405 * 148.16381 * 9 7 2 11 11 C 1.53238 * 108.52141 * 128.79183 * 10 9 7 12 12 N 1.46901 * 109.34010 * 53.83390 * 11 10 9 13 13 C 1.46893 * 111.00011 * 172.74380 * 12 11 10 14 14 C 1.52997 * 109.47359 * 169.99776 * 13 12 11 15 15 C 1.53003 * 109.47682 * 179.97438 * 14 13 12 16 16 N 1.46490 * 109.47365 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99960 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00212 * 5.21001 * 17 16 15 19 19 C 1.50705 * 119.99787 * 185.20744 * 17 16 15 20 20 C 1.50694 * 115.55207 * 40.51824 * 19 17 16 21 21 N 1.34782 * 120.00272 * 56.38954 * 20 19 17 22 22 O 1.21283 * 120.00359 * 236.39525 * 20 19 17 23 23 C 1.52999 * 117.49923 * 254.80536 * 19 17 16 24 24 C 1.52997 * 60.00033 * 252.51341 * 23 19 17 25 25 C 1.46896 * 111.26597 * 296.89214 * 12 11 10 26 26 C 1.47082 * 120.88236 * 328.13976 * 9 7 2 27 27 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.62381 * 9.08629 * 10 9 7 29 29 H 1.08987 * 109.79107 * 248.60318 * 10 9 7 30 30 H 1.09000 * 109.49268 * 173.79403 * 11 10 9 31 31 H 1.09003 * 109.49400 * 293.87194 * 11 10 9 32 32 H 1.09001 * 109.47246 * 290.00400 * 13 12 11 33 33 H 1.09003 * 109.47458 * 49.99964 * 13 12 11 34 34 H 1.09001 * 109.47451 * 300.00499 * 14 13 12 35 35 H 1.09002 * 109.46901 * 60.00213 * 14 13 12 36 36 H 1.09001 * 109.47102 * 300.00733 * 15 14 13 37 37 H 1.09002 * 109.46762 * 60.00149 * 15 14 13 38 38 H 0.97006 * 120.00013 * 359.97438 * 16 15 14 39 39 H 0.97002 * 119.99664 * 5.05159 * 21 20 19 40 40 H 0.96997 * 120.00219 * 185.05342 * 21 20 19 41 41 H 1.08995 * 117.49959 * 0.02562 * 23 19 17 42 42 H 1.08999 * 117.50038 * 145.02719 * 23 19 17 43 43 H 1.09003 * 117.50094 * 252.50750 * 24 23 19 44 44 H 1.08999 * 117.50187 * 107.49066 * 24 23 19 45 45 H 1.08999 * 109.49875 * 303.14236 * 25 12 11 46 46 H 1.09007 * 109.49125 * 183.06442 * 25 12 11 47 47 H 1.08999 * 109.62519 * 350.91869 * 26 9 7 48 48 H 1.09004 * 109.62320 * 111.49922 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6006 1.9871 -1.3949 5 1 1.4000 2.6802 0.5947 6 1 3.4925 1.4720 0.8005 7 6 2.0103 -1.2021 -0.0005 8 1 1.4876 -2.1274 0.1919 9 7 3.3575 -1.2147 -0.2450 10 6 4.2292 -2.2200 0.3819 11 6 5.0724 -2.8833 -0.7123 12 7 5.7734 -1.8468 -1.4819 13 6 6.7242 -2.4460 -2.4278 14 6 7.2481 -1.3665 -3.3770 15 6 8.2389 -1.9904 -4.3619 16 7 8.7410 -0.9566 -5.2703 17 6 9.6318 -1.2773 -6.2295 18 8 9.9464 -2.4358 -6.4022 19 6 10.2371 -0.1962 -7.0875 20 6 10.6077 1.0743 -6.3668 21 7 11.4487 1.0314 -5.3144 22 8 10.1493 2.1355 -6.7337 23 6 9.7329 -0.0713 -8.5266 24 6 11.1287 -0.6341 -8.2511 25 6 4.8248 -0.9656 -2.1759 26 6 3.9714 -0.2237 -1.1418 27 1 -0.4850 0.8401 0.0004 28 1 3.6194 -2.9730 0.8812 29 1 4.8844 -1.7391 1.1080 30 1 5.8015 -3.5519 -0.2545 31 1 4.4229 -3.4531 -1.3769 32 1 7.5581 -2.8819 -1.8776 33 1 6.2226 -3.2238 -3.0036 34 1 6.4142 -0.9305 -3.9272 35 1 7.7497 -0.5887 -2.8012 36 1 9.0728 -2.4261 -3.8114 37 1 7.7377 -2.7684 -4.9377 38 1 8.4316 -0.0415 -5.1820 39 1 11.8726 0.1950 -5.0661 40 1 11.6300 1.8368 -4.8053 41 1 8.9632 -0.7707 -8.8527 42 1 9.6692 0.9301 -8.9524 43 1 11.9832 -0.0031 -8.4957 44 1 11.2775 -1.7042 -8.3962 45 1 4.1788 -1.5620 -2.8202 46 1 5.3743 -0.2433 -2.7797 47 1 3.1912 0.3432 -1.6498 48 1 4.6018 0.4522 -0.5639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752352368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:41 Heat of formation + Delta-G solvation = -12.294044 kcal Electronic energy + Delta-G solvation = -27602.942612 eV Core-core repulsion = 23694.589092 eV Total energy + Delta-G solvation = -3908.353520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13554 -39.36170 -38.64225 -36.69545 -35.82595 -34.60429 -34.13600 -32.16967 -30.94091 -30.41047 -27.53518 -26.03134 -24.29702 -23.46712 -23.02916 -22.74439 -22.11949 -21.09465 -19.89835 -19.44483 -18.64826 -17.57325 -16.97705 -16.61626 -16.18892 -16.06340 -15.71200 -15.28967 -14.96439 -14.75364 -14.51616 -14.42246 -14.18972 -14.05210 -13.97562 -13.44509 -13.35168 -12.60056 -12.40402 -12.20010 -12.15443 -11.90546 -11.71489 -11.64552 -11.55987 -11.15491 -11.11918 -10.85196 -10.70044 -10.57676 -10.29760 -10.24512 -10.17299 -10.03498 -9.74651 -9.49768 -9.48946 -8.66280 -8.03516 -6.89435 -5.94036 -3.37766 1.89961 1.96600 2.58042 2.78889 3.29590 3.33169 3.47118 3.50565 4.08306 4.13126 4.18895 4.21965 4.30492 4.51580 4.72147 4.81225 4.93873 4.99601 5.03967 5.14583 5.30582 5.31504 5.36096 5.40820 5.54533 5.58110 5.64063 5.70133 5.84089 5.89861 5.95856 6.02126 6.04173 6.07239 6.20213 6.21034 6.37328 6.55888 6.63435 6.71825 6.86285 7.00405 7.37567 7.42208 7.64083 7.71929 7.99448 8.34064 8.92794 9.70512 10.11742 11.22184 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.002424 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.926647 B =11546.342542 C =12367.868881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.084 0.916 9 N -0.610 5.610 10 C 0.152 3.848 11 C 0.042 3.958 12 N -0.534 5.534 13 C 0.060 3.940 14 C -0.138 4.138 15 C 0.121 3.879 16 N -0.721 5.721 17 C 0.556 3.444 18 O -0.529 6.529 19 C -0.209 4.209 20 C 0.558 3.442 21 N -0.845 5.845 22 O -0.529 6.529 23 C -0.120 4.120 24 C -0.124 4.124 25 C 0.036 3.964 26 C 0.124 3.876 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.404 0.596 40 H 0.407 0.593 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.199 -1.814 -13.477 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.728 3.272 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.335 5.335 10 C 0.026 3.974 11 C -0.087 4.087 12 N -0.259 5.259 13 C -0.069 4.069 14 C -0.176 4.176 15 C -0.002 4.002 16 N -0.372 5.372 17 C 0.340 3.660 18 O -0.405 6.405 19 C -0.215 4.215 20 C 0.341 3.659 21 N -0.409 5.409 22 O -0.404 6.404 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.093 4.093 26 C -0.002 4.002 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.233 0.767 40 H 0.239 0.761 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.126 0.874 44 H 0.138 0.862 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 25.109 -1.697 -13.570 28.591 hybrid contribution 0.049 0.831 -0.071 0.835 sum 25.157 -0.866 -13.641 28.630 Atomic orbital electron populations 1.69759 1.05682 1.26585 1.53855 1.25402 0.95341 0.97862 0.99093 0.86834 0.79276 0.83825 0.77301 1.21467 1.23329 1.19519 1.18919 0.81233 0.94080 1.44604 0.89832 1.44374 1.04602 1.34148 1.50358 1.21005 0.91899 0.92000 0.92502 1.22639 0.96186 0.92916 0.96941 1.62015 1.18289 1.20421 1.25191 1.21966 0.96397 0.95154 0.93340 1.21981 0.98855 0.99667 0.97053 1.21402 0.97511 0.90368 0.90954 1.45974 1.44505 1.13379 1.33336 1.19010 0.79033 0.88135 0.79804 1.90736 1.61571 1.19529 1.68682 1.21572 1.10990 0.96310 0.92654 1.19145 0.78236 0.88549 0.79970 1.43764 1.48427 1.15874 1.32810 1.90798 1.53618 1.30724 1.65250 1.23089 0.97996 1.04334 0.90334 1.23111 0.94596 1.03648 0.94788 1.22763 0.93626 0.96167 0.96728 1.21559 0.95115 0.92221 0.91297 0.92719 0.91629 0.95187 0.91527 0.94886 0.90777 0.94938 0.90551 0.90259 0.91072 0.91114 0.76182 0.76693 0.76110 0.87114 0.86441 0.87358 0.86229 0.94735 0.91203 0.90682 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 13.97 55.49 0.78 -27.50 16 2 C 0.02 0.63 5.36 -17.43 -0.09 0.54 16 3 Si 0.90 22.71 24.21 -169.99 -4.11 18.60 16 4 H -0.29 -6.91 6.40 56.52 0.36 -6.55 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.26 -7.32 10.09 -15.06 -0.15 -7.48 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 9 N -0.61 -14.67 2.79 -172.01 -0.48 -15.15 16 10 C 0.15 3.03 6.69 -3.60 -0.02 3.00 16 11 C 0.04 0.70 5.58 -3.70 -0.02 0.68 16 12 N -0.53 -8.41 4.78 -234.33 -1.12 -9.53 16 13 C 0.06 0.71 5.27 -3.83 -0.02 0.69 16 14 C -0.14 -1.36 4.58 -26.73 -0.12 -1.48 16 15 C 0.12 1.09 5.68 -4.05 -0.02 1.07 16 16 N -0.72 -6.20 5.43 -60.30 -0.33 -6.53 16 17 C 0.56 5.31 7.30 -10.98 -0.08 5.23 16 18 O -0.53 -6.60 16.29 5.56 0.09 -6.51 16 19 C -0.21 -1.64 2.39 -156.81 -0.37 -2.01 16 20 C 0.56 4.65 6.86 -10.99 -0.08 4.58 16 21 N -0.85 -4.36 8.84 31.22 0.28 -4.08 16 22 O -0.53 -6.34 17.33 5.55 0.10 -6.24 16 23 C -0.12 -0.83 9.74 -26.73 -0.26 -1.09 16 24 C -0.12 -0.77 9.75 -26.73 -0.26 -1.03 16 25 C 0.04 0.64 5.04 -3.70 -0.02 0.62 16 26 C 0.12 2.71 4.30 -3.60 -0.02 2.69 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 29 H 0.03 0.60 8.14 -51.94 -0.42 0.17 16 30 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.08 0.81 6.18 -51.93 -0.32 0.49 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.19 8.05 -40.82 -0.33 2.86 16 39 H 0.40 1.45 8.83 -40.82 -0.36 1.09 16 40 H 0.41 1.67 8.93 -40.82 -0.36 1.30 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.12 0.78 7.68 -51.93 -0.40 0.38 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.05 5.73 -51.93 -0.30 0.75 16 47 H 0.08 1.78 4.56 -51.93 -0.24 1.54 16 48 H 0.03 0.73 6.76 -51.93 -0.35 0.38 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -35.09 380.66 -8.36 -43.45 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.75 Total: 1.75 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.54 Total: 6.01 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.87 Total: -62.79 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.19 Total: -12.75 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.11 Total: 18.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.09 -8.36 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752352368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.153 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds