Wall clock time and date at job start Fri Apr 10 2020 18:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.88722 * 308.88170 * 11 10 9 13 13 C 1.55160 * 111.00386 * 72.80359 * 11 10 9 14 14 C 1.54318 * 102.94392 * 153.57569 * 13 11 10 15 15 N 1.47019 * 107.27266 * 337.80790 * 14 13 11 16 16 C 1.34776 * 125.65134 * 178.97695 * 15 14 13 17 17 O 1.21281 * 120.00426 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.99901 * 359.95336 * 16 15 14 19 19 N 1.46499 * 109.47331 * 180.02562 * 18 16 15 20 20 C 1.34781 * 119.99994 * 180.02562 * 19 18 16 21 21 O 1.21586 * 119.99825 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00007 * 179.97438 * 20 19 18 23 23 C 1.47028 * 125.64538 * 359.69241 * 22 20 19 24 24 C 1.54320 * 107.27585 * 180.96567 * 23 22 20 25 25 C 1.55155 * 102.86135 * 22.52801 * 24 23 22 26 26 C 1.47425 * 125.65212 * 180.02562 * 22 20 19 27 27 C 1.47429 * 108.70067 * 358.94004 * 15 14 13 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 32 32 H 1.09007 * 110.71711 * 271.94171 * 13 11 10 33 33 H 1.09003 * 110.71678 * 35.21030 * 13 11 10 34 34 H 1.09001 * 109.88657 * 218.38824 * 14 13 11 35 35 H 1.09000 * 110.00958 * 97.29295 * 14 13 11 36 36 H 1.09005 * 109.47442 * 300.00684 * 18 16 15 37 37 H 1.09001 * 109.47226 * 60.00133 * 18 16 15 38 38 H 0.96999 * 119.99565 * 0.02562 * 19 18 16 39 39 H 1.08997 * 109.88709 * 300.51503 * 23 22 20 40 40 H 1.09007 * 109.88275 * 61.68192 * 23 22 20 41 41 H 1.09000 * 110.92344 * 264.11906 * 24 23 22 42 42 H 1.08999 * 110.74272 * 140.85709 * 24 23 22 43 43 H 1.08998 * 111.00848 * 206.22978 * 25 24 23 44 44 H 1.09003 * 111.03979 * 82.38871 * 25 24 23 45 45 H 1.09006 * 110.36182 * 274.67546 * 26 22 20 46 46 H 1.08993 * 110.36233 * 36.99552 * 26 22 20 47 47 H 1.08999 * 110.36251 * 265.28624 * 27 15 14 48 48 H 1.08999 * 110.36400 * 142.97187 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3251 -4.6999 0.7902 13 6 0.3774 -4.9638 -1.3863 14 6 0.0017 -6.4599 -1.4318 15 7 0.8818 -7.1599 -0.4847 16 6 0.8560 -8.4807 -0.2175 17 8 1.6329 -8.9522 0.5856 18 6 -0.1384 -9.3715 -0.9164 19 7 0.0346 -10.7516 -0.4565 20 6 -0.7512 -11.7296 -0.9491 21 8 -1.6033 -11.4665 -1.7755 22 7 -0.5917 -12.9994 -0.5263 23 6 0.3999 -13.4565 0.4583 24 6 0.2273 -14.9827 0.6080 25 6 -0.4632 -15.3842 -0.7222 26 6 -1.3780 -14.1611 -0.9797 27 6 1.7978 -6.1779 0.1237 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6853 -3.7142 -0.8912 31 1 2.6841 -3.7150 0.8887 32 1 -0.5151 -4.3402 -1.4410 33 1 1.0721 -4.7160 -2.1889 34 1 0.1548 -6.8502 -2.4379 35 1 -1.0394 -6.5922 -1.1374 36 1 -1.1501 -9.0366 -0.6873 37 1 0.0249 -9.3238 -1.9931 38 1 0.7147 -10.9615 0.2025 39 1 1.4055 -13.2281 0.1052 40 1 0.2220 -12.9695 1.4171 41 1 -0.4094 -15.2206 1.4601 42 1 1.1960 -15.4733 0.7031 43 1 -1.0518 -16.2932 -0.5980 44 1 0.2674 -15.5007 -1.5227 45 1 -2.2972 -14.2465 -0.4001 46 1 -1.6050 -14.0741 -2.0421 47 1 2.7415 -6.1512 -0.4212 48 1 1.9711 -6.4198 1.1723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752939579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:07 Heat of formation + Delta-G solvation = -70.569228 kcal Electronic energy + Delta-G solvation = -26950.906593 eV Core-core repulsion = 23040.026071 eV Total energy + Delta-G solvation = -3910.880521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68912 -40.99943 -39.14708 -38.45980 -36.78110 -35.63839 -34.14239 -32.70054 -31.84309 -30.45137 -30.00976 -28.80426 -26.58168 -24.85626 -24.25053 -23.93039 -22.08495 -21.50266 -21.19089 -20.61254 -19.42093 -19.33535 -17.96799 -17.81569 -17.69931 -17.03348 -16.80081 -16.46036 -16.07660 -15.82286 -15.53949 -15.10757 -15.02867 -14.95404 -14.56927 -14.37050 -14.13946 -14.04834 -13.92170 -13.73188 -13.60482 -13.22794 -13.10652 -12.76852 -12.58247 -12.24757 -12.22839 -12.15824 -11.91122 -11.86254 -11.72866 -11.61288 -11.51984 -11.30668 -11.18523 -10.91995 -10.45864 -9.84523 -9.61657 -9.10731 -8.39305 -5.33382 1.25783 1.31536 1.60001 1.69433 1.85930 1.88887 1.96440 2.71647 2.89098 3.14851 3.40091 3.50460 3.53599 3.65772 3.70096 3.77571 4.04931 4.09136 4.18459 4.22522 4.25071 4.28534 4.30302 4.46632 4.47059 4.54952 4.60572 4.71871 4.74662 4.83522 4.87150 4.91519 4.96054 4.97654 5.08586 5.10664 5.14005 5.17658 5.22516 5.30709 5.34220 5.59129 5.90080 6.28181 6.51070 6.76185 6.83283 7.09939 7.35895 8.00485 8.10599 9.12946 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.045626 B = 0.001748 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.543405 B =16015.356757 C =16424.668685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.127 2.873 4 H -0.293 1.293 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.338 4.338 8 H 0.066 0.934 9 N -0.753 5.753 10 C 0.170 3.830 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.118 4.118 14 C 0.099 3.901 15 N -0.609 5.609 16 C 0.527 3.473 17 O -0.573 6.573 18 C 0.130 3.870 19 N -0.730 5.730 20 C 0.719 3.281 21 O -0.629 6.629 22 N -0.639 5.639 23 C 0.088 3.912 24 C -0.122 4.122 25 C -0.124 4.124 26 C 0.114 3.886 27 C 0.122 3.878 28 H 0.245 0.755 29 H 0.363 0.637 30 H 0.027 0.973 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.410 0.590 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -32.596 -1.457 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.293 4.293 3 Si 0.952 3.048 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.469 4.469 8 H 0.084 0.916 9 N -0.398 5.398 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.156 4.156 14 C -0.023 4.023 15 N -0.342 5.342 16 C 0.316 3.684 17 O -0.453 6.453 18 C 0.003 3.997 19 N -0.389 5.389 20 C 0.420 3.580 21 O -0.511 6.511 22 N -0.377 5.377 23 C -0.034 4.034 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.008 4.008 27 C -0.001 4.001 28 H 0.056 0.944 29 H 0.195 0.805 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.007 -31.025 -1.643 31.069 hybrid contribution 0.087 -1.238 0.399 1.303 sum 0.079 -32.263 -1.244 32.287 Atomic orbital electron populations 1.70998 1.07105 1.27961 1.56108 1.27174 0.97138 1.04569 1.00455 0.82632 0.73392 0.71670 0.77116 1.21902 1.20562 1.20312 1.20391 0.92419 0.87172 1.46911 0.91637 1.42475 1.04869 1.01716 1.90725 1.20587 0.93299 0.83898 0.97923 1.22373 0.97740 0.92937 0.98779 0.90481 1.22612 1.01587 0.94882 0.96488 1.22334 0.94661 0.91618 0.93681 1.48435 1.36670 1.06186 1.42924 1.20331 0.84481 0.81506 0.82063 1.90676 1.43321 1.74196 1.37112 1.20858 0.98798 0.80090 1.00003 1.44717 1.40063 1.06128 1.47954 1.15455 0.81326 0.80272 0.80910 1.90903 1.39159 1.82462 1.38531 1.47695 1.39051 1.05283 1.45637 1.22277 0.91887 0.97537 0.91705 1.22626 1.03154 0.91871 0.98338 1.22798 0.98760 0.96818 0.97869 1.22294 0.94841 0.83653 1.00006 1.22108 0.92940 0.86068 0.99019 0.94440 0.80491 0.95497 0.96434 0.90066 0.90403 0.88527 0.89191 0.87573 0.87275 0.75149 0.91120 0.91195 0.89390 0.88070 0.87418 0.90453 0.91207 0.91762 0.90409 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.70 21.65 0.30 -59.83 16 2 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 3 Si 1.13 51.42 29.92 68.60 2.05 53.48 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.34 -18.84 9.99 84.03 0.84 -18.00 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.75 -36.98 5.55 -343.47 -1.90 -38.89 16 10 C 0.17 6.48 5.71 86.38 0.49 6.97 16 11 C -0.10 -2.88 3.05 -9.40 -0.03 -2.91 16 12 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.12 -2.91 6.37 31.78 0.20 -2.71 16 14 C 0.10 1.85 6.49 86.73 0.56 2.41 16 15 N -0.61 -13.87 3.33 -811.82 -2.70 -16.57 16 16 C 0.53 12.52 7.92 87.66 0.69 13.21 16 17 O -0.57 -16.92 15.92 -3.03 -0.05 -16.97 16 18 C 0.13 2.60 5.35 85.63 0.46 3.06 16 19 N -0.73 -15.47 5.49 -482.29 -2.65 -18.12 16 20 C 0.72 17.21 8.49 179.05 1.52 18.73 16 21 O -0.63 -19.49 16.60 -3.99 -0.07 -19.56 16 22 N -0.64 -11.25 3.33 -829.78 -2.76 -14.01 16 23 C 0.09 0.97 6.14 86.73 0.53 1.51 16 24 C -0.12 -0.66 6.95 31.78 0.22 -0.44 16 25 C -0.12 -0.79 7.08 31.98 0.23 -0.56 16 26 C 0.11 1.56 6.91 86.85 0.60 2.16 16 27 C 0.12 3.14 6.38 86.85 0.55 3.69 16 28 H 0.25 14.97 6.77 -92.71 -0.63 14.34 16 29 H 0.36 18.25 6.50 -92.71 -0.60 17.64 16 30 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.08 1.99 7.92 -2.39 -0.02 1.97 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.41 8.27 6.42 -92.71 -0.60 7.67 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.06 1.06 8.03 -2.39 -0.02 1.04 16 47 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 48 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -76.74 388.97 -0.53 -77.27 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.10 Total: 31.47 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 7.34 Total: 21.72 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -9.72 Total: -147.42 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.11 Total: -36.53 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.48 kcal Total: -76.74 -0.53 -77.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752939579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.704 kcal (2) G-P(sol) polarization free energy of solvation -76.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds