Wall clock time and date at job start Fri Apr 10 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47546 * 265.13405 * 3 2 1 5 5 H 1.48503 * 109.47086 * 25.13352 * 3 2 1 6 6 H 1.48503 * 109.46941 * 145.13057 * 3 2 1 7 7 C 1.38813 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99010 * 348.10394 * 7 2 1 9 9 N 1.36927 * 120.00468 * 168.10286 * 7 2 1 10 10 C 1.47085 * 120.88405 * 148.16381 * 9 7 2 11 11 C 1.53238 * 108.52141 * 128.79183 * 10 9 7 12 12 N 1.46901 * 109.34010 * 53.83390 * 11 10 9 13 13 C 1.46893 * 111.00011 * 172.74380 * 12 11 10 14 14 C 1.52997 * 109.47359 * 169.99776 * 13 12 11 15 15 C 1.53003 * 109.47682 * 179.97438 * 14 13 12 16 16 N 1.46490 * 109.47365 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99960 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00212 * 5.21001 * 17 16 15 19 19 C 1.50705 * 119.99787 * 185.20744 * 17 16 15 20 20 C 1.50694 * 115.55207 * 40.51824 * 19 17 16 21 21 N 1.34782 * 120.00272 * 56.38954 * 20 19 17 22 22 O 1.21283 * 120.00359 * 236.39525 * 20 19 17 23 23 C 1.52999 * 117.49923 * 254.80536 * 19 17 16 24 24 C 1.52997 * 60.00033 * 252.51341 * 23 19 17 25 25 C 1.46896 * 111.26597 * 296.89214 * 12 11 10 26 26 C 1.47082 * 120.88236 * 328.13976 * 9 7 2 27 27 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.62381 * 9.08629 * 10 9 7 29 29 H 1.08987 * 109.79107 * 248.60318 * 10 9 7 30 30 H 1.09000 * 109.49268 * 173.79403 * 11 10 9 31 31 H 1.09003 * 109.49400 * 293.87194 * 11 10 9 32 32 H 1.09001 * 109.47246 * 290.00400 * 13 12 11 33 33 H 1.09003 * 109.47458 * 49.99964 * 13 12 11 34 34 H 1.09001 * 109.47451 * 300.00499 * 14 13 12 35 35 H 1.09002 * 109.46901 * 60.00213 * 14 13 12 36 36 H 1.09001 * 109.47102 * 300.00733 * 15 14 13 37 37 H 1.09002 * 109.46762 * 60.00149 * 15 14 13 38 38 H 0.97006 * 120.00013 * 359.97438 * 16 15 14 39 39 H 0.97002 * 119.99664 * 5.05159 * 21 20 19 40 40 H 0.96997 * 120.00219 * 185.05342 * 21 20 19 41 41 H 1.08995 * 117.49959 * 0.02562 * 23 19 17 42 42 H 1.08999 * 117.50038 * 145.02719 * 23 19 17 43 43 H 1.09003 * 117.50094 * 252.50750 * 24 23 19 44 44 H 1.08999 * 117.50187 * 107.49066 * 24 23 19 45 45 H 1.08999 * 109.49875 * 303.14236 * 25 12 11 46 46 H 1.09007 * 109.49125 * 183.06442 * 25 12 11 47 47 H 1.08999 * 109.62519 * 350.91869 * 26 9 7 48 48 H 1.09004 * 109.62320 * 111.49922 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6006 1.9871 -1.3949 5 1 1.4000 2.6802 0.5947 6 1 3.4925 1.4720 0.8005 7 6 2.0103 -1.2021 -0.0005 8 1 1.4876 -2.1274 0.1919 9 7 3.3575 -1.2147 -0.2450 10 6 4.2292 -2.2200 0.3819 11 6 5.0724 -2.8833 -0.7123 12 7 5.7734 -1.8468 -1.4819 13 6 6.7242 -2.4460 -2.4278 14 6 7.2481 -1.3665 -3.3770 15 6 8.2389 -1.9904 -4.3619 16 7 8.7410 -0.9566 -5.2703 17 6 9.6318 -1.2773 -6.2295 18 8 9.9464 -2.4358 -6.4022 19 6 10.2371 -0.1962 -7.0875 20 6 10.6077 1.0743 -6.3668 21 7 11.4487 1.0314 -5.3144 22 8 10.1493 2.1355 -6.7337 23 6 9.7329 -0.0713 -8.5266 24 6 11.1287 -0.6341 -8.2511 25 6 4.8248 -0.9656 -2.1759 26 6 3.9714 -0.2237 -1.1418 27 1 -0.4850 0.8401 0.0004 28 1 3.6194 -2.9730 0.8812 29 1 4.8844 -1.7391 1.1080 30 1 5.8015 -3.5519 -0.2545 31 1 4.4229 -3.4531 -1.3769 32 1 7.5581 -2.8819 -1.8776 33 1 6.2226 -3.2238 -3.0036 34 1 6.4142 -0.9305 -3.9272 35 1 7.7497 -0.5887 -2.8012 36 1 9.0728 -2.4261 -3.8114 37 1 7.7377 -2.7684 -4.9377 38 1 8.4316 -0.0415 -5.1820 39 1 11.8726 0.1950 -5.0661 40 1 11.6300 1.8368 -4.8053 41 1 8.9632 -0.7707 -8.8527 42 1 9.6692 0.9301 -8.9524 43 1 11.9832 -0.0031 -8.4957 44 1 11.2775 -1.7042 -8.3962 45 1 4.1788 -1.5620 -2.8202 46 1 5.3743 -0.2433 -2.7797 47 1 3.1912 0.3432 -1.6498 48 1 4.6018 0.4522 -0.5639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752352368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:40 Heat of formation + Delta-G solvation = -42.294840 kcal Electronic energy + Delta-G solvation = -27604.243544 eV Core-core repulsion = 23694.589092 eV Total energy + Delta-G solvation = -3909.654452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80206 -40.19211 -39.90067 -37.50562 -36.80806 -35.87208 -34.71157 -33.88945 -32.40848 -31.84298 -28.88599 -27.02210 -25.43362 -24.95038 -24.22845 -23.50890 -22.87726 -22.14930 -21.06388 -20.54176 -19.28443 -18.82783 -18.11141 -17.69912 -17.16856 -16.90630 -16.78347 -16.21074 -16.00722 -15.88380 -15.79806 -15.61209 -15.46545 -15.35679 -14.97643 -14.65572 -14.44298 -14.09799 -13.84882 -13.61719 -13.33023 -12.96454 -12.76599 -12.68634 -12.58960 -12.24900 -12.22235 -12.04852 -11.95137 -11.75122 -11.71532 -11.47821 -11.44560 -11.32112 -10.91113 -10.79150 -10.73870 -10.22871 -9.34486 -8.83484 -8.17943 -5.58222 1.25342 1.28028 1.28447 1.40259 1.50067 1.89749 2.26348 2.39612 2.75375 2.89748 3.10734 3.33256 3.50891 3.58582 3.70859 3.81390 3.87260 3.97690 4.06338 4.20800 4.23930 4.40848 4.48478 4.52728 4.54576 4.60646 4.61344 4.64000 4.70080 4.77878 4.82873 4.85551 4.95565 5.02007 5.08622 5.13640 5.14883 5.28877 5.30233 5.75231 5.85068 6.07644 6.10048 6.21534 6.23100 6.32263 6.89368 6.97832 7.15165 7.57991 8.02471 9.02061 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.002424 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.926647 B =11546.342542 C =12367.868881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.038 4.038 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.312 1.312 6 H -0.263 1.263 7 C -0.250 4.250 8 H 0.048 0.952 9 N -0.626 5.626 10 C 0.145 3.855 11 C 0.052 3.948 12 N -0.538 5.538 13 C 0.061 3.939 14 C -0.127 4.127 15 C 0.128 3.872 16 N -0.715 5.715 17 C 0.559 3.441 18 O -0.560 6.560 19 C -0.216 4.216 20 C 0.561 3.439 21 N -0.827 5.827 22 O -0.569 6.569 23 C -0.122 4.122 24 C -0.110 4.110 25 C 0.047 3.953 26 C 0.118 3.882 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.101 0.899 31 H 0.020 0.980 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.409 0.591 39 H 0.414 0.586 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.020 0.980 46 H 0.101 0.899 47 H 0.054 0.946 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.575 -1.501 -14.137 31.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.233 4.233 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.241 1.241 6 H -0.188 1.188 7 C -0.380 4.380 8 H 0.066 0.934 9 N -0.352 5.352 10 C 0.020 3.980 11 C -0.077 4.077 12 N -0.263 5.263 13 C -0.067 4.067 14 C -0.165 4.165 15 C 0.005 3.995 16 N -0.365 5.365 17 C 0.344 3.656 18 O -0.438 6.438 19 C -0.222 4.222 20 C 0.344 3.656 21 N -0.391 5.391 22 O -0.448 6.448 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.082 4.082 26 C -0.007 4.007 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.244 0.756 39 H 0.245 0.755 40 H 0.247 0.753 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.038 0.962 46 H 0.119 0.881 47 H 0.072 0.928 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 28.557 -1.409 -14.215 31.930 hybrid contribution -0.966 0.598 0.166 1.148 sum 27.591 -0.811 -14.048 30.972 Atomic orbital electron populations 1.69907 1.07435 1.27325 1.56314 1.26093 0.96014 1.01460 0.99688 0.85780 0.77792 0.79147 0.78295 1.19276 1.24131 1.18789 1.18840 0.83330 0.92781 1.43030 0.93423 1.44529 1.03585 1.35485 1.51608 1.21187 0.91760 0.91141 0.93865 1.22484 0.96408 0.92957 0.95833 1.61994 1.17746 1.20416 1.26126 1.22055 0.95835 0.95589 0.93192 1.21848 0.98757 0.99165 0.96714 1.21284 0.97450 0.90101 0.90693 1.45935 1.44054 1.13566 1.32977 1.19192 0.78723 0.87960 0.79677 1.90725 1.62704 1.20815 1.69587 1.21512 1.12180 0.95748 0.92782 1.19175 0.78176 0.87970 0.80236 1.43652 1.47082 1.16755 1.31605 1.90784 1.55433 1.32012 1.66572 1.23138 0.98752 1.04474 0.89620 1.23191 0.94699 1.03826 0.92986 1.22570 0.93630 0.96721 0.95287 1.21592 0.95039 0.92240 0.91856 0.92890 0.92281 0.94489 0.88043 0.96168 0.88726 0.94939 0.91162 0.89542 0.90338 0.92008 0.75588 0.75515 0.75268 0.86937 0.86488 0.85702 0.86375 0.96157 0.88129 0.92806 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.44 13.97 21.65 0.30 -61.13 16 2 C -0.04 -2.26 5.36 84.86 0.45 -1.81 16 3 Si 0.96 47.30 24.21 68.60 1.66 48.96 16 4 H -0.27 -12.11 6.40 99.48 0.64 -11.48 16 5 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 6 H -0.26 -12.51 6.54 99.48 0.65 -11.85 16 7 C -0.25 -14.46 10.09 84.04 0.85 -13.61 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 9 N -0.63 -29.94 2.79 -698.12 -1.94 -31.88 16 10 C 0.15 5.63 6.69 86.35 0.58 6.20 16 11 C 0.05 1.59 5.58 86.38 0.48 2.08 16 12 N -0.54 -15.21 4.78 -895.27 -4.28 -19.48 16 13 C 0.06 1.22 5.27 86.30 0.45 1.68 16 14 C -0.13 -2.06 4.58 30.59 0.14 -1.92 16 15 C 0.13 1.94 5.68 86.38 0.49 2.43 16 16 N -0.71 -10.60 5.43 -463.07 -2.51 -13.11 16 17 C 0.56 9.62 7.30 87.66 0.64 10.25 16 18 O -0.56 -13.04 16.29 -3.03 -0.05 -13.09 16 19 C -0.22 -3.01 2.39 -53.67 -0.13 -3.13 16 20 C 0.56 8.33 6.86 87.65 0.60 8.93 16 21 N -0.83 -6.60 8.84 -173.53 -1.53 -8.14 16 22 O -0.57 -12.96 17.33 -3.04 -0.05 -13.01 16 23 C -0.12 -1.53 9.74 30.59 0.30 -1.23 16 24 C -0.11 -1.15 9.75 30.59 0.30 -0.85 16 25 C 0.05 1.54 5.04 86.38 0.44 1.97 16 26 C 0.12 4.96 4.30 86.35 0.37 5.34 16 27 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.06 2.31 7.95 -2.38 -0.02 2.29 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.07 1.25 6.18 -2.39 -0.01 1.24 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.41 5.44 8.05 -92.70 -0.75 4.69 16 39 H 0.41 1.87 8.83 -92.71 -0.82 1.06 16 40 H 0.41 2.43 8.93 -92.71 -0.83 1.60 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.12 1.50 7.85 -2.39 -0.02 1.48 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 1.32 7.68 -2.39 -0.02 1.31 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 2.67 5.73 -2.38 -0.01 2.66 16 47 H 0.05 2.49 4.56 -2.39 -0.01 2.48 16 48 H 0.04 1.51 6.76 -2.38 -0.02 1.50 16 Total: -1.00 -77.45 380.66 -3.96 -81.41 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -1.52 Total: 13.15 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.96 Total: 16.34 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -9.97 Total: -133.75 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.10 Total: -26.11 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.66 Total: 48.96 kcal Total: -77.45 -3.96 -81.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752352368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.114 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds