Wall clock time and date at job start Fri Apr 10 2020 18:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.49234 * 304.93262 * 11 10 9 13 13 C 1.53040 * 109.49252 * 184.83936 * 11 10 9 14 14 C 1.53044 * 109.53629 * 178.68072 * 13 11 10 15 15 C 1.53195 * 109.31292 * 61.36013 * 14 13 11 16 16 N 1.46924 * 108.77399 * 305.36923 * 15 14 13 17 17 C 1.34781 * 120.62726 * 233.62459 * 16 15 14 18 18 O 1.21276 * 120.00006 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99953 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47195 * 179.97438 * 19 17 16 21 21 C 1.46383 * 119.32743 * 89.99766 * 20 19 17 22 22 C 1.53238 * 109.15411 * 209.03953 * 21 20 19 23 23 C 1.53241 * 108.56359 * 304.52136 * 22 21 20 24 24 N 1.46383 * 109.15385 * 55.48140 * 23 22 21 25 25 C 1.34135 * 119.33128 * 269.73080 * 20 19 17 26 26 O 1.21583 * 118.69737 * 359.42631 * 25 20 19 27 27 C 1.46926 * 118.74249 * 53.61129 * 16 15 14 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 31 31 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 32 32 H 1.08997 * 109.46111 * 298.70119 * 13 11 10 33 33 H 1.09002 * 109.46117 * 58.66335 * 13 11 10 34 34 H 1.09006 * 109.49491 * 301.41082 * 14 13 11 35 35 H 1.08998 * 109.52844 * 181.33299 * 14 13 11 36 36 H 1.09004 * 109.58436 * 185.57722 * 15 14 13 37 37 H 1.09002 * 109.57954 * 65.15671 * 15 14 13 38 38 H 1.08998 * 109.47085 * 299.99727 * 19 17 16 39 39 H 1.09003 * 109.46835 * 59.99779 * 19 17 16 40 40 H 1.08996 * 109.52732 * 328.94177 * 21 20 19 41 41 H 1.08999 * 109.52065 * 89.07358 * 21 20 19 42 42 H 1.08994 * 109.62388 * 64.24230 * 22 21 20 43 43 H 1.09004 * 109.62353 * 184.61419 * 22 21 20 44 44 H 1.09000 * 109.52844 * 175.38247 * 23 22 21 45 45 H 1.09004 * 109.52432 * 295.57717 * 23 22 21 46 46 H 0.96994 * 119.33387 * 150.96486 * 24 23 22 47 47 H 1.08997 * 109.58221 * 186.60273 * 27 16 15 48 48 H 1.08993 * 109.58966 * 66.17266 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3797 -4.7183 0.8225 13 6 1.8243 -6.1427 0.0946 14 6 0.8287 -7.3048 0.1210 15 6 0.0303 -7.3178 -1.1863 16 7 -0.5873 -5.9982 -1.3764 17 6 -1.9133 -5.8850 -1.5897 18 8 -2.4112 -4.7901 -1.7447 19 6 -2.7771 -7.1190 -1.6357 20 7 -4.1691 -6.7319 -1.8782 21 6 -4.6560 -6.6316 -3.2550 22 6 -5.7748 -5.5864 -3.3177 23 6 -6.8592 -5.9712 -2.3056 24 7 -6.2527 -6.1073 -0.9803 25 6 -4.9730 -6.4819 -0.8339 26 8 -4.5226 -6.5949 0.2898 27 6 0.2679 -4.8045 -1.3291 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0068 30 1 2.6846 -3.7098 -0.9038 31 1 2.6846 -3.7192 0.8761 32 1 2.4900 -6.2542 -0.7613 33 1 2.4107 -6.1459 1.0134 34 1 0.1470 -7.1806 0.9625 35 1 1.3694 -8.2453 0.2266 36 1 -0.7465 -8.0806 -1.1324 37 1 0.6986 -7.5321 -2.0204 38 1 -2.4359 -7.7716 -2.4393 39 1 -2.7075 -7.6469 -0.6846 40 1 -3.8384 -6.3296 -3.9095 41 1 -5.0416 -7.5991 -3.5764 42 1 -5.3730 -4.6045 -3.0679 43 1 -6.1988 -5.5637 -4.3217 44 1 -7.6240 -5.1950 -2.2782 45 1 -7.3111 -6.9189 -2.5986 46 1 -6.7882 -5.9269 -0.1919 47 1 -0.3522 -3.9090 -1.3695 48 1 0.9555 -4.8138 -2.1748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752802151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:05 Heat of formation + Delta-G solvation = -76.826440 kcal Electronic energy + Delta-G solvation = -28735.094020 eV Core-core repulsion = 24823.942165 eV Total energy + Delta-G solvation = -3911.151854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94574 -40.90236 -38.81712 -37.50002 -36.62278 -35.88360 -34.47808 -33.07906 -32.11345 -31.53917 -29.50819 -27.19834 -26.66254 -25.88966 -24.87842 -23.95507 -22.68742 -21.61010 -20.37256 -19.71916 -19.20117 -18.59842 -18.34134 -18.21658 -17.09035 -16.73154 -16.62775 -16.29637 -15.85892 -15.65569 -15.38772 -15.33076 -15.20583 -14.95600 -14.72368 -14.51951 -14.15256 -14.10442 -13.97569 -13.72621 -13.34719 -13.04827 -12.86832 -12.72751 -12.67720 -12.36852 -12.26350 -12.17966 -12.06599 -11.95247 -11.83833 -11.56710 -11.33331 -11.24944 -11.04585 -10.98524 -10.17330 -9.62139 -9.61300 -9.05099 -7.97173 -5.28657 1.42340 1.46291 1.49162 1.54857 1.60732 2.02242 2.22519 2.53098 2.88242 3.35537 3.51398 3.72712 3.76822 3.88299 3.90556 3.93273 4.02834 4.12519 4.19947 4.24755 4.30703 4.36105 4.44986 4.45583 4.62795 4.64433 4.72999 4.75434 4.82676 4.84386 4.90216 4.90692 5.01310 5.11846 5.19406 5.23139 5.30956 5.35276 5.44465 5.50232 5.52148 5.60174 6.05959 6.22578 6.44470 6.75082 7.18684 7.27517 7.49493 8.03914 8.26716 9.26576 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003404 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.893528 B = 8224.069104 C = 9864.358600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.082 4.082 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.750 5.750 10 C 0.158 3.842 11 C -0.096 4.096 12 H 0.039 0.961 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.099 3.901 16 N -0.609 5.609 17 C 0.482 3.518 18 O -0.587 6.587 19 C 0.121 3.879 20 N -0.609 5.609 21 C 0.109 3.891 22 C -0.155 4.155 23 C 0.108 3.892 24 N -0.735 5.735 25 C 0.702 3.298 26 O -0.651 6.651 27 C 0.130 3.870 28 H 0.250 0.750 29 H 0.368 0.632 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.158 0.842 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.416 0.584 47 H 0.042 0.958 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 -25.674 -10.422 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.058 0.942 13 C -0.142 4.142 14 C -0.169 4.169 15 C -0.022 4.022 16 N -0.342 5.342 17 C 0.270 3.730 18 O -0.467 6.467 19 C -0.006 4.006 20 N -0.344 5.344 21 C -0.012 4.012 22 C -0.193 4.193 23 C -0.015 4.015 24 N -0.392 5.392 25 C 0.402 3.598 26 O -0.534 6.534 27 C 0.007 3.993 28 H 0.058 0.942 29 H 0.199 0.801 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.176 0.824 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.060 0.940 43 H 0.151 0.849 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.253 0.747 47 H 0.060 0.940 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.872 -25.122 -10.133 28.505 hybrid contribution -0.284 2.049 0.709 2.186 sum -9.157 -23.074 -9.424 26.553 Atomic orbital electron populations 1.69901 1.07093 1.26048 1.59539 1.25728 0.96339 1.01668 1.03614 0.85037 0.77672 0.78849 0.77575 1.21106 1.22330 1.18860 1.19716 0.91643 0.85285 1.41262 0.90056 1.42715 1.05451 1.01649 1.89431 1.20855 0.93567 0.84209 0.98187 1.21556 0.96950 0.96657 0.96464 0.94245 1.21502 0.97757 0.91508 1.03476 1.21935 0.98039 0.99730 0.97155 1.22197 0.98816 0.82221 0.98934 1.48329 1.06585 1.08793 1.70524 1.22139 0.82906 0.92380 0.75613 1.90725 1.73729 1.30772 1.51440 1.21407 0.79329 0.92989 1.06889 1.46525 1.09512 1.71998 1.06401 1.21902 0.97948 1.00779 0.80608 1.22236 0.96368 0.98211 1.02528 1.21825 0.95592 1.03661 0.80384 1.44985 1.10109 1.72727 1.11360 1.15745 0.82327 0.77663 0.84024 1.90905 1.75259 1.62212 1.25003 1.21307 0.92723 0.87736 0.97524 0.94161 0.80072 0.95113 0.95686 0.89709 0.90970 0.93307 0.86641 0.87021 0.88220 0.82431 0.86755 0.90089 0.87646 0.93999 0.84918 0.88111 0.88714 0.74678 0.93981 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.62 13.06 21.65 0.28 -65.34 16 2 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 3 Si 0.98 48.99 29.55 68.60 2.03 51.02 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.25 -14.86 9.99 84.04 0.84 -14.02 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.75 -42.28 5.38 -343.44 -1.85 -44.12 16 10 C 0.16 6.79 5.65 86.38 0.49 7.28 16 11 C -0.10 -3.44 2.38 -10.72 -0.03 -3.47 16 12 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 13 C -0.10 -2.44 5.17 30.62 0.16 -2.29 16 14 C -0.13 -2.31 6.08 30.67 0.19 -2.12 16 15 C 0.10 1.63 6.34 86.36 0.55 2.18 16 16 N -0.61 -17.68 2.97 -818.92 -2.43 -20.12 16 17 C 0.48 16.00 7.76 87.66 0.68 16.68 16 18 O -0.59 -26.94 15.84 -3.02 -0.05 -26.99 16 19 C 0.12 2.69 4.15 85.63 0.36 3.04 16 20 N -0.61 -14.78 2.30 -845.68 -1.95 -16.72 16 21 C 0.11 1.66 6.49 86.48 0.56 2.22 16 22 C -0.16 -2.26 6.20 30.75 0.19 -2.07 16 23 C 0.11 1.35 7.20 86.48 0.62 1.97 16 24 N -0.74 -16.27 5.58 -479.84 -2.68 -18.95 16 25 C 0.70 21.36 8.18 179.45 1.47 22.82 16 26 O -0.65 -26.07 16.48 -3.98 -0.07 -26.14 16 27 C 0.13 4.82 5.52 86.36 0.48 5.30 16 28 H 0.25 16.24 8.31 -92.70 -0.77 15.46 16 29 H 0.37 23.02 6.89 -92.71 -0.64 22.39 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.15 5.93 -2.38 -0.01 1.14 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.16 1.71 7.86 -2.39 -0.02 1.69 16 39 H 0.11 2.60 6.83 -2.39 -0.02 2.59 16 40 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.42 8.54 8.88 -92.71 -0.82 7.72 16 47 H 0.04 2.07 6.21 -2.39 -0.01 2.05 16 48 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -97.01 379.91 -0.18 -97.19 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.49 Total: 37.24 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 7.02 Total: 32.92 kcal Atomic # 7 Polarization: -156.63 SS G_CDS: -8.62 Total: -165.25 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.13 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -97.01 -0.18 -97.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752802151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.367 kcal (2) G-P(sol) polarization free energy of solvation -97.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds