Wall clock time and date at job start Fri Apr 10 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.49234 * 304.93262 * 11 10 9 13 13 C 1.53040 * 109.49252 * 184.83936 * 11 10 9 14 14 C 1.53044 * 109.53629 * 178.68072 * 13 11 10 15 15 C 1.53195 * 109.31292 * 61.36013 * 14 13 11 16 16 N 1.46924 * 108.77399 * 305.36923 * 15 14 13 17 17 C 1.34781 * 120.62726 * 233.62459 * 16 15 14 18 18 O 1.21276 * 120.00006 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99953 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47195 * 179.97438 * 19 17 16 21 21 C 1.46383 * 119.32743 * 89.99766 * 20 19 17 22 22 C 1.53238 * 109.15411 * 209.03953 * 21 20 19 23 23 C 1.53241 * 108.56359 * 304.52136 * 22 21 20 24 24 N 1.46383 * 109.15385 * 55.48140 * 23 22 21 25 25 C 1.34135 * 119.33128 * 269.73080 * 20 19 17 26 26 O 1.21583 * 118.69737 * 359.42631 * 25 20 19 27 27 C 1.46926 * 118.74249 * 53.61129 * 16 15 14 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 31 31 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 32 32 H 1.08997 * 109.46111 * 298.70119 * 13 11 10 33 33 H 1.09002 * 109.46117 * 58.66335 * 13 11 10 34 34 H 1.09006 * 109.49491 * 301.41082 * 14 13 11 35 35 H 1.08998 * 109.52844 * 181.33299 * 14 13 11 36 36 H 1.09004 * 109.58436 * 185.57722 * 15 14 13 37 37 H 1.09002 * 109.57954 * 65.15671 * 15 14 13 38 38 H 1.08998 * 109.47085 * 299.99727 * 19 17 16 39 39 H 1.09003 * 109.46835 * 59.99779 * 19 17 16 40 40 H 1.08996 * 109.52732 * 328.94177 * 21 20 19 41 41 H 1.08999 * 109.52065 * 89.07358 * 21 20 19 42 42 H 1.08994 * 109.62388 * 64.24230 * 22 21 20 43 43 H 1.09004 * 109.62353 * 184.61419 * 22 21 20 44 44 H 1.09000 * 109.52844 * 175.38247 * 23 22 21 45 45 H 1.09004 * 109.52432 * 295.57717 * 23 22 21 46 46 H 0.96994 * 119.33387 * 150.96486 * 24 23 22 47 47 H 1.08997 * 109.58221 * 186.60273 * 27 16 15 48 48 H 1.08993 * 109.58966 * 66.17266 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3797 -4.7183 0.8225 13 6 1.8243 -6.1427 0.0946 14 6 0.8287 -7.3048 0.1210 15 6 0.0303 -7.3178 -1.1863 16 7 -0.5873 -5.9982 -1.3764 17 6 -1.9133 -5.8850 -1.5897 18 8 -2.4112 -4.7901 -1.7447 19 6 -2.7771 -7.1190 -1.6357 20 7 -4.1691 -6.7319 -1.8782 21 6 -4.6560 -6.6316 -3.2550 22 6 -5.7748 -5.5864 -3.3177 23 6 -6.8592 -5.9712 -2.3056 24 7 -6.2527 -6.1073 -0.9803 25 6 -4.9730 -6.4819 -0.8339 26 8 -4.5226 -6.5949 0.2898 27 6 0.2679 -4.8045 -1.3291 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0068 30 1 2.6846 -3.7098 -0.9038 31 1 2.6846 -3.7192 0.8761 32 1 2.4900 -6.2542 -0.7613 33 1 2.4107 -6.1459 1.0134 34 1 0.1470 -7.1806 0.9625 35 1 1.3694 -8.2453 0.2266 36 1 -0.7465 -8.0806 -1.1324 37 1 0.6986 -7.5321 -2.0204 38 1 -2.4359 -7.7716 -2.4393 39 1 -2.7075 -7.6469 -0.6846 40 1 -3.8384 -6.3296 -3.9095 41 1 -5.0416 -7.5991 -3.5764 42 1 -5.3730 -4.6045 -3.0679 43 1 -6.1988 -5.5637 -4.3217 44 1 -7.6240 -5.1950 -2.2782 45 1 -7.3111 -6.9189 -2.5986 46 1 -6.7882 -5.9269 -0.1919 47 1 -0.3522 -3.9090 -1.3695 48 1 0.9555 -4.8138 -2.1748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752802151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:06 Heat of formation + Delta-G solvation = -45.647569 kcal Electronic energy + Delta-G solvation = -28733.742003 eV Core-core repulsion = 24823.942165 eV Total energy + Delta-G solvation = -3909.799837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93212 -39.73956 -37.48959 -36.51814 -34.97068 -34.84023 -32.84190 -31.62416 -31.22870 -29.85299 -28.42693 -25.90640 -25.43394 -24.77920 -23.16993 -23.01785 -21.34931 -20.26235 -19.34809 -18.72731 -17.68374 -17.34757 -17.31603 -16.84302 -15.96885 -15.63496 -15.12921 -14.77753 -14.60129 -14.58068 -14.31501 -14.09331 -13.93428 -13.84222 -13.48543 -13.22322 -13.05505 -12.85397 -12.56732 -12.38083 -12.27468 -11.78676 -11.63324 -11.54137 -11.43227 -11.01554 -10.96569 -10.78195 -10.58716 -10.33005 -10.21651 -10.15463 -9.95063 -9.82210 -9.54599 -9.23833 -8.79933 -8.67737 -8.40022 -6.82549 -5.65468 -2.95279 2.43269 2.80676 3.07389 3.30599 3.49618 3.53835 3.56428 3.64925 4.39636 4.48183 4.61453 4.66568 4.76076 4.78953 4.87151 4.96321 5.04475 5.07067 5.13996 5.21586 5.28796 5.33098 5.39580 5.42471 5.48611 5.67597 5.72233 5.85526 5.88133 5.91366 6.03097 6.09348 6.17736 6.21611 6.27942 6.38633 6.47083 6.62569 6.74644 6.85213 6.95081 6.96379 7.59239 7.67997 7.77958 8.38750 8.51982 8.52498 9.62816 10.21752 10.55987 11.56800 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003404 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.893528 B = 8224.069104 C = 9864.358600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.108 4.108 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.107 3.893 16 N -0.612 5.612 17 C 0.493 3.507 18 O -0.520 6.520 19 C 0.115 3.885 20 N -0.606 5.606 21 C 0.117 3.883 22 C -0.155 4.155 23 C 0.112 3.888 24 N -0.737 5.737 25 C 0.717 3.283 26 O -0.594 6.594 27 C 0.122 3.878 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.414 0.586 47 H 0.101 0.899 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -22.531 -8.651 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.173 4.173 15 C -0.016 4.016 16 N -0.347 5.347 17 C 0.279 3.721 18 O -0.395 6.395 19 C -0.012 4.012 20 N -0.343 5.343 21 C -0.006 4.006 22 C -0.194 4.194 23 C -0.013 4.013 24 N -0.395 5.395 25 C 0.418 3.582 26 O -0.472 6.472 27 C 0.001 3.999 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.252 0.748 47 H 0.120 0.880 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.892 -21.902 -8.317 25.431 hybrid contribution 0.006 1.106 0.183 1.121 sum -9.886 -20.796 -8.134 24.421 Atomic orbital electron populations 1.69687 1.05067 1.25556 1.57449 1.24761 0.95472 0.97648 1.03074 0.86209 0.78614 0.84033 0.77442 1.21782 1.21817 1.20808 1.19210 0.90948 0.84218 1.42897 0.91247 1.42430 1.05978 0.99958 1.89426 1.20630 0.92963 0.85224 0.97887 1.21692 0.97964 0.95081 0.98036 0.90791 1.21507 0.97421 0.93768 1.02232 1.21921 0.98689 0.99085 0.97637 1.21733 0.97404 0.84366 0.98092 1.48202 1.07018 1.07903 1.71581 1.21138 0.82293 0.91696 0.76981 1.90753 1.72440 1.27996 1.48328 1.21222 0.80203 0.94990 1.04834 1.46322 1.09625 1.72904 1.05434 1.21552 0.97674 0.98609 0.82751 1.22200 0.96153 1.00710 1.00317 1.21505 0.95748 1.01362 0.82673 1.44873 1.11087 1.74066 1.09467 1.15325 0.81150 0.77560 0.84169 1.90963 1.73841 1.59689 1.22753 1.21682 0.93181 0.88111 0.96971 0.93531 0.78068 0.96331 0.96117 0.91817 0.91554 0.91323 0.90888 0.90327 0.91271 0.87824 0.86729 0.89984 0.91676 0.89584 0.88637 0.89904 0.91924 0.74828 0.88040 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.83 13.06 55.49 0.72 -29.10 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.72 5.38 -59.90 -0.32 -20.05 16 10 C 0.16 3.38 5.65 -4.04 -0.02 3.36 16 11 C -0.11 -1.88 2.38 -90.50 -0.21 -2.09 16 12 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.42 5.17 -26.69 -0.14 -1.56 16 14 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 15 C 0.11 1.07 6.34 -3.71 -0.02 1.04 16 16 N -0.61 -8.93 2.97 -172.77 -0.51 -9.45 16 17 C 0.49 7.96 7.76 -10.98 -0.09 7.87 16 18 O -0.52 -11.02 15.84 5.56 0.09 -10.94 16 19 C 0.11 1.35 4.15 -5.19 -0.02 1.33 16 20 N -0.61 -7.54 2.30 -181.16 -0.42 -7.95 16 21 C 0.12 1.01 6.49 -3.98 -0.03 0.98 16 22 C -0.16 -1.23 6.20 -26.48 -0.16 -1.39 16 23 C 0.11 0.80 7.20 -3.98 -0.03 0.77 16 24 N -0.74 -8.12 5.58 -65.52 -0.37 -8.49 16 25 C 0.72 10.64 8.18 -88.06 -0.72 9.92 16 26 O -0.59 -11.30 16.48 5.29 0.09 -11.22 16 27 C 0.12 2.16 5.52 -3.71 -0.02 2.14 16 28 H 0.25 7.90 8.31 -40.82 -0.34 7.56 16 29 H 0.39 11.18 6.89 -40.82 -0.28 10.90 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.78 7.86 -51.93 -0.41 0.37 16 39 H 0.11 1.37 6.83 -51.93 -0.35 1.02 16 40 H 0.08 0.70 8.06 -51.93 -0.42 0.29 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.41 4.11 8.88 -40.82 -0.36 3.75 16 47 H 0.10 2.27 6.21 -51.93 -0.32 1.95 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -39.83 379.91 -9.81 -49.64 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.92 Total: 10.45 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -1.87 Total: 13.08 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -0.89 Total: -75.03 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.18 Total: -22.15 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.83 -9.81 -49.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752802151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -39.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds