Wall clock time and date at job start Fri Apr 10 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47308 * 299.99489 * 3 2 1 6 6 H 1.48500 * 109.47407 * 59.99703 * 3 2 1 7 7 C 1.38809 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99968 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47084 * 35.00071 * 10 9 7 12 12 C 1.52998 * 109.46780 * 154.99965 * 10 9 7 13 13 N 1.46497 * 109.47391 * 304.99410 * 12 10 9 14 14 C 1.34777 * 120.00285 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99882 * 0.28345 * 14 13 12 16 16 C 1.50698 * 120.00177 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.58677 * 349.74096 * 16 14 13 18 18 C 1.53192 * 109.58413 * 110.02223 * 16 14 13 19 19 C 1.53041 * 109.31376 * 174.42374 * 18 16 14 20 20 C 1.53038 * 109.53801 * 298.63425 * 19 18 16 21 21 C 1.53195 * 109.31075 * 61.36445 * 20 19 18 22 22 N 1.46920 * 109.59151 * 229.45561 * 16 14 13 23 23 C 1.34777 * 120.62903 * 6.60188 * 22 16 14 24 24 N 1.34778 * 120.00254 * 185.14474 * 23 22 16 25 25 O 1.21593 * 119.99920 * 5.15034 * 23 22 16 26 26 C 1.52995 * 109.46887 * 274.99668 * 10 9 7 27 27 C 1.52996 * 117.49904 * 128.62194 * 26 10 9 28 28 C 1.52995 * 60.00238 * 252.51182 * 27 26 10 29 29 H 0.96999 * 119.99832 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99882 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46775 * 185.00081 * 12 10 9 32 32 H 1.08996 * 109.47455 * 65.00126 * 12 10 9 33 33 H 0.96999 * 119.99697 * 0.02562 * 13 12 10 34 34 H 1.09000 * 109.49932 * 294.37423 * 18 16 14 35 35 H 1.08996 * 109.50068 * 54.46884 * 18 16 14 36 36 H 1.09002 * 109.45945 * 58.65609 * 19 18 16 37 37 H 1.09000 * 109.46119 * 178.62284 * 19 18 16 38 38 H 1.09002 * 109.49961 * 181.31499 * 20 19 18 39 39 H 1.09000 * 109.49815 * 301.37830 * 20 19 18 40 40 H 1.08999 * 109.58768 * 65.15404 * 21 20 19 41 41 H 1.09002 * 109.58033 * 185.43432 * 21 20 19 42 42 H 0.96996 * 119.99664 * 4.94401 * 24 23 22 43 43 H 0.96998 * 120.00413 * 184.93311 * 24 23 22 44 44 H 1.09006 * 115.55309 * 274.33194 * 26 10 9 45 45 H 1.09001 * 117.49601 * 0.02562 * 27 26 10 46 46 H 1.09001 * 117.50176 * 145.02222 * 27 26 10 47 47 H 1.08999 * 117.49970 * 252.51008 * 28 27 26 48 48 H 1.08998 * 117.52265 * 107.48212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9684 -3.5503 0.5918 12 6 1.1805 -4.7518 0.6111 13 7 0.7329 -4.3346 1.9422 14 6 -0.0566 -5.1465 2.6729 15 8 -0.3924 -6.2247 2.2306 16 6 -0.5165 -4.7176 4.0424 17 1 0.0257 -3.8221 4.3461 18 6 -2.0193 -4.4218 4.0102 19 6 -2.5068 -4.1223 5.4296 20 6 -2.2743 -5.3455 6.3194 21 6 -0.7744 -5.6518 6.3778 22 7 -0.2647 -5.7967 5.0071 23 6 0.4174 -6.8999 4.6407 24 7 0.5520 -7.9266 5.5034 25 8 0.9114 -6.9689 3.5318 26 6 2.4231 -4.0362 -1.4349 27 6 3.8840 -4.3870 -1.7235 28 6 3.3028 -3.0621 -2.2211 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 1.7554 -5.6742 0.6937 32 1 0.3134 -4.9201 -0.0276 33 1 1.0049 -3.4741 2.2977 34 1 -2.2066 -3.5586 3.3715 35 1 -2.5522 -5.2878 3.6176 36 1 -1.9560 -3.2715 5.8308 37 1 -3.5709 -3.8875 5.4061 38 1 -2.6430 -5.1399 7.3243 39 1 -2.8053 -6.2027 5.9054 40 1 -0.2534 -4.8333 6.8744 41 1 -0.6117 -6.5772 6.9304 42 1 0.0986 -7.9024 6.3605 43 1 1.1023 -8.6897 5.2672 44 1 1.6561 -4.5796 -1.9869 45 1 4.5851 -4.3479 -0.8898 46 1 4.0786 -5.1615 -2.4654 47 1 3.1149 -2.9649 -3.2903 48 1 3.6213 -2.1507 -1.7150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752491244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:46 Heat of formation + Delta-G solvation = -7.260720 kcal Electronic energy + Delta-G solvation = -29061.764640 eV Core-core repulsion = 25153.629381 eV Total energy + Delta-G solvation = -3908.135258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83738 -38.49225 -37.46827 -37.17498 -34.45687 -33.77109 -33.20442 -32.45344 -31.41692 -30.62632 -27.96345 -25.72592 -24.15259 -23.38164 -22.23257 -21.62706 -21.49867 -20.16966 -19.66199 -19.34496 -18.32232 -17.21158 -16.96464 -16.23624 -15.78275 -15.16761 -15.04235 -14.78499 -14.69872 -14.53454 -14.36956 -14.09143 -13.80086 -13.58343 -13.36707 -13.16035 -12.99899 -12.71577 -12.42069 -11.79207 -11.63979 -11.32279 -11.25943 -11.08951 -11.03273 -10.84814 -10.83998 -10.79300 -10.61503 -10.05862 -9.87122 -9.66602 -9.60586 -9.43328 -9.24162 -8.99967 -8.91089 -8.67382 -8.07759 -6.98657 -5.77841 -3.06208 2.56622 3.24345 3.40945 3.47798 3.49313 3.60478 3.68850 4.16369 4.48377 4.54952 4.64621 4.65152 4.72020 4.95536 5.09005 5.17930 5.28193 5.33851 5.38726 5.54923 5.58291 5.61922 5.65594 5.68609 5.72233 5.87636 5.93154 5.94004 6.03545 6.15154 6.18673 6.21006 6.29029 6.34604 6.58608 6.64617 6.69899 6.72965 6.88136 6.94271 7.06310 7.23805 7.69816 7.87125 8.25168 8.39650 8.71084 9.04853 9.51804 10.07596 10.44467 11.44273 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.003841 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.828803 B = 7287.982845 C = 8868.548065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.053 0.947 12 C 0.129 3.871 13 N -0.713 5.713 14 C 0.523 3.477 15 O -0.515 6.515 16 C 0.148 3.852 17 H 0.087 0.913 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.137 4.137 21 C 0.115 3.885 22 N -0.620 5.620 23 C 0.696 3.304 24 N -0.872 5.872 25 O -0.543 6.543 26 C -0.157 4.157 27 C -0.196 4.196 28 C -0.157 4.157 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.404 0.596 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.389 0.611 43 H 0.411 0.589 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -11.931 14.834 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.071 0.929 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.308 3.692 15 O -0.390 6.390 16 C 0.040 3.960 17 H 0.105 0.895 18 C -0.163 4.163 19 C -0.155 4.155 20 C -0.176 4.176 21 C -0.008 4.008 22 N -0.361 5.361 23 C 0.396 3.604 24 N -0.444 5.444 25 O -0.417 6.417 26 C -0.179 4.179 27 C -0.234 4.234 28 C -0.194 4.194 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.240 0.760 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.219 0.781 43 H 0.242 0.758 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.061 -12.456 13.714 18.640 hybrid contribution 0.215 1.091 0.435 1.194 sum -1.846 -11.365 14.149 18.241 Atomic orbital electron populations 1.69672 1.05000 1.25402 1.57736 1.24692 0.95420 0.97440 1.03148 0.86208 0.78844 0.84536 0.77137 1.20636 1.21997 1.22002 1.19226 0.90858 0.83921 1.42345 0.91157 1.42455 1.05814 0.99420 1.88019 1.20066 0.94418 0.86195 0.91074 0.92879 1.21435 0.98080 0.97246 0.82799 1.45730 1.51223 1.21533 1.18107 1.19614 0.79377 0.84256 0.85985 1.90666 1.55964 1.20589 1.71808 1.20965 0.97305 0.89530 0.88195 0.89472 1.21850 0.93230 1.03314 0.97907 1.21497 1.01724 0.97630 0.94633 1.21959 0.95718 0.99332 1.00561 1.21630 0.94679 1.01800 0.82680 1.46980 1.59096 1.18792 1.11210 1.15976 0.80287 0.80069 0.84084 1.43185 1.57292 1.22663 1.21241 1.91206 1.51682 1.80425 1.18384 1.23020 0.92116 1.02887 0.99873 1.22939 0.97395 0.99746 1.03306 1.22764 1.03561 0.94052 0.99016 0.93645 0.78073 0.91806 0.92425 0.76040 0.89563 0.90652 0.91305 0.91130 0.90636 0.91357 0.91095 0.90459 0.78071 0.75758 0.89196 0.89590 0.90147 0.90297 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.00 8.63 -15.06 -0.13 -6.13 16 8 H 0.07 1.79 6.91 -52.49 -0.36 1.43 16 9 N -0.72 -16.82 4.54 -53.43 -0.24 -17.06 16 10 C 0.19 3.84 2.70 -67.93 -0.18 3.66 16 11 H 0.05 1.09 7.84 -51.93 -0.41 0.68 16 12 C 0.13 2.48 5.21 -4.04 -0.02 2.46 16 13 N -0.71 -13.23 5.39 -60.30 -0.32 -13.56 16 14 C 0.52 9.69 4.98 -10.99 -0.05 9.63 16 15 O -0.52 -11.33 13.67 -20.18 -0.28 -11.61 16 16 C 0.15 2.09 3.30 -68.76 -0.23 1.87 16 17 H 0.09 1.14 7.96 -51.93 -0.41 0.73 16 18 C -0.12 -1.53 5.35 -26.61 -0.14 -1.67 16 19 C -0.12 -1.04 5.88 -26.69 -0.16 -1.19 16 20 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 21 C 0.12 0.90 6.42 -3.69 -0.02 0.88 16 22 N -0.62 -7.74 2.98 -172.21 -0.51 -8.25 16 23 C 0.70 10.31 8.19 -86.92 -0.71 9.60 16 24 N -0.87 -8.45 8.77 27.64 0.24 -8.20 16 25 O -0.54 -10.87 12.37 -20.45 -0.25 -11.12 16 26 C -0.16 -2.94 5.36 -90.62 -0.49 -3.42 16 27 C -0.20 -3.22 10.18 -26.74 -0.27 -3.49 16 28 C -0.16 -2.92 9.78 -26.73 -0.26 -3.18 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 7.42 8.01 -40.82 -0.33 7.09 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.41 5.59 -51.93 -0.29 0.12 16 42 H 0.39 2.43 6.32 -40.82 -0.26 2.18 16 43 H 0.41 3.61 8.93 -40.82 -0.36 3.24 16 44 H 0.09 1.66 8.11 -51.93 -0.42 1.23 16 45 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.10 2.15 6.23 -51.93 -0.32 1.82 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -34.27 378.82 -10.57 -44.84 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -7.69 Total: 21.25 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.93 Total: 7.46 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.11 Total: -73.13 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.53 Total: -22.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.27 -10.57 -44.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752491244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds