Wall clock time and date at job start Fri Apr 10 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47103 * 299.99538 * 3 2 1 6 6 H 1.48494 * 109.47266 * 59.99958 * 3 2 1 7 7 C 1.38941 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84927 * 23.80491 * 14 13 12 16 16 C 1.53774 * 113.61273 * 155.00113 * 14 13 12 17 17 C 1.53782 * 87.08079 * 139.98339 * 16 14 13 18 18 H 1.08996 * 113.61646 * 89.11999 * 17 16 14 19 19 N 1.46509 * 113.61324 * 220.02072 * 17 16 14 20 20 C 1.34773 * 119.99782 * 205.00004 * 19 17 16 21 21 O 1.21282 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.50698 * 119.99769 * 179.97438 * 20 19 17 23 23 N 1.46906 * 109.47056 * 179.97438 * 22 20 19 24 24 C 1.48536 * 110.99991 * 52.60319 * 23 22 20 25 25 C 1.54929 * 103.22669 * 159.72123 * 24 23 22 26 26 C 1.54601 * 102.92422 * 322.58709 * 25 24 23 27 27 C 1.47900 * 111.00026 * 169.99989 * 23 22 20 28 28 C 1.53773 * 113.61451 * 252.49922 * 14 13 12 29 29 H 0.97001 * 119.99428 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99192 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46763 * 60.00720 * 12 10 9 32 32 H 1.08995 * 109.47483 * 300.00377 * 12 10 9 33 33 H 1.00901 * 111.00067 * 303.95401 * 13 12 10 34 34 H 1.08999 * 113.61402 * 254.52887 * 16 14 13 35 35 H 1.08997 * 113.61783 * 25.43488 * 16 14 13 36 36 H 0.96997 * 119.99569 * 24.99181 * 19 17 16 37 37 H 1.08997 * 109.47300 * 299.99448 * 22 20 19 38 38 H 1.09002 * 109.47419 * 60.00394 * 22 20 19 39 39 H 1.09004 * 110.66685 * 278.15466 * 24 23 22 40 40 H 1.09001 * 110.66460 * 41.28366 * 24 23 22 41 41 H 1.09004 * 110.72821 * 204.22874 * 25 24 23 42 42 H 1.09003 * 110.88010 * 81.01506 * 25 24 23 43 43 H 1.08999 * 110.30785 * 263.03999 * 26 25 24 44 44 H 1.08991 * 110.30876 * 140.87366 * 26 25 24 45 45 H 1.09000 * 109.91475 * 333.50840 * 27 23 22 46 46 H 1.09000 * 109.91942 * 94.80226 * 27 23 22 47 47 H 1.09006 * 113.61615 * 334.56574 * 28 14 13 48 48 H 1.09003 * 113.61832 * 105.46900 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.4980 -7.2708 0.0016 15 1 0.4885 -7.2048 -0.4042 16 6 2.3271 -8.4211 -0.5934 17 6 1.7622 -9.3052 0.5310 18 1 0.8246 -9.7963 0.2710 19 7 2.7474 -10.2248 1.1056 20 6 2.3398 -11.3634 1.7004 21 8 1.1574 -11.6265 1.7604 22 6 3.3532 -12.3096 2.2909 23 7 2.6610 -13.4658 2.8758 24 6 1.7374 -14.0869 1.8921 25 6 1.5257 -15.5140 2.4566 26 6 2.9215 -15.8758 3.0144 27 6 3.6226 -14.5252 3.2507 28 6 1.5763 -8.0141 1.3455 29 1 -0.4849 0.8401 -0.0004 30 1 0.3534 -2.3905 -0.0002 31 1 0.6168 -4.9208 -0.8887 32 1 0.6174 -4.9204 0.8913 33 1 2.8332 -5.9128 -0.7798 34 1 2.0038 -8.7225 -1.5898 35 1 3.4036 -8.2639 -0.5261 36 1 3.6930 -10.0142 1.0578 37 1 4.0318 -12.6496 1.5086 38 1 3.9211 -11.7960 3.0667 39 1 0.7930 -13.5438 1.8550 40 1 2.1978 -14.1279 0.9049 41 1 1.2367 -16.2037 1.6635 42 1 0.7813 -15.5104 3.2529 43 1 3.4772 -16.4686 2.2879 44 1 2.8241 -16.4208 3.9532 45 1 4.5138 -14.4554 2.6271 46 1 3.8930 -14.4262 4.3020 47 1 2.4476 -7.7455 1.9429 48 1 0.6470 -7.9868 1.9145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752773968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:53 Heat of formation + Delta-G solvation = -65.569975 kcal Electronic energy + Delta-G solvation = -26449.931345 eV Core-core repulsion = 22539.267607 eV Total energy + Delta-G solvation = -3910.663738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34582 -40.34468 -39.78403 -38.70784 -36.13062 -35.43078 -33.85927 -33.25645 -32.95283 -29.72469 -28.65487 -27.65915 -26.68660 -25.97770 -23.80509 -22.25205 -21.69028 -21.52817 -21.17675 -20.54793 -19.89132 -18.09319 -17.94090 -17.42441 -16.87124 -16.82716 -16.68114 -16.40390 -16.21832 -16.03916 -15.73467 -15.15412 -15.08410 -14.78218 -14.30909 -14.29297 -14.08152 -13.52593 -13.42948 -13.36366 -13.24799 -13.12171 -13.03985 -12.87969 -12.48554 -12.41336 -12.29699 -12.15706 -12.12212 -11.93621 -11.84070 -11.53639 -11.50154 -11.45228 -10.62234 -10.33270 -10.01904 -9.99282 -9.37814 -9.31909 -8.47028 -5.95985 1.36786 1.42122 1.56400 1.62034 2.04759 2.09703 2.29599 2.96899 3.10146 3.20444 3.48966 3.55318 3.66962 3.72850 3.77952 3.95887 3.97631 4.06805 4.09964 4.30447 4.31026 4.34986 4.43644 4.46032 4.55538 4.61059 4.65722 4.75258 4.81247 4.85563 4.94590 4.99592 5.02311 5.08214 5.12577 5.17605 5.27044 5.31745 5.41007 5.62590 5.89308 5.92607 5.97832 6.14566 6.43640 6.59443 6.60909 7.12211 7.29677 7.55899 8.10750 8.70590 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.045903 B = 0.001569 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.837760 B =17839.414243 C =18007.218248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.666 5.666 14 C 0.057 3.943 15 H 0.085 0.915 16 C -0.131 4.131 17 C 0.131 3.869 18 H 0.104 0.896 19 N -0.707 5.707 20 C 0.509 3.491 21 O -0.567 6.567 22 C 0.029 3.971 23 N -0.525 5.525 24 C 0.033 3.967 25 C -0.126 4.126 26 C -0.128 4.128 27 C 0.032 3.968 28 C -0.138 4.138 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.348 0.652 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -30.186 1.534 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.298 5.298 14 C -0.053 4.053 15 H 0.103 0.897 16 C -0.169 4.169 17 C 0.025 3.975 18 H 0.122 0.878 19 N -0.359 5.359 20 C 0.297 3.703 21 O -0.445 6.445 22 C -0.102 4.102 23 N -0.251 5.251 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.166 4.166 27 C -0.095 4.095 28 C -0.178 4.178 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.313 -30.006 2.706 30.434 hybrid contribution 0.178 1.072 -1.482 1.838 sum 4.490 -28.934 1.224 29.306 Atomic orbital electron populations 1.69685 1.06871 1.29235 1.50385 1.26052 0.96539 1.02456 0.96243 0.84855 0.78051 0.77032 0.78300 1.19714 1.19547 1.19707 1.19724 0.92746 0.84045 1.49886 0.90238 1.41955 1.09341 1.04778 1.65036 1.20883 0.88268 0.86153 0.82144 1.90483 1.15782 1.87975 1.56673 1.21594 0.94174 0.88255 1.02842 1.60197 1.18508 1.00169 1.50949 1.22923 0.97497 0.87184 0.97676 0.89703 1.23519 1.01353 0.93524 0.98542 1.22155 0.93355 0.87683 0.94270 0.87759 1.45866 1.11055 1.20779 1.58156 1.20998 0.89909 0.82208 0.77222 1.90644 1.19742 1.75298 1.58862 1.22302 0.94745 0.92609 1.00576 1.64646 1.16479 1.06241 1.37703 1.23378 0.98249 0.94933 0.92900 1.22521 0.97804 0.95360 1.00725 1.22411 0.95512 0.96519 1.02180 1.23010 0.94189 0.90227 1.02079 1.23547 1.02310 0.94820 0.97107 0.91315 0.77015 0.91391 0.88393 0.83234 0.89264 0.88050 0.74801 0.89468 0.85991 0.89975 0.94474 0.90109 0.91591 0.90290 0.90230 0.92272 0.89771 0.89767 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 3 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.57 5.29 -306.99 -1.62 -31.19 16 10 C 0.44 20.79 7.82 87.66 0.69 21.47 16 11 O -0.62 -34.26 15.78 -3.07 -0.05 -34.30 16 12 C 0.06 2.17 6.01 85.56 0.51 2.68 16 13 N -0.67 -19.93 6.18 -492.87 -3.05 -22.98 16 14 C 0.06 1.26 4.14 45.44 0.19 1.45 16 15 H 0.09 1.73 7.87 -2.39 -0.02 1.71 16 16 C -0.13 -2.12 7.40 31.12 0.23 -1.89 16 17 C 0.13 2.39 4.24 45.52 0.19 2.58 16 18 H 0.10 2.17 7.47 -2.39 -0.02 2.15 16 19 N -0.71 -10.89 5.35 -440.03 -2.36 -13.25 16 20 C 0.51 9.81 7.54 87.66 0.66 10.47 16 21 O -0.57 -15.62 13.12 -3.03 -0.04 -15.66 16 22 C 0.03 0.38 5.52 85.56 0.47 0.86 16 23 N -0.53 -8.96 5.26 -887.57 -4.67 -13.63 16 24 C 0.03 0.60 5.30 86.65 0.46 1.06 16 25 C -0.13 -1.72 7.06 31.80 0.22 -1.49 16 26 C -0.13 -1.30 6.93 31.47 0.22 -1.08 16 27 C 0.03 0.37 6.70 86.45 0.58 0.95 16 28 C -0.14 -3.04 7.68 31.12 0.24 -2.81 16 29 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 31 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.35 10.66 8.24 -89.69 -0.74 9.92 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 36 H 0.42 4.16 8.73 -92.71 -0.81 3.35 16 37 H 0.09 0.77 7.81 -2.39 -0.02 0.75 16 38 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 2.01 5.97 -2.38 -0.01 2.00 16 40 H 0.04 0.64 8.02 -2.39 -0.02 0.62 16 41 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.50 7.57 -2.39 -0.02 0.48 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.02 389.13 -4.82 -77.84 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: -1.29 Total: 42.04 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 5.94 Total: 15.74 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -11.41 Total: -130.63 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.09 Total: -49.97 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.02 -4.82 -77.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752773968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.272 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds