Wall clock time and date at job start Fri Apr 10 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86805 * 120.00096 * 2 1 4 4 H 1.48504 * 109.46512 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47058 * 119.99961 * 3 2 1 6 6 H 1.48498 * 109.47171 * 240.00485 * 3 2 1 7 7 C 1.38811 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00711 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99997 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.47478 * 35.00002 * 10 9 7 12 12 C 1.53002 * 109.47170 * 154.99462 * 10 9 7 13 13 N 1.46496 * 109.47532 * 305.00165 * 12 10 9 14 14 C 1.34773 * 120.00163 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99741 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.58471 * 2.56648 * 16 14 13 18 18 C 1.53192 * 109.58250 * 242.28408 * 16 14 13 19 19 C 1.53043 * 109.30884 * 185.58196 * 18 16 14 20 20 C 1.53039 * 109.54224 * 61.36246 * 19 18 16 21 21 C 1.53184 * 109.31281 * 298.63778 * 20 19 18 22 22 N 1.46924 * 109.58281 * 122.85219 * 16 14 13 23 23 C 1.34776 * 120.63687 * 353.39425 * 22 16 14 24 24 N 1.34773 * 120.00163 * 184.83000 * 23 22 16 25 25 O 1.21589 * 119.99579 * 4.82650 * 23 22 16 26 26 C 1.52997 * 109.47238 * 274.99893 * 10 9 7 27 27 C 1.52994 * 117.50276 * 128.74869 * 26 10 9 28 28 C 1.53002 * 117.50064 * 60.08283 * 26 10 9 29 29 H 0.97001 * 120.00142 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99542 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46839 * 64.99985 * 12 10 9 32 32 H 1.09002 * 109.47034 * 184.99650 * 12 10 9 33 33 H 0.97004 * 119.99806 * 359.97438 * 13 12 10 34 34 H 1.09006 * 109.49993 * 305.52644 * 18 16 14 35 35 H 1.08997 * 109.50146 * 65.59802 * 18 16 14 36 36 H 1.09004 * 109.45925 * 181.38401 * 19 18 16 37 37 H 1.08998 * 109.45783 * 301.35517 * 19 18 16 38 38 H 1.09007 * 109.49172 * 58.58774 * 20 19 18 39 39 H 1.08999 * 109.49631 * 178.64931 * 20 19 18 40 40 H 1.09003 * 109.59140 * 174.41886 * 21 20 19 41 41 H 1.09004 * 109.58600 * 294.84418 * 21 20 19 42 42 H 0.96996 * 120.00097 * 5.19902 * 24 23 22 43 43 H 0.97001 * 119.99603 * 185.20441 * 24 23 22 44 44 H 1.09003 * 115.55159 * 274.41707 * 26 10 9 45 45 H 1.09007 * 117.49875 * 359.97438 * 27 26 10 46 46 H 1.08999 * 117.50202 * 145.02664 * 27 26 10 47 47 H 1.08997 * 117.50005 * 214.98148 * 28 26 10 48 48 H 1.08996 * 117.49605 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6092 13 7 0.7344 -4.3355 1.9408 14 6 -0.0553 -5.1473 2.6713 15 8 -0.3966 -6.2226 2.2261 16 6 -0.5142 -4.7189 4.0414 17 1 -0.1489 -3.7136 4.2513 18 6 0.0285 -5.6923 5.0924 19 6 -0.5532 -5.3344 6.4619 20 6 -2.0772 -5.4676 6.4215 21 6 -2.6437 -4.4916 5.3855 22 7 -1.9824 -4.7307 4.0950 23 6 -2.7085 -4.9601 2.9830 24 7 -4.0527 -4.8721 3.0257 25 8 -2.1507 -5.2464 1.9412 26 6 2.4220 -4.0356 -1.4375 27 6 3.8821 -4.3891 -1.7268 28 6 3.3027 -3.0621 -2.2233 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.3134 -4.9201 -0.0289 32 1 1.7560 -5.6745 0.6909 33 1 1.0071 -3.4753 2.2967 34 1 -0.2602 -6.7100 4.8292 35 1 1.1155 -5.6203 5.1282 36 1 -0.1495 -6.0103 7.2159 37 1 -0.2851 -4.3082 6.7133 38 1 -2.3461 -6.4874 6.1458 39 1 -2.4889 -5.2357 7.4038 40 1 -3.7169 -4.6514 5.2814 41 1 -2.4542 -3.4673 5.7066 42 1 -4.4935 -4.5706 3.8354 43 1 -4.5792 -5.1103 2.2466 44 1 1.6541 -4.5775 -1.9897 45 1 4.5837 -4.3514 -0.8934 46 1 4.0749 -5.1632 -2.4695 47 1 3.1146 -2.9638 -3.2924 48 1 3.6226 -2.1516 -1.7167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752491250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:49 Heat of formation + Delta-G solvation = -9.543803 kcal Electronic energy + Delta-G solvation = -29191.285554 eV Core-core repulsion = 25283.051294 eV Total energy + Delta-G solvation = -3908.234260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76771 -38.45980 -37.44544 -37.13021 -34.42553 -33.70836 -33.17529 -32.42282 -31.37796 -30.61924 -27.94843 -25.70497 -24.15856 -23.34611 -22.20227 -21.62844 -21.48107 -20.16088 -19.64649 -19.27762 -18.27027 -17.17447 -16.85504 -16.21481 -15.64443 -15.19333 -15.03092 -14.89600 -14.63214 -14.52824 -14.26048 -14.07256 -13.77395 -13.58620 -13.25342 -13.17750 -12.99425 -12.56713 -12.51313 -11.82893 -11.62448 -11.33896 -11.26077 -11.06275 -11.03634 -10.88077 -10.81525 -10.79845 -10.59371 -10.10186 -9.85333 -9.55461 -9.52418 -9.41494 -9.19467 -8.98014 -8.89415 -8.59720 -8.10975 -6.96091 -5.74386 -3.03422 2.59785 3.32441 3.42471 3.47869 3.48500 3.60749 3.79078 4.24457 4.49153 4.56026 4.63281 4.65552 4.72237 4.94188 5.09251 5.19821 5.28833 5.35060 5.40475 5.55501 5.57508 5.61783 5.63962 5.68011 5.69561 5.81780 5.86939 5.91920 6.03824 6.15501 6.18319 6.19494 6.33874 6.39026 6.57797 6.64011 6.74402 6.78005 6.90058 7.05195 7.07535 7.26190 7.69951 7.95460 8.27082 8.42415 8.79936 9.09029 9.54215 10.11385 10.47831 11.47267 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.003920 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.323763 B = 7140.661740 C = 8091.724325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.902 3.098 4 H -0.293 1.293 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.052 0.948 12 C 0.128 3.872 13 N -0.714 5.714 14 C 0.526 3.474 15 O -0.517 6.517 16 C 0.147 3.853 17 H 0.086 0.914 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.136 4.136 21 C 0.114 3.886 22 N -0.619 5.619 23 C 0.697 3.303 24 N -0.871 5.871 25 O -0.541 6.541 26 C -0.157 4.157 27 C -0.196 4.196 28 C -0.157 4.157 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.390 0.610 43 H 0.412 0.588 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -10.320 13.859 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.733 3.267 4 H -0.219 1.219 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.356 5.356 10 C 0.083 3.917 11 H 0.070 0.930 12 C 0.004 3.996 13 N -0.367 5.367 14 C 0.310 3.690 15 O -0.392 6.392 16 C 0.039 3.961 17 H 0.104 0.896 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.174 4.174 21 C -0.009 4.009 22 N -0.360 5.360 23 C 0.396 3.604 24 N -0.442 5.442 25 O -0.414 6.414 26 C -0.179 4.179 27 C -0.234 4.234 28 C -0.194 4.194 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.219 0.781 43 H 0.244 0.756 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.581 -11.129 12.890 17.402 hybrid contribution -0.349 1.586 0.110 1.628 sum -3.930 -9.543 12.999 16.598 Atomic orbital electron populations 1.69668 1.05024 1.25574 1.57389 1.24708 0.95387 0.97453 1.03130 0.86359 0.78551 0.83991 0.77800 1.21855 1.21389 1.21330 1.19129 0.90736 0.83969 1.42754 0.91276 1.42457 1.05910 0.99336 1.87938 1.20059 0.94274 0.86331 0.91058 0.92965 1.21435 0.98204 0.96765 0.83218 1.45760 1.51686 1.21479 1.17737 1.19601 0.78239 0.85509 0.85644 1.90651 1.53887 1.23710 1.70904 1.20993 0.79800 1.00208 0.95092 0.89641 1.21837 1.00656 0.99940 0.93668 1.21502 0.95056 1.02202 0.96740 1.21930 0.96465 1.00217 0.98792 1.21643 0.96609 0.99421 0.83268 1.46950 1.04875 1.76800 1.07377 1.16043 0.81913 0.78259 0.84150 1.43168 1.05800 1.75662 1.19535 1.91244 1.68258 1.52340 1.29581 1.23045 0.92031 1.02859 0.99978 1.22953 0.97429 0.99752 1.03297 1.22771 1.03584 0.93999 0.99047 0.93574 0.77917 0.91919 0.92315 0.76125 0.90418 0.90296 0.91284 0.91385 0.91348 0.90636 0.90326 0.91096 0.78064 0.75628 0.89194 0.89595 0.90169 0.90324 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.16 8.63 -15.06 -0.13 -6.29 16 8 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 9 N -0.72 -17.29 4.54 -53.43 -0.24 -17.53 16 10 C 0.19 3.86 2.70 -67.93 -0.18 3.68 16 11 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 12 C 0.13 2.48 5.21 -4.04 -0.02 2.46 16 13 N -0.71 -13.31 5.39 -60.29 -0.32 -13.63 16 14 C 0.53 9.75 4.79 -10.98 -0.05 9.70 16 15 O -0.52 -11.39 13.92 -20.02 -0.28 -11.67 16 16 C 0.15 2.09 3.30 -68.75 -0.23 1.86 16 17 H 0.09 1.13 7.92 -51.93 -0.41 0.72 16 18 C -0.12 -1.37 5.34 -26.61 -0.14 -1.51 16 19 C -0.12 -0.95 5.88 -26.69 -0.16 -1.10 16 20 C -0.14 -1.00 6.08 -26.62 -0.16 -1.16 16 21 C 0.11 0.98 6.34 -3.69 -0.02 0.96 16 22 N -0.62 -8.31 2.98 -172.20 -0.51 -8.82 16 23 C 0.70 11.39 8.40 -86.92 -0.73 10.66 16 24 N -0.87 -9.91 8.74 27.63 0.24 -9.67 16 25 O -0.54 -11.75 12.29 -20.29 -0.25 -12.00 16 26 C -0.16 -2.96 5.36 -90.62 -0.49 -3.45 16 27 C -0.20 -3.18 10.18 -26.69 -0.27 -3.45 16 28 C -0.16 -2.94 9.78 -26.69 -0.26 -3.20 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 30 H 0.39 10.45 7.80 -40.82 -0.32 10.14 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 7.47 7.98 -40.82 -0.33 7.14 16 34 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.51 5.74 -51.93 -0.30 0.21 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 3.03 6.42 -40.82 -0.26 2.77 16 43 H 0.41 4.40 8.93 -40.82 -0.36 4.03 16 44 H 0.09 1.70 8.11 -51.93 -0.42 1.28 16 45 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.10 2.16 6.23 -51.93 -0.32 1.83 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -35.20 378.96 -10.59 -45.78 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -7.69 Total: 23.04 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -2.94 Total: 8.78 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -0.11 Total: -76.47 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.53 Total: -23.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.20 -10.59 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752491250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.241 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds