Wall clock time and date at job start Fri Apr 10 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.88722 * 308.88170 * 11 10 9 13 13 C 1.55160 * 111.00386 * 72.80359 * 11 10 9 14 14 C 1.54318 * 102.94392 * 153.57569 * 13 11 10 15 15 N 1.47019 * 107.27266 * 337.80790 * 14 13 11 16 16 C 1.34776 * 125.65134 * 178.97695 * 15 14 13 17 17 O 1.21281 * 120.00426 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.99901 * 359.95336 * 16 15 14 19 19 N 1.46499 * 109.47331 * 180.02562 * 18 16 15 20 20 C 1.34781 * 119.99994 * 180.02562 * 19 18 16 21 21 O 1.21586 * 119.99825 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00007 * 179.97438 * 20 19 18 23 23 C 1.47028 * 125.64538 * 359.69241 * 22 20 19 24 24 C 1.54320 * 107.27585 * 180.96567 * 23 22 20 25 25 C 1.55155 * 102.86135 * 22.52801 * 24 23 22 26 26 C 1.47425 * 125.65212 * 180.02562 * 22 20 19 27 27 C 1.47429 * 108.70067 * 358.94004 * 15 14 13 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 32 32 H 1.09007 * 110.71711 * 271.94171 * 13 11 10 33 33 H 1.09003 * 110.71678 * 35.21030 * 13 11 10 34 34 H 1.09001 * 109.88657 * 218.38824 * 14 13 11 35 35 H 1.09000 * 110.00958 * 97.29295 * 14 13 11 36 36 H 1.09005 * 109.47442 * 300.00684 * 18 16 15 37 37 H 1.09001 * 109.47226 * 60.00133 * 18 16 15 38 38 H 0.96999 * 119.99565 * 0.02562 * 19 18 16 39 39 H 1.08997 * 109.88709 * 300.51503 * 23 22 20 40 40 H 1.09007 * 109.88275 * 61.68192 * 23 22 20 41 41 H 1.09000 * 110.92344 * 264.11906 * 24 23 22 42 42 H 1.08999 * 110.74272 * 140.85709 * 24 23 22 43 43 H 1.08998 * 111.00848 * 206.22978 * 25 24 23 44 44 H 1.09003 * 111.03979 * 82.38871 * 25 24 23 45 45 H 1.09006 * 110.36182 * 274.67546 * 26 22 20 46 46 H 1.08993 * 110.36233 * 36.99552 * 26 22 20 47 47 H 1.08999 * 110.36251 * 265.28624 * 27 15 14 48 48 H 1.08999 * 110.36400 * 142.97187 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3251 -4.6999 0.7902 13 6 0.3774 -4.9638 -1.3863 14 6 0.0017 -6.4599 -1.4318 15 7 0.8818 -7.1599 -0.4847 16 6 0.8560 -8.4807 -0.2175 17 8 1.6329 -8.9522 0.5856 18 6 -0.1384 -9.3715 -0.9164 19 7 0.0346 -10.7516 -0.4565 20 6 -0.7512 -11.7296 -0.9491 21 8 -1.6033 -11.4665 -1.7755 22 7 -0.5917 -12.9994 -0.5263 23 6 0.3999 -13.4565 0.4583 24 6 0.2273 -14.9827 0.6080 25 6 -0.4632 -15.3842 -0.7222 26 6 -1.3780 -14.1611 -0.9797 27 6 1.7978 -6.1779 0.1237 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6853 -3.7142 -0.8912 31 1 2.6841 -3.7150 0.8887 32 1 -0.5151 -4.3402 -1.4410 33 1 1.0721 -4.7160 -2.1889 34 1 0.1548 -6.8502 -2.4379 35 1 -1.0394 -6.5922 -1.1374 36 1 -1.1501 -9.0366 -0.6873 37 1 0.0249 -9.3238 -1.9931 38 1 0.7147 -10.9615 0.2025 39 1 1.4055 -13.2281 0.1052 40 1 0.2220 -12.9695 1.4171 41 1 -0.4094 -15.2206 1.4601 42 1 1.1960 -15.4733 0.7031 43 1 -1.0518 -16.2932 -0.5980 44 1 0.2674 -15.5007 -1.5227 45 1 -2.2972 -14.2465 -0.4001 46 1 -1.6050 -14.0741 -2.0421 47 1 2.7415 -6.1512 -0.4212 48 1 1.9711 -6.4198 1.1723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752939579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:08 Heat of formation + Delta-G solvation = -45.633602 kcal Electronic energy + Delta-G solvation = -26949.825303 eV Core-core repulsion = 23040.026071 eV Total energy + Delta-G solvation = -3909.799232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78974 -40.07167 -38.15209 -37.62828 -35.01229 -34.69744 -32.60208 -32.00706 -30.29812 -29.59942 -29.22721 -27.75778 -25.02159 -23.80405 -22.99784 -22.59548 -21.67427 -20.36700 -20.22637 -19.70221 -18.58658 -17.32341 -17.09985 -16.89980 -16.76746 -16.02537 -15.88118 -15.36741 -14.84718 -14.36845 -14.17919 -14.07766 -13.90607 -13.75900 -13.67725 -13.49850 -13.29921 -13.13055 -12.77127 -12.73850 -12.61629 -12.41066 -11.87168 -11.84828 -11.72746 -11.28148 -11.07065 -10.85554 -10.71010 -10.55917 -10.54761 -10.45612 -10.18443 -9.99359 -9.54424 -9.20817 -8.93572 -8.91538 -8.82967 -7.04309 -6.13328 -3.13433 2.07750 2.30546 2.80484 2.86567 3.50703 3.54058 3.61558 3.71566 4.05897 4.11109 4.15764 4.39191 4.58809 4.60292 4.75034 4.75764 4.87160 4.89401 5.03562 5.06885 5.10185 5.18209 5.22111 5.33111 5.33660 5.35995 5.44819 5.49283 5.58618 5.63096 5.74465 5.79969 5.86647 5.87443 5.89700 5.96109 6.07487 6.19579 6.27430 6.59162 6.66032 6.69983 7.26427 7.58759 7.77817 7.82020 8.23874 8.72980 9.19318 10.05693 10.20154 11.35188 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.045626 B = 0.001748 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.543405 B =16015.356757 C =16424.668685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.121 4.121 14 C 0.094 3.906 15 N -0.610 5.610 16 C 0.524 3.476 17 O -0.544 6.544 18 C 0.125 3.875 19 N -0.733 5.733 20 C 0.726 3.274 21 O -0.589 6.589 22 N -0.637 5.637 23 C 0.096 3.904 24 C -0.130 4.130 25 C -0.135 4.135 26 C 0.124 3.876 27 C 0.114 3.886 28 H 0.254 0.746 29 H 0.367 0.633 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.408 0.592 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -30.899 -1.331 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.029 4.029 15 N -0.344 5.344 16 C 0.312 3.688 17 O -0.422 6.422 18 C -0.003 4.003 19 N -0.392 5.392 20 C 0.427 3.573 21 O -0.467 6.467 22 N -0.376 5.376 23 C -0.028 4.028 24 C -0.168 4.168 25 C -0.173 4.173 26 C 0.001 3.999 27 C -0.008 4.008 28 H 0.065 0.935 29 H 0.200 0.800 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.748 -29.262 -1.528 29.311 hybrid contribution 0.268 -1.697 0.335 1.751 sum -0.480 -30.959 -1.193 30.986 Atomic orbital electron populations 1.70897 1.06029 1.28351 1.53593 1.25787 0.97050 1.01010 1.00361 0.83236 0.74218 0.75564 0.75878 1.21016 1.22259 1.22245 1.20029 0.92070 0.85776 1.48536 0.91732 1.42303 1.04848 1.00789 1.90814 1.20480 0.92611 0.84353 0.98338 1.22603 0.98692 0.93817 0.97595 0.89697 1.22668 1.02152 0.92992 0.98085 1.22256 0.94177 0.93723 0.92725 1.48437 1.36736 1.06318 1.42883 1.20083 0.84686 0.81528 0.82546 1.90688 1.42077 1.73694 1.35773 1.20854 0.99181 0.80570 0.99722 1.44747 1.40228 1.06116 1.48068 1.15259 0.81592 0.79332 0.81069 1.90943 1.37508 1.81595 1.36700 1.47526 1.38621 1.05839 1.45646 1.22051 0.92545 0.95716 0.92448 1.22603 1.02032 0.93838 0.98290 1.22815 0.99194 0.97565 0.97726 1.22093 0.93958 0.82966 1.00869 1.22291 0.92707 0.86707 0.99107 0.93455 0.79978 0.95806 0.95923 0.89504 0.90050 0.90985 0.90947 0.88357 0.88388 0.75469 0.91371 0.91356 0.90323 0.89807 0.89545 0.90471 0.91512 0.90232 0.90876 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.79 13.70 55.49 0.76 -28.03 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.68 29.92 -169.99 -5.09 20.59 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.09 5.55 -59.91 -0.33 -18.42 16 10 C 0.17 3.26 5.71 -4.05 -0.02 3.24 16 11 C -0.11 -1.60 3.05 -88.47 -0.27 -1.87 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.12 -1.57 6.37 -24.90 -0.16 -1.72 16 14 C 0.09 0.98 6.49 -3.07 -0.02 0.96 16 15 N -0.61 -7.45 3.33 -170.53 -0.57 -8.02 16 16 C 0.52 6.58 7.92 -10.99 -0.09 6.49 16 17 O -0.54 -8.27 15.92 5.56 0.09 -8.18 16 18 C 0.12 1.33 5.35 -5.19 -0.03 1.30 16 19 N -0.73 -8.05 5.49 -66.41 -0.36 -8.41 16 20 C 0.73 8.82 8.49 -86.92 -0.74 8.08 16 21 O -0.59 -9.12 16.60 5.29 0.09 -9.03 16 22 N -0.64 -5.84 3.33 -176.24 -0.59 -6.42 16 23 C 0.10 0.60 6.14 -3.06 -0.02 0.58 16 24 C -0.13 -0.51 6.95 -24.90 -0.17 -0.68 16 25 C -0.13 -0.57 7.08 -24.59 -0.17 -0.74 16 26 C 0.12 0.89 6.91 -2.54 -0.02 0.87 16 27 C 0.11 1.53 6.38 -2.53 -0.02 1.51 16 28 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 29 H 0.37 9.07 6.50 -40.82 -0.27 8.80 16 30 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.41 4.25 6.42 -40.82 -0.26 3.99 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 47 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 48 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -35.52 388.97 -10.11 -45.64 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.01 Total: 7.23 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.97 Total: 7.19 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.09 Total: -69.31 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.18 Total: -17.21 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.09 Total: 20.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.52 -10.11 -45.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752939579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.005 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds