Wall clock time and date at job start Fri Apr 10 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48498 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47371 * 300.00196 * 3 2 1 6 6 H 1.48505 * 109.47393 * 60.00010 * 3 2 1 7 7 C 1.38805 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99974 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47518 * 324.99933 * 10 9 7 12 12 C 1.53001 * 109.46884 * 204.99876 * 10 9 7 13 13 N 1.46498 * 109.47292 * 55.00359 * 12 10 9 14 14 C 1.34777 * 120.00045 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99886 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.70085 * 351.46460 * 16 14 13 18 18 C 1.53627 * 109.66312 * 112.05432 * 16 14 13 19 19 C 1.53036 * 109.24445 * 174.54668 * 18 16 14 20 20 C 1.53036 * 109.54089 * 298.51599 * 19 18 16 21 21 C 1.53191 * 109.31417 * 61.35718 * 20 19 18 22 22 N 1.46922 * 109.58504 * 231.10461 * 16 14 13 23 23 C 1.34769 * 120.63420 * 6.63038 * 22 16 14 24 24 N 1.34776 * 120.00181 * 185.23913 * 23 22 16 25 25 O 1.21587 * 120.00198 * 5.23851 * 23 22 16 26 26 C 1.52999 * 109.47070 * 84.99913 * 10 9 7 27 27 C 1.53001 * 117.50082 * 8.74719 * 26 10 9 28 28 C 1.53005 * 117.49945 * 300.08345 * 26 10 9 29 29 H 0.96993 * 119.99601 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99512 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46927 * 294.99858 * 12 10 9 32 32 H 1.09008 * 109.46880 * 175.00434 * 12 10 9 33 33 H 0.97001 * 119.99578 * 359.97438 * 13 12 10 34 34 H 1.09002 * 109.63251 * 54.55745 * 18 16 14 35 35 H 1.09003 * 109.43010 * 294.42268 * 18 16 14 36 36 H 1.09000 * 109.46218 * 178.48659 * 19 18 16 37 37 H 1.09005 * 109.45802 * 58.53540 * 19 18 16 38 38 H 1.09006 * 109.49533 * 301.41347 * 20 19 18 39 39 H 1.08995 * 109.52709 * 181.33394 * 20 19 18 40 40 H 1.09001 * 109.59107 * 185.58050 * 21 20 19 41 41 H 1.09011 * 109.70167 * 65.22648 * 21 20 19 42 42 H 0.97003 * 120.00089 * 174.88129 * 24 23 22 43 43 H 0.97001 * 120.00055 * 354.60456 * 24 23 22 44 44 H 1.08997 * 115.55241 * 154.41625 * 26 10 9 45 45 H 1.09002 * 117.49678 * 359.97438 * 27 26 10 46 46 H 1.08999 * 117.50131 * 145.02154 * 27 26 10 47 47 H 1.08999 * 117.50059 * 214.97977 * 28 26 10 48 48 H 1.09000 * 117.49413 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9688 -3.5500 -0.5921 12 6 1.1809 -4.7516 -0.6133 13 7 0.7344 -4.3338 -1.9446 14 6 -0.0555 -5.1449 -2.6757 15 8 -0.3961 -6.2210 -2.2318 16 6 -0.5153 -4.7149 -4.0449 17 1 -0.2429 -3.6731 -4.2136 18 6 0.1413 -5.6024 -5.1132 19 6 -0.4343 -5.2486 -6.4863 20 6 -1.9405 -5.5193 -6.4951 21 6 -2.6201 -4.6363 -5.4438 22 7 -1.9735 -4.8652 -4.1444 23 6 -2.7046 -5.2010 -3.0633 24 7 -4.0252 -5.4387 -3.1901 25 8 -2.1729 -5.2895 -1.9734 26 6 2.4221 -4.0368 1.4339 27 6 1.8134 -3.2009 2.5616 28 6 3.2996 -3.0621 2.2219 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 0.3135 -4.9200 0.0247 32 1 1.7559 -5.6740 -0.6958 33 1 1.0065 -3.4730 -2.2994 34 1 -0.0607 -6.6507 -4.8932 35 1 1.2179 -5.4315 -5.1149 36 1 0.0487 -5.8577 -7.2505 37 1 -0.2536 -4.1941 -6.6951 38 1 -2.1230 -6.5684 -6.2620 39 1 -2.3462 -5.2896 -7.4804 40 1 -3.6768 -4.8954 -5.3767 41 1 -2.5181 -3.5876 -5.7231 42 1 -4.5369 -5.7523 -2.4280 43 1 -4.4646 -5.2925 -4.0424 44 1 2.5634 -5.1020 1.6171 45 1 1.1541 -2.3798 2.2800 46 1 1.5547 -3.7160 3.4867 47 1 4.0179 -3.4860 2.9236 48 1 3.6180 -2.1503 1.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752491263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:52 Heat of formation + Delta-G solvation = -5.806714 kcal Electronic energy + Delta-G solvation = -29290.547241 eV Core-core repulsion = 25382.475033 eV Total energy + Delta-G solvation = -3908.072208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77736 -38.47864 -37.46921 -37.17160 -34.24117 -33.68238 -33.09532 -32.42538 -31.37781 -30.53095 -28.04670 -25.71713 -24.14887 -23.40596 -22.40495 -21.53645 -21.38001 -20.15050 -19.48228 -19.01717 -18.21973 -17.16014 -16.88497 -16.26120 -15.71730 -15.14181 -15.01647 -14.84090 -14.64801 -14.52059 -14.35121 -14.14784 -13.67760 -13.56274 -13.23890 -13.20717 -12.89788 -12.59220 -12.42028 -11.81823 -11.65203 -11.33237 -11.12880 -11.07704 -11.05955 -10.89314 -10.85128 -10.76391 -10.43014 -10.03435 -9.61602 -9.60821 -9.48212 -9.35339 -9.11293 -8.94735 -8.90055 -8.61584 -8.09742 -6.97563 -5.76316 -3.05949 2.61217 3.33303 3.41349 3.48070 3.49831 3.61072 3.74910 4.21314 4.55784 4.56289 4.62584 4.70031 4.73396 4.93633 5.08107 5.19831 5.27929 5.36976 5.52452 5.55185 5.56409 5.63900 5.67212 5.73359 5.80116 5.84804 5.85889 5.95713 6.13452 6.14587 6.23004 6.27227 6.39403 6.46140 6.64151 6.76373 6.77057 6.94414 7.04595 7.06741 7.25901 7.37302 7.71913 7.95936 8.26061 8.40809 8.80184 9.06789 9.52861 10.09620 10.46051 11.45102 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003832 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.471363 B = 7305.759865 C = 8058.174346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.192 3.808 11 H 0.055 0.945 12 C 0.128 3.872 13 N -0.713 5.713 14 C 0.526 3.474 15 O -0.520 6.520 16 C 0.147 3.853 17 H 0.087 0.913 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.136 4.136 21 C 0.115 3.885 22 N -0.620 5.620 23 C 0.698 3.302 24 N -0.872 5.872 25 O -0.540 6.540 26 C -0.176 4.176 27 C -0.163 4.163 28 C -0.177 4.177 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.404 0.596 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.411 0.589 43 H 0.389 0.611 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -10.847 -14.020 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.073 0.927 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.311 3.689 15 O -0.395 6.395 16 C 0.039 3.961 17 H 0.105 0.895 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.174 4.174 21 C -0.009 4.009 22 N -0.361 5.361 23 C 0.397 3.603 24 N -0.443 5.443 25 O -0.413 6.413 26 C -0.198 4.198 27 C -0.200 4.200 28 C -0.214 4.214 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.243 0.757 43 H 0.219 0.781 44 H 0.103 0.897 45 H 0.136 0.864 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.805 -11.507 -13.006 17.778 hybrid contribution -0.294 1.404 -0.191 1.447 sum -4.100 -10.103 -13.197 17.118 Atomic orbital electron populations 1.69695 1.04987 1.25392 1.57455 1.24706 0.95373 0.97452 1.03096 0.86216 0.78846 0.84605 0.77100 1.20619 1.22071 1.22014 1.19228 0.90886 0.83905 1.42666 0.91077 1.42499 1.05953 0.99423 1.87931 1.19998 0.94033 0.86274 0.91568 0.92744 1.21426 0.98411 0.96653 0.83129 1.45744 1.51585 1.21444 1.17751 1.19602 0.78251 0.85459 0.85632 1.90656 1.54093 1.23667 1.71113 1.21060 0.79863 1.00324 0.94875 0.89479 1.21913 1.00081 1.00495 0.93569 1.21499 0.95205 1.02105 0.96696 1.21940 0.96246 1.00550 0.98712 1.21631 0.96378 0.99937 0.82926 1.46927 1.05694 1.74880 1.08578 1.15951 0.81689 0.78190 0.84421 1.43151 1.08406 1.75980 1.16765 1.91197 1.68839 1.56331 1.24965 1.23075 1.05729 0.95262 0.95698 1.22902 0.96591 1.03571 0.96909 1.22848 0.93463 1.01934 1.03106 0.93643 0.77783 0.91781 0.92516 0.76080 0.90555 0.90246 0.91273 0.91341 0.91347 0.90653 0.90408 0.91048 0.75672 0.78089 0.89715 0.86388 0.91371 0.91127 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.07 8.15 -15.06 -0.12 -6.19 16 8 H 0.07 1.80 6.91 -52.49 -0.36 1.44 16 9 N -0.72 -16.87 3.08 -53.43 -0.16 -17.03 16 10 C 0.19 3.80 2.86 -67.93 -0.19 3.61 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C 0.13 2.47 5.22 -4.04 -0.02 2.45 16 13 N -0.71 -13.18 5.39 -60.29 -0.32 -13.51 16 14 C 0.53 9.72 4.88 -10.99 -0.05 9.66 16 15 O -0.52 -11.40 13.87 -20.04 -0.28 -11.68 16 16 C 0.15 2.08 3.32 -68.53 -0.23 1.85 16 17 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 18 C -0.12 -1.34 5.37 -26.39 -0.14 -1.48 16 19 C -0.12 -0.93 5.88 -26.69 -0.16 -1.09 16 20 C -0.14 -0.98 6.08 -26.61 -0.16 -1.14 16 21 C 0.11 0.98 6.43 -3.71 -0.02 0.96 16 22 N -0.62 -8.28 2.97 -171.97 -0.51 -8.79 16 23 C 0.70 11.36 8.20 -86.92 -0.71 10.65 16 24 N -0.87 -9.76 8.79 27.63 0.24 -9.52 16 25 O -0.54 -11.75 12.46 -20.31 -0.25 -12.01 16 26 C -0.18 -3.31 5.70 -90.62 -0.52 -3.83 16 27 C -0.16 -3.26 9.74 -26.69 -0.26 -3.52 16 28 C -0.18 -3.32 9.87 -26.69 -0.26 -3.58 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.39 10.27 7.80 -40.82 -0.32 9.95 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.40 7.39 8.00 -40.82 -0.33 7.06 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.49 5.57 -51.93 -0.29 0.20 16 41 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.41 4.32 8.93 -40.82 -0.36 3.95 16 43 H 0.39 2.93 6.29 -40.82 -0.26 2.67 16 44 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 45 H 0.12 2.82 6.68 -51.93 -0.35 2.47 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.10 2.12 6.22 -51.93 -0.32 1.79 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -34.55 376.10 -10.50 -45.05 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -7.63 Total: 23.54 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.95 Total: 7.97 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -0.03 Total: -75.26 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.53 Total: -23.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.55 -10.50 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752491263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.241 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds