Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09004 * 110.88613 * 57.42899 * 11 10 9 13 13 C 1.55152 * 111.00255 * 293.54734 * 11 10 9 14 14 C 1.54324 * 102.94341 * 206.42112 * 13 11 10 15 15 N 1.47027 * 107.26901 * 22.19549 * 14 13 11 16 16 C 1.34781 * 125.64860 * 181.01694 * 15 14 13 17 17 O 1.21273 * 119.99690 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99948 * 0.02562 * 16 15 14 19 19 N 1.46493 * 109.47179 * 180.02562 * 18 16 15 20 20 C 1.34781 * 120.00291 * 180.02562 * 19 18 16 21 21 O 1.21590 * 119.99683 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00219 * 180.02562 * 20 19 18 23 23 C 1.47023 * 125.64751 * 359.68445 * 22 20 19 24 24 C 1.54318 * 107.27514 * 180.97442 * 23 22 20 25 25 C 1.55153 * 102.86122 * 22.52674 * 24 23 22 26 26 C 1.47419 * 125.64831 * 180.02562 * 22 20 19 27 27 C 1.47424 * 108.70525 * 1.05694 * 15 14 13 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.09004 * 110.71984 * 324.78681 * 13 11 10 33 33 H 1.09000 * 110.72431 * 88.06012 * 13 11 10 34 34 H 1.09004 * 109.88121 * 141.60504 * 14 13 11 35 35 H 1.08996 * 109.88412 * 262.78046 * 14 13 11 36 36 H 1.09004 * 109.47205 * 300.00311 * 18 16 15 37 37 H 1.09006 * 109.47267 * 59.99875 * 18 16 15 38 38 H 0.97001 * 119.99923 * 0.02562 * 19 18 16 39 39 H 1.08999 * 109.88497 * 300.52258 * 23 22 20 40 40 H 1.08999 * 109.87898 * 61.68460 * 23 22 20 41 41 H 1.09003 * 110.91818 * 264.11365 * 24 23 22 42 42 H 1.08995 * 110.74248 * 140.86265 * 24 23 22 43 43 H 1.09007 * 111.00033 * 206.22830 * 25 24 23 44 44 H 1.08998 * 111.04051 * 82.39401 * 25 24 23 45 45 H 1.09003 * 110.36924 * 274.66900 * 26 22 20 46 46 H 1.09003 * 110.37085 * 36.99140 * 26 22 20 47 47 H 1.08993 * 110.37114 * 217.03912 * 27 15 14 48 48 H 1.08992 * 110.36927 * 94.70670 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3947 -4.7548 -0.8690 13 6 0.2621 -4.8725 1.3165 14 6 -0.1207 -6.3632 1.4301 15 7 0.8345 -7.1228 0.6102 16 6 0.8274 -8.4586 0.4310 17 8 1.6681 -8.9808 -0.2699 18 6 -0.2251 -9.3033 1.1016 19 7 -0.0171 -10.7107 0.7525 20 6 -0.8450 -11.6556 1.2408 21 8 -1.7642 -11.3398 1.9714 22 7 -0.6534 -12.9505 0.9200 23 6 0.4100 -13.4687 0.0470 24 6 0.2199 -14.9971 -0.0491 25 6 -1.2780 -15.1821 0.3103 26 6 -1.4796 -14.0811 1.3809 27 6 1.8018 -6.1815 0.0172 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 0.8870 -4.5696 2.1567 33 1 -0.6299 -4.2491 1.2535 34 1 -0.0546 -6.6847 2.4696 35 1 -1.1332 -6.5155 1.0564 36 1 -0.1531 -9.1829 2.1826 37 1 -1.2128 -8.9873 0.7658 38 1 0.7164 -10.9627 0.1700 39 1 0.3282 -13.0202 -0.9431 40 1 1.3856 -13.2448 0.4782 41 1 0.8557 -15.5143 0.6697 42 1 0.4200 -15.3482 -1.0614 43 1 -1.4601 -16.1722 0.7286 44 1 -1.9135 -15.0041 -0.5573 45 1 -1.1350 -14.4310 2.3540 46 1 -2.5285 -13.7888 1.4316 47 1 2.0625 -6.4924 -0.9944 48 1 2.6958 -6.1156 0.6370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752939580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = -69.917793 kcal Electronic energy + Delta-G solvation = -26923.515073 eV Core-core repulsion = 23012.662799 eV Total energy + Delta-G solvation = -3910.852273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65052 -40.95493 -39.07212 -38.43114 -36.46095 -35.60942 -33.99763 -32.68872 -31.91690 -30.41649 -30.00412 -28.84109 -26.77911 -24.77156 -24.08256 -23.87202 -22.06734 -21.37271 -21.16316 -20.54900 -19.37022 -19.11783 -17.90397 -17.84921 -17.42720 -17.15667 -16.66600 -16.49069 -16.08869 -15.68518 -15.32586 -15.04273 -14.91107 -14.82727 -14.54264 -14.33297 -14.11389 -13.94605 -13.86901 -13.74012 -13.51489 -13.21205 -13.02320 -12.94807 -12.75186 -12.22175 -12.21281 -12.14438 -12.11398 -11.79808 -11.67403 -11.60820 -11.59758 -11.49302 -11.18183 -10.91868 -10.43183 -9.78678 -9.59493 -8.97722 -7.94015 -5.22063 1.29275 1.36169 1.49356 1.50258 1.58679 1.93660 1.98741 2.57271 2.91687 3.21295 3.40170 3.60704 3.62514 3.67410 3.72126 3.88318 4.06579 4.20529 4.26061 4.29867 4.30342 4.32303 4.42937 4.48213 4.56405 4.62350 4.63513 4.80591 4.84143 4.85182 4.91809 4.97053 4.99361 5.05486 5.11791 5.16314 5.21647 5.24800 5.25862 5.35790 5.41774 5.51877 5.92396 6.28326 6.34031 6.79112 6.87676 7.35822 7.38302 8.11084 8.34972 9.29257 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.045045 B = 0.001751 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.450051 B =15990.699200 C =16415.781509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.741 5.741 10 C 0.164 3.836 11 C -0.098 4.098 12 H 0.078 0.922 13 C -0.117 4.117 14 C 0.099 3.901 15 N -0.609 5.609 16 C 0.527 3.473 17 O -0.573 6.573 18 C 0.130 3.870 19 N -0.730 5.730 20 C 0.719 3.281 21 O -0.629 6.629 22 N -0.639 5.639 23 C 0.088 3.912 24 C -0.122 4.122 25 C -0.125 4.125 26 C 0.115 3.885 27 C 0.121 3.879 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.020 0.980 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.810 -32.324 1.874 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.384 5.384 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.096 0.904 13 C -0.155 4.155 14 C -0.023 4.023 15 N -0.342 5.342 16 C 0.316 3.684 17 O -0.454 6.454 18 C 0.002 3.998 19 N -0.388 5.388 20 C 0.420 3.580 21 O -0.511 6.511 22 N -0.377 5.377 23 C -0.034 4.034 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.008 4.008 27 C -0.002 4.002 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.249 0.751 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.869 -32.267 2.062 32.345 hybrid contribution 0.334 1.434 -0.354 1.514 sum -0.535 -30.833 1.708 30.885 Atomic orbital electron populations 1.69802 1.06475 1.26025 1.59454 1.25515 0.96384 1.00930 1.03718 0.85173 0.77755 0.79691 0.77334 1.21607 1.22203 1.19507 1.19627 0.91531 0.85394 1.41219 0.90727 1.42466 1.05706 1.00848 1.89400 1.20658 0.93369 0.84263 0.98019 1.22364 0.97415 0.92882 0.99054 0.90367 1.22576 1.00995 0.94781 0.97142 1.22343 0.93016 0.90792 0.96174 1.48450 1.31606 1.05250 1.48867 1.20304 0.85689 0.81400 0.80998 1.90670 1.41183 1.72116 1.41398 1.20859 0.97902 0.79708 1.01325 1.44715 1.34280 1.05306 1.54521 1.15461 0.81851 0.80341 0.80327 1.90904 1.35377 1.81312 1.43486 1.47691 1.33885 1.04056 1.52045 1.22274 0.90304 0.96793 0.94025 1.22624 0.96689 0.92306 1.04350 1.22799 0.96698 0.98625 0.98168 1.22289 0.94992 0.84950 0.98548 1.22135 0.91949 0.86954 0.99152 0.94030 0.79142 0.96215 0.95441 0.90551 0.90114 0.88689 0.89267 0.87356 0.87590 0.75144 0.91219 0.91074 0.89312 0.88127 0.87406 0.90547 0.91124 0.91838 0.90768 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.06 5.45 -343.44 -1.87 -37.93 16 10 C 0.16 6.12 5.71 86.38 0.49 6.62 16 11 C -0.10 -2.84 3.10 -9.40 -0.03 -2.87 16 12 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 13 C -0.12 -2.98 6.13 31.78 0.19 -2.78 16 14 C 0.10 1.90 6.49 86.73 0.56 2.46 16 15 N -0.61 -13.96 3.33 -811.80 -2.70 -16.66 16 16 C 0.53 12.58 7.92 87.66 0.69 13.27 16 17 O -0.57 -16.92 15.92 -3.01 -0.05 -16.97 16 18 C 0.13 2.62 5.35 85.63 0.46 3.08 16 19 N -0.73 -15.56 5.49 -482.30 -2.65 -18.21 16 20 C 0.72 17.31 8.49 179.05 1.52 18.83 16 21 O -0.63 -19.63 16.60 -4.00 -0.07 -19.70 16 22 N -0.64 -11.32 3.33 -829.81 -2.76 -14.08 16 23 C 0.09 0.98 6.14 86.73 0.53 1.51 16 24 C -0.12 -0.66 6.95 31.78 0.22 -0.44 16 25 C -0.12 -0.81 7.08 31.98 0.23 -0.59 16 26 C 0.11 1.57 6.91 86.85 0.60 2.17 16 27 C 0.12 3.10 6.38 86.86 0.55 3.65 16 28 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.38 19.28 7.53 -92.71 -0.70 18.58 16 30 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.03 1.02 8.11 -2.39 -0.02 1.00 16 32 H 0.08 2.03 8.01 -2.39 -0.02 2.01 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 34 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.41 8.30 6.42 -92.71 -0.60 7.70 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 1.06 8.04 -2.39 -0.02 1.05 16 47 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 48 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -73.55 390.49 -0.79 -74.33 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.33 Total: 30.66 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 7.33 Total: 28.67 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -9.70 Total: -144.53 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.11 Total: -36.67 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.55 -0.79 -74.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752939580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.414 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds