Wall clock time and date at job start Fri Apr 10 2020 18:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48501 * 109.47171 * 240.00280 * 3 2 1 5 5 H 1.48498 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47195 * 120.00149 * 3 2 1 7 7 C 1.38804 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00477 * 163.08538 * 7 2 1 9 9 N 1.36937 * 119.99863 * 343.08279 * 7 2 1 10 10 C 1.46930 * 120.63112 * 331.83151 * 9 7 2 11 11 C 1.53188 * 108.77499 * 233.58506 * 10 9 7 12 12 C 1.53045 * 109.31562 * 305.36280 * 11 10 9 13 13 C 1.53042 * 109.53260 * 61.36487 * 12 11 10 14 14 H 1.08997 * 109.50068 * 58.62232 * 13 12 11 15 15 C 1.53007 * 109.49442 * 178.68203 * 13 12 11 16 16 N 1.46496 * 109.46970 * 184.99951 * 15 13 12 17 17 C 1.34780 * 119.99645 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00403 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99928 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.47433 * 179.97438 * 19 17 16 21 21 C 1.47185 * 111.00328 * 188.93474 * 20 19 17 22 22 C 1.52994 * 108.72016 * 167.62030 * 21 20 19 23 23 N 1.46009 * 110.03862 * 50.30445 * 22 21 20 24 24 C 1.33717 * 122.92839 * 341.84426 * 23 22 21 25 25 O 1.21277 * 118.62409 * 181.68587 * 24 23 22 26 26 C 1.46904 * 110.99592 * 66.04378 * 20 19 17 27 27 C 1.46927 * 120.63360 * 151.80617 * 9 7 2 28 28 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58924 * 113.79901 * 10 9 7 30 30 H 1.08998 * 109.58452 * 353.37587 * 10 9 7 31 31 H 1.09004 * 109.50029 * 185.41377 * 11 10 9 32 32 H 1.08997 * 109.52671 * 65.33204 * 11 10 9 33 33 H 1.08996 * 109.45842 * 301.34874 * 12 11 10 34 34 H 1.09001 * 109.44671 * 181.37767 * 12 11 10 35 35 H 1.08997 * 109.47333 * 305.00099 * 15 13 12 36 36 H 1.09004 * 109.46927 * 65.00159 * 15 13 12 37 37 H 0.96996 * 120.00336 * 359.97438 * 16 15 13 38 38 H 1.09006 * 109.46867 * 299.99734 * 19 17 16 39 39 H 1.09004 * 109.47221 * 59.99517 * 19 17 16 40 40 H 1.09004 * 109.59674 * 287.41096 * 21 20 19 41 41 H 1.09005 * 109.59458 * 47.86274 * 21 20 19 42 42 H 1.08999 * 109.37771 * 290.13458 * 22 21 20 43 43 H 1.09001 * 109.37857 * 170.47733 * 22 21 20 44 44 H 0.97001 * 118.53835 * 161.81781 * 23 22 21 45 45 H 1.08998 * 109.38567 * 293.81758 * 26 20 19 46 46 H 1.09000 * 109.39006 * 53.51481 * 26 20 19 47 47 H 1.09005 * 109.58293 * 6.63087 * 27 9 7 48 48 H 1.08995 * 109.58901 * 246.20108 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0553 -1.2221 -0.2727 9 7 1.3701 -2.3625 0.3440 10 6 0.2262 -2.3411 1.2659 11 6 0.4976 -3.3213 2.4113 12 6 0.8120 -4.7025 1.8318 13 6 2.0673 -4.6181 0.9605 14 1 2.9025 -4.2556 1.5598 15 6 2.3997 -6.0058 0.4082 16 7 3.6657 -5.9484 -0.3267 17 6 4.1601 -7.0609 -0.9051 18 8 3.5572 -8.1095 -0.8168 19 6 5.4627 -7.0021 -1.6606 20 7 5.7818 -8.3343 -2.1910 21 6 7.1427 -8.3673 -2.7506 22 6 7.5357 -9.8246 -3.0007 23 7 6.4856 -10.5036 -3.7544 24 6 5.2367 -10.0344 -3.8454 25 8 4.4180 -10.6781 -4.4668 26 6 4.8052 -8.7432 -3.2094 27 6 1.8137 -3.6526 -0.2014 28 1 -0.4850 0.8400 0.0004 29 1 -0.6770 -2.6411 0.7345 30 1 0.0993 -1.3357 1.6675 31 1 -0.3830 -3.3869 3.0504 32 1 1.3471 -2.9707 2.9973 33 1 -0.0282 -5.0420 1.2262 34 1 0.9815 -5.4075 2.6456 35 1 2.4899 -6.7130 1.2326 36 1 1.6043 -6.3297 -0.2631 37 1 4.1478 -5.1097 -0.3977 38 1 5.3730 -6.2944 -2.4848 39 1 6.2580 -6.6787 -0.9890 40 1 7.1649 -7.8159 -3.6907 41 1 7.8397 -7.9170 -2.0437 42 1 7.6792 -10.3295 -2.0454 43 1 8.4659 -9.8561 -3.5679 44 1 6.7036 -11.3319 -4.2098 45 1 3.8300 -8.8784 -2.7418 46 1 4.7341 -7.9694 -3.9739 47 1 2.7345 -3.5126 -0.7678 48 1 1.0400 -4.0595 -0.8524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752784364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:59 Heat of formation + Delta-G solvation = -71.875791 kcal Electronic energy + Delta-G solvation = -27836.103878 eV Core-core repulsion = 23925.166700 eV Total energy + Delta-G solvation = -3910.937178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53218 -40.60863 -39.36629 -38.11439 -36.23737 -35.49260 -34.64186 -32.29410 -32.07740 -30.77266 -29.87589 -27.26126 -26.91782 -25.41845 -23.96742 -23.74848 -22.44743 -21.45356 -20.55000 -20.25378 -18.70968 -18.44359 -18.26363 -17.47641 -17.06095 -16.84787 -16.60238 -16.47753 -15.89419 -15.71767 -15.54243 -15.31522 -15.06754 -14.99381 -14.57705 -14.49224 -13.98393 -13.92709 -13.73879 -13.69345 -13.36794 -13.00794 -12.94285 -12.82919 -12.60473 -12.46860 -12.38158 -12.28260 -11.96408 -11.80484 -11.55987 -11.31563 -11.15375 -11.08491 -10.71720 -10.50781 -10.12030 -10.00079 -9.49397 -8.66006 -7.84797 -5.31073 1.47093 1.48839 1.51606 1.57903 1.71329 2.08282 2.30223 2.52996 2.80427 3.30200 3.56238 3.62283 3.83576 3.86675 4.01821 4.03484 4.05883 4.10152 4.29222 4.34701 4.42050 4.43441 4.59794 4.60666 4.64026 4.64401 4.78656 4.79533 4.90549 4.94401 5.02119 5.02620 5.12076 5.25760 5.35410 5.42087 5.53522 5.58953 5.61396 5.67688 5.68845 5.79412 5.94079 6.21601 6.40782 6.64973 7.11723 7.16570 7.34466 7.88267 8.40815 9.21484 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002416 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.861295 B =11586.668827 C =12385.219287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.098 4.098 14 H 0.080 0.920 15 C 0.140 3.860 16 N -0.718 5.718 17 C 0.505 3.495 18 O -0.573 6.573 19 C 0.038 3.962 20 N -0.529 5.529 21 C 0.029 3.971 22 C 0.111 3.889 23 N -0.710 5.710 24 C 0.523 3.477 25 O -0.607 6.607 26 C 0.037 3.963 27 C 0.153 3.847 28 H 0.248 0.752 29 H -0.010 1.010 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.413 0.587 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.058 0.942 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.406 0.594 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.472 -15.128 -1.531 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.119 4.119 14 H 0.098 0.902 15 C 0.015 3.985 16 N -0.371 5.371 17 C 0.293 3.707 18 O -0.452 6.452 19 C -0.092 4.092 20 N -0.255 5.255 21 C -0.098 4.098 22 C -0.012 4.012 23 N -0.361 5.361 24 C 0.310 3.690 25 O -0.489 6.489 26 C -0.093 4.093 27 C 0.028 3.972 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.250 0.750 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.137 0.863 44 H 0.242 0.758 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 18.483 -16.186 -1.286 24.602 hybrid contribution -0.227 1.709 -0.973 1.979 sum 18.255 -14.478 -2.259 23.409 Atomic orbital electron populations 1.70199 1.06876 1.25824 1.55567 1.25843 0.95974 1.01699 1.01449 0.85341 0.77500 0.79139 0.78460 1.19852 1.22639 1.20234 1.19532 0.93015 0.85783 1.40708 0.90801 1.44314 1.35820 1.02391 1.50723 1.20623 0.87720 0.97715 0.89279 1.21995 1.00937 0.95941 0.97994 1.21348 0.96718 0.96718 0.98897 1.21703 0.98947 0.93512 0.97719 0.90152 1.21183 0.85327 0.96517 0.95455 1.45984 1.24270 1.12291 1.54558 1.21134 0.87555 0.82981 0.79079 1.90683 1.62018 1.31197 1.61296 1.22163 0.95803 0.90582 1.00620 1.62131 1.02781 1.26642 1.33966 1.22784 0.89196 0.96888 1.00963 1.21825 0.90050 0.92074 0.97287 1.45579 1.09853 1.27977 1.52677 1.20347 0.82337 0.87386 0.78927 1.90740 1.52461 1.59929 1.45779 1.22298 0.98923 0.93911 0.94217 1.21025 0.97138 0.85645 0.93419 0.94277 0.99216 0.93064 0.91492 0.92635 0.93030 0.90272 0.91293 0.93162 0.75027 0.89101 0.83586 0.92389 0.85079 0.90165 0.86332 0.75808 0.88238 0.90287 0.92019 0.98077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 11.20 21.65 0.24 -54.86 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 3 Si 0.97 43.34 29.59 68.60 2.03 45.37 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.26 -13.60 9.58 84.03 0.81 -12.80 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -29.20 2.99 -699.11 -2.09 -31.29 16 10 C 0.17 8.18 5.30 86.36 0.46 8.64 16 11 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.10 -2.88 2.37 -10.71 -0.03 -2.91 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 3.60 5.07 86.38 0.44 4.04 16 16 N -0.72 -15.31 5.33 -463.05 -2.47 -17.78 16 17 C 0.51 11.38 7.59 87.66 0.67 12.04 16 18 O -0.57 -18.30 14.31 -3.04 -0.04 -18.35 16 19 C 0.04 0.50 5.44 85.56 0.47 0.97 16 20 N -0.53 -8.29 4.47 -905.42 -4.05 -12.34 16 21 C 0.03 0.20 5.60 86.25 0.48 0.68 16 22 C 0.11 0.72 7.39 86.47 0.64 1.36 16 23 N -0.71 -10.54 5.52 -466.07 -2.57 -13.11 16 24 C 0.52 12.68 7.81 87.68 0.69 13.36 16 25 O -0.61 -20.62 17.82 -3.02 -0.05 -20.67 16 26 C 0.04 0.82 5.14 85.42 0.44 1.26 16 27 C 0.15 5.79 5.60 86.36 0.48 6.28 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 7.09 7.71 -92.71 -0.71 6.38 16 38 H 0.09 0.88 8.05 -2.38 -0.02 0.86 16 39 H 0.15 0.92 7.93 -2.39 -0.02 0.90 16 40 H 0.06 0.34 8.08 -2.38 -0.02 0.32 16 41 H 0.13 0.14 7.91 -2.38 -0.02 0.12 16 42 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.41 5.10 8.84 -92.71 -0.82 4.28 16 45 H 0.10 2.96 6.01 -2.39 -0.01 2.95 16 46 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 47 H 0.06 2.14 7.14 -2.38 -0.02 2.12 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -79.60 377.15 -3.27 -82.87 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.56 Total: 17.03 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 6.30 Total: 23.12 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -10.94 Total: -129.37 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.10 Total: -39.02 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -79.60 -3.27 -82.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752784364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.995 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds