Wall clock time and date at job start Fri Apr 10 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48498 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47371 * 300.00196 * 3 2 1 6 6 H 1.48505 * 109.47393 * 60.00010 * 3 2 1 7 7 C 1.38805 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99974 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47518 * 324.99933 * 10 9 7 12 12 C 1.53001 * 109.46884 * 204.99876 * 10 9 7 13 13 N 1.46498 * 109.47292 * 55.00359 * 12 10 9 14 14 C 1.34777 * 120.00045 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99886 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.70085 * 351.46460 * 16 14 13 18 18 C 1.53627 * 109.66312 * 112.05432 * 16 14 13 19 19 C 1.53036 * 109.24445 * 174.54668 * 18 16 14 20 20 C 1.53036 * 109.54089 * 298.51599 * 19 18 16 21 21 C 1.53191 * 109.31417 * 61.35718 * 20 19 18 22 22 N 1.46922 * 109.58504 * 231.10461 * 16 14 13 23 23 C 1.34769 * 120.63420 * 6.63038 * 22 16 14 24 24 N 1.34776 * 120.00181 * 185.23913 * 23 22 16 25 25 O 1.21587 * 120.00198 * 5.23851 * 23 22 16 26 26 C 1.52999 * 109.47070 * 84.99913 * 10 9 7 27 27 C 1.53001 * 117.50082 * 8.74719 * 26 10 9 28 28 C 1.53005 * 117.49945 * 300.08345 * 26 10 9 29 29 H 0.96993 * 119.99601 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99512 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46927 * 294.99858 * 12 10 9 32 32 H 1.09008 * 109.46880 * 175.00434 * 12 10 9 33 33 H 0.97001 * 119.99578 * 359.97438 * 13 12 10 34 34 H 1.09002 * 109.63251 * 54.55745 * 18 16 14 35 35 H 1.09003 * 109.43010 * 294.42268 * 18 16 14 36 36 H 1.09000 * 109.46218 * 178.48659 * 19 18 16 37 37 H 1.09005 * 109.45802 * 58.53540 * 19 18 16 38 38 H 1.09006 * 109.49533 * 301.41347 * 20 19 18 39 39 H 1.08995 * 109.52709 * 181.33394 * 20 19 18 40 40 H 1.09001 * 109.59107 * 185.58050 * 21 20 19 41 41 H 1.09011 * 109.70167 * 65.22648 * 21 20 19 42 42 H 0.97003 * 120.00089 * 174.88129 * 24 23 22 43 43 H 0.97001 * 120.00055 * 354.60456 * 24 23 22 44 44 H 1.08997 * 115.55241 * 154.41625 * 26 10 9 45 45 H 1.09002 * 117.49678 * 359.97438 * 27 26 10 46 46 H 1.08999 * 117.50131 * 145.02154 * 27 26 10 47 47 H 1.08999 * 117.50059 * 214.97977 * 28 26 10 48 48 H 1.09000 * 117.49413 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9688 -3.5500 -0.5921 12 6 1.1809 -4.7516 -0.6133 13 7 0.7344 -4.3338 -1.9446 14 6 -0.0555 -5.1449 -2.6757 15 8 -0.3961 -6.2210 -2.2318 16 6 -0.5153 -4.7149 -4.0449 17 1 -0.2429 -3.6731 -4.2136 18 6 0.1413 -5.6024 -5.1132 19 6 -0.4343 -5.2486 -6.4863 20 6 -1.9405 -5.5193 -6.4951 21 6 -2.6201 -4.6363 -5.4438 22 7 -1.9735 -4.8652 -4.1444 23 6 -2.7046 -5.2010 -3.0633 24 7 -4.0252 -5.4387 -3.1901 25 8 -2.1729 -5.2895 -1.9734 26 6 2.4221 -4.0368 1.4339 27 6 1.8134 -3.2009 2.5616 28 6 3.2996 -3.0621 2.2219 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 0.3135 -4.9200 0.0247 32 1 1.7559 -5.6740 -0.6958 33 1 1.0065 -3.4730 -2.2994 34 1 -0.0607 -6.6507 -4.8932 35 1 1.2179 -5.4315 -5.1149 36 1 0.0487 -5.8577 -7.2505 37 1 -0.2536 -4.1941 -6.6951 38 1 -2.1230 -6.5684 -6.2620 39 1 -2.3462 -5.2896 -7.4804 40 1 -3.6768 -4.8954 -5.3767 41 1 -2.5181 -3.5876 -5.7231 42 1 -4.5369 -5.7523 -2.4280 43 1 -4.4646 -5.2925 -4.0424 44 1 2.5634 -5.1020 1.6171 45 1 1.1541 -2.3798 2.2800 46 1 1.5547 -3.7160 3.4867 47 1 4.0179 -3.4860 2.9236 48 1 3.6180 -2.1503 1.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752491263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:51 Heat of formation + Delta-G solvation = -30.966315 kcal Electronic energy + Delta-G solvation = -29291.638244 eV Core-core repulsion = 25382.475033 eV Total energy + Delta-G solvation = -3909.163210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94761 -39.93641 -38.97093 -38.26230 -35.79823 -35.02025 -34.83677 -33.33865 -32.70254 -31.98030 -29.75167 -26.78018 -25.58710 -24.87651 -23.83275 -22.98812 -22.47938 -21.45562 -20.69467 -20.39148 -19.52700 -19.02457 -17.98663 -17.56663 -17.04415 -16.67664 -16.41521 -16.18705 -16.01877 -15.85133 -15.46037 -15.36501 -15.10190 -14.93027 -14.55093 -14.44863 -14.23089 -13.93430 -13.71857 -13.31414 -12.90125 -12.83546 -12.65521 -12.54444 -12.49760 -12.11783 -12.10515 -11.91709 -11.72878 -11.62126 -11.57798 -11.04427 -10.98131 -10.85685 -10.65616 -10.62388 -10.36453 -9.75540 -9.51267 -8.98235 -7.86136 -5.14847 1.48593 1.50501 1.51208 1.58965 2.08527 2.31527 2.44547 2.59473 3.13228 3.31931 3.47939 3.73740 3.84635 3.89569 3.91892 4.02687 4.09284 4.13689 4.25123 4.29151 4.32989 4.50780 4.52798 4.60555 4.60911 4.70272 4.86203 4.90684 4.95141 4.95290 5.04733 5.11892 5.18055 5.20407 5.29370 5.43362 5.45573 5.50049 5.66386 5.66793 5.72677 5.82122 6.04164 6.32580 6.78384 6.96615 7.40081 7.51413 7.78163 8.11287 8.37913 9.36754 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003832 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.471363 B = 7305.759865 C = 8058.174346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.070 4.070 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.304 1.304 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.719 5.719 10 C 0.195 3.805 11 H 0.064 0.936 12 C 0.141 3.859 13 N -0.714 5.714 14 C 0.520 3.480 15 O -0.557 6.557 16 C 0.145 3.855 17 H 0.095 0.905 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.130 4.130 21 C 0.105 3.895 22 N -0.620 5.620 23 C 0.683 3.317 24 N -0.851 5.851 25 O -0.605 6.605 26 C -0.171 4.171 27 C -0.176 4.176 28 C -0.163 4.163 29 H 0.246 0.754 30 H 0.370 0.630 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.409 0.591 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 -11.296 -16.158 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.232 1.232 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.359 5.359 10 C 0.086 3.914 11 H 0.082 0.918 12 C 0.016 3.984 13 N -0.367 5.367 14 C 0.307 3.693 15 O -0.435 6.435 16 C 0.037 3.963 17 H 0.113 0.887 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.169 4.169 21 C -0.017 4.017 22 N -0.360 5.360 23 C 0.383 3.617 24 N -0.423 5.423 25 O -0.484 6.484 26 C -0.193 4.193 27 C -0.213 4.213 28 C -0.200 4.200 29 H 0.055 0.945 30 H 0.202 0.798 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.248 0.752 43 H 0.243 0.757 44 H 0.129 0.871 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.122 0.878 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.820 -11.973 -15.224 19.572 hybrid contribution -0.621 1.460 0.473 1.656 sum -3.442 -10.513 -14.751 18.438 Atomic orbital electron populations 1.69859 1.06551 1.25376 1.60125 1.25369 0.95966 1.00419 1.04442 0.85249 0.78504 0.80934 0.76138 1.18943 1.22443 1.23186 1.19513 0.91170 0.84465 1.39632 0.90282 1.42551 1.05120 1.00357 1.87837 1.20118 0.93843 0.84814 0.92662 0.91803 1.21222 0.96981 0.97001 0.83198 1.45778 1.51910 1.21507 1.17469 1.20365 0.77174 0.84750 0.86998 1.90619 1.55100 1.25368 1.72400 1.21131 0.80904 1.01278 0.92979 0.88731 1.21902 1.00546 0.98478 0.94391 1.21527 0.95733 1.03113 0.94733 1.21936 0.95631 0.99639 0.99647 1.22039 0.97535 1.01205 0.80872 1.47068 1.05284 1.73985 1.09654 1.16377 0.82937 0.78147 0.84254 1.42896 1.06806 1.74623 1.17983 1.91151 1.70432 1.59203 1.27573 1.23063 1.05265 0.96669 0.94271 1.22757 0.97062 1.03104 0.98408 1.22843 0.93036 1.01037 1.03044 0.94528 0.79763 0.95111 0.91061 0.76049 0.92533 0.89435 0.89410 0.90267 0.92198 0.87408 0.88123 0.89801 0.75244 0.75742 0.87089 0.90666 0.89304 0.87830 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 45.22 29.55 68.60 2.03 47.25 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.22 -11.18 8.15 84.03 0.69 -10.50 16 8 H 0.08 3.94 6.91 -2.91 -0.02 3.92 16 9 N -0.72 -34.64 3.08 -322.95 -0.99 -35.63 16 10 C 0.19 7.70 2.86 44.99 0.13 7.83 16 11 H 0.06 2.45 8.08 -2.39 -0.02 2.43 16 12 C 0.14 5.54 5.22 86.38 0.45 5.99 16 13 N -0.71 -27.25 5.39 -463.06 -2.49 -29.74 16 14 C 0.52 19.84 4.88 87.66 0.43 20.27 16 15 O -0.56 -25.48 13.87 21.44 0.30 -25.19 16 16 C 0.14 4.08 3.32 44.38 0.15 4.23 16 17 H 0.09 2.49 7.95 -2.39 -0.02 2.47 16 18 C -0.11 -2.38 5.37 30.82 0.17 -2.22 16 19 C -0.11 -1.46 5.88 30.62 0.18 -1.28 16 20 C -0.13 -1.44 6.08 30.67 0.19 -1.25 16 21 C 0.10 1.52 6.43 86.36 0.56 2.07 16 22 N -0.62 -16.17 2.97 -816.26 -2.42 -18.59 16 23 C 0.68 22.57 8.20 179.06 1.47 24.04 16 24 N -0.85 -18.56 8.79 -184.75 -1.62 -20.19 16 25 O -0.61 -27.63 12.46 20.49 0.26 -27.38 16 26 C -0.17 -6.25 5.70 -10.79 -0.06 -6.31 16 27 C -0.18 -7.02 9.74 30.62 0.30 -6.72 16 28 C -0.16 -5.82 9.87 30.62 0.30 -5.52 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.37 20.52 7.80 -92.71 -0.72 19.80 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.40 15.16 8.00 -92.71 -0.74 14.42 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.95 5.57 -2.39 -0.01 0.94 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.42 8.67 8.93 -92.71 -0.83 7.84 16 43 H 0.41 5.38 6.29 -92.71 -0.58 4.80 16 44 H 0.11 3.52 8.11 -2.39 -0.02 3.50 16 45 H 0.07 3.71 6.68 -2.39 -0.02 3.69 16 46 H 0.09 3.13 8.14 -2.39 -0.02 3.12 16 47 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 48 H 0.08 3.27 6.22 -2.39 -0.01 3.25 16 Total: -1.00 -79.47 376.10 -1.13 -80.60 By element: Atomic # 1 Polarization: 61.70 SS G_CDS: -1.86 Total: 59.84 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 5.40 Total: 27.24 kcal Atomic # 7 Polarization: -155.11 SS G_CDS: -7.25 Total: -162.36 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: 0.55 Total: -52.56 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -79.47 -1.13 -80.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752491263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.630 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds