Wall clock time and date at job start Fri Apr 10 2020 18:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52998 * 109.47498 * 120.00390 * 2 1 3 5 5 N 1.46494 * 109.47608 * 175.00008 * 4 2 1 6 6 N 1.40126 * 126.16641 * 95.27223 * 5 4 2 7 7 H 0.96998 * 125.90562 * 0.05086 * 6 5 4 8 8 C 1.36596 * 108.18200 * 180.16658 * 6 5 4 9 9 C 1.50694 * 125.77817 * 179.84731 * 8 6 5 10 10 C 1.50705 * 109.47111 * 274.71966 * 9 8 6 11 11 O 1.21283 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00461 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00184 * 179.72373 * 12 10 9 14 14 C 1.53000 * 109.47007 * 179.97438 * 13 12 10 15 15 N 1.46498 * 109.46966 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99744 * 90.00378 * 15 14 13 17 17 C 1.36937 * 120.00580 * 270.00030 * 15 14 13 18 18 H 1.08003 * 119.99321 * 23.04671 * 17 15 14 19 19 C 1.38808 * 120.00451 * 203.04688 * 17 15 14 20 20 N 1.31620 * 119.99970 * 12.93872 * 19 17 15 21 21 Si 1.86798 * 120.00170 * 192.93595 * 19 17 15 22 22 H 1.48505 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47285 * 119.99821 * 21 19 17 24 24 H 1.48500 * 109.47096 * 240.00122 * 21 19 17 25 25 C 1.34825 * 108.44857 * 359.57924 * 8 6 5 26 26 C 1.34872 * 126.16719 * 274.97777 * 5 4 2 27 27 O 1.21780 * 126.18918 * 359.97438 * 26 5 4 28 28 H 1.09002 * 109.46837 * 299.99577 * 1 2 3 29 29 H 1.08996 * 109.47099 * 59.99779 * 1 2 3 30 30 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47166 * 240.00011 * 2 1 3 32 32 H 1.08997 * 109.47235 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47278 * 300.00111 * 3 2 1 34 34 H 1.09002 * 109.46884 * 60.00451 * 3 2 1 35 35 H 1.09004 * 109.47277 * 54.99631 * 4 2 1 36 36 H 1.09008 * 109.46955 * 295.00000 * 4 2 1 37 37 H 1.08993 * 109.47747 * 154.71706 * 9 8 6 38 38 H 1.09005 * 109.47050 * 34.71284 * 9 8 6 39 39 H 0.97003 * 119.99962 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.46901 * 299.99715 * 13 12 10 41 41 H 1.09000 * 109.47391 * 59.99718 * 13 12 10 42 42 H 1.08999 * 109.47411 * 299.99835 * 14 13 12 43 43 H 1.09000 * 109.47399 * 60.00094 * 14 13 12 44 44 H 1.08999 * 109.47427 * 95.12505 * 16 15 14 45 45 H 1.09008 * 109.46912 * 215.11992 * 16 15 14 46 46 H 1.08998 * 109.47031 * 335.11972 * 16 15 14 47 47 H 0.97002 * 120.00018 * 179.97438 * 20 19 17 48 48 H 1.08001 * 125.95425 * 180.28111 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 7 4.4169 0.0530 1.7817 7 1 4.1949 0.8400 2.3035 8 6 5.6772 -0.3881 1.4938 9 6 6.9616 0.2665 1.9329 10 6 7.3330 1.3506 0.9542 11 8 6.6247 1.5698 -0.0056 12 7 8.4527 2.0760 1.1450 13 6 8.8170 3.1258 0.1903 14 6 10.1202 3.7914 0.6369 15 7 10.4848 4.8408 -0.3181 16 6 10.0042 6.2105 -0.1201 17 6 11.2748 4.5416 -1.3959 18 1 11.3270 3.5268 -1.7618 19 6 12.0083 5.5424 -2.0180 20 7 12.1512 6.7133 -1.4342 21 14 12.7929 5.2274 -3.6837 22 1 12.4854 3.8421 -4.1217 23 1 12.2522 6.1911 -4.6758 24 1 14.2642 5.3986 -3.5782 25 6 5.5776 -1.5117 0.7552 26 6 4.2041 -1.7903 0.5624 27 8 3.7411 -2.7304 -0.0579 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6055 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1370 37 1 7.7559 -0.4790 1.9680 38 1 6.8275 0.7015 2.9234 39 1 9.0194 1.9005 1.9125 40 1 8.9528 2.6869 -0.7981 41 1 8.0234 3.8720 0.1505 42 1 9.9840 4.2304 1.6252 43 1 10.9140 3.0454 0.6769 44 1 10.7635 6.7896 0.4055 45 1 9.8035 6.6687 -1.0886 46 1 9.0880 6.1922 0.4701 47 1 12.6641 7.4126 -1.8688 48 1 6.4026 -2.0971 0.3769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753056011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:14 Heat of formation + Delta-G solvation = 18.870258 kcal Electronic energy + Delta-G solvation = -27269.057993 eV Core-core repulsion = 23362.055859 eV Total energy + Delta-G solvation = -3907.002134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.77520 -39.56213 -37.10256 -36.79339 -36.12759 -34.27504 -33.18961 -31.45842 -30.17230 -30.00900 -27.97928 -27.49863 -26.00140 -25.80381 -23.40097 -21.50800 -21.33123 -20.77260 -20.31007 -20.10255 -18.33468 -17.26211 -16.69069 -16.06858 -15.98234 -15.92270 -15.45957 -15.26686 -14.80755 -14.60334 -14.17210 -13.95137 -13.77330 -13.67119 -13.58008 -13.26063 -13.03828 -12.78076 -12.65926 -12.48315 -12.40432 -12.29276 -12.15497 -11.67637 -11.34100 -11.23904 -11.11712 -10.96652 -10.90285 -10.64549 -10.41076 -10.04352 -9.98466 -9.89882 -9.82265 -9.31898 -8.85198 -8.61381 -7.98116 -6.85386 -5.79071 -3.27475 1.35395 1.53695 2.60845 3.11506 3.35378 3.39239 3.43774 3.46338 3.58834 4.13699 4.32968 4.43302 4.46230 4.64957 4.69175 4.77231 4.84476 5.03895 5.08068 5.25398 5.26036 5.32545 5.34716 5.49316 5.56005 5.56389 5.69334 5.71812 5.74927 5.78859 5.82456 5.96311 5.98511 6.17021 6.22904 6.47031 6.56854 6.68008 6.79335 7.01804 7.30395 7.31328 7.56892 7.65508 7.75975 8.24270 8.24483 8.33089 9.16130 9.78422 10.25872 11.25820 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002179 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.192966 B =12846.047623 C =13122.698845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.140 3.860 5 N -0.413 5.413 6 N -0.489 5.489 7 H 0.437 0.563 8 C 0.211 3.789 9 C -0.090 4.090 10 C 0.507 3.493 11 O -0.530 6.530 12 N -0.720 5.720 13 C 0.094 3.906 14 C 0.144 3.856 15 N -0.597 5.597 16 C 0.161 3.839 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C -0.334 4.334 26 C 0.535 3.465 27 O -0.558 6.558 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.398 0.602 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.033 0.967 45 H 0.042 0.958 46 H -0.002 1.002 47 H 0.253 0.747 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 -11.800 13.525 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.208 4.208 4 C 0.019 3.981 5 N -0.236 5.236 6 N -0.210 5.210 7 H 0.282 0.718 8 C 0.093 3.907 9 C -0.132 4.132 10 C 0.291 3.709 11 O -0.406 6.406 12 N -0.372 5.372 13 C -0.031 4.031 14 C 0.015 3.985 15 N -0.320 5.320 16 C 0.016 3.984 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C -0.365 4.365 26 C 0.334 3.666 27 O -0.438 6.438 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.232 0.768 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.899 -11.918 12.429 25.567 hybrid contribution 0.644 0.474 -0.325 0.863 sum -18.254 -11.444 12.104 24.712 Atomic orbital electron populations 1.21762 0.93934 1.02159 1.02282 1.21608 0.96276 0.97115 0.98826 1.21873 1.01968 0.95082 1.01861 1.21807 0.74722 1.02791 0.98761 1.48479 1.02268 1.21854 1.51003 1.43795 0.99738 1.25196 1.52284 0.71780 1.20041 0.84262 0.92748 0.93608 1.20546 0.93793 0.98731 1.00132 1.20181 0.81757 0.82491 0.86466 1.90791 1.51160 1.68166 1.30504 1.46053 1.24839 1.37064 1.29236 1.22475 0.99649 0.88457 0.92560 1.20837 0.93007 0.92226 0.92430 1.43797 1.57193 1.04434 1.26582 1.20842 0.93346 0.85169 0.99023 1.19228 1.19594 0.95150 1.04939 0.91236 1.25039 0.98186 0.96790 0.99486 1.70078 1.43191 1.04517 1.37309 0.86170 0.78674 0.77777 0.83840 1.20183 1.21523 1.21648 1.21678 0.97498 1.03465 1.13888 1.16963 0.87770 0.81699 0.80203 1.90847 1.77020 1.31136 1.44812 0.92512 0.91951 0.92251 0.90020 0.91965 0.92195 0.92967 0.88258 0.89828 0.85178 0.86997 0.76802 0.91416 0.92250 0.94105 0.92848 0.94825 0.93927 0.98323 0.93703 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.12 -1.02 3.13 -90.62 -0.28 -1.31 16 3 C -0.15 -1.35 9.08 37.16 0.34 -1.01 16 4 C 0.14 1.14 5.75 -4.05 -0.02 1.11 16 5 N -0.41 -4.45 3.14 -63.24 -0.20 -4.65 16 6 N -0.49 -4.21 6.73 33.67 0.23 -3.98 16 7 H 0.44 2.47 8.96 -182.58 -1.64 0.84 16 8 C 0.21 2.04 5.70 -81.68 -0.47 1.57 16 9 C -0.09 -0.61 6.24 -29.03 -0.18 -0.79 16 10 C 0.51 6.01 7.82 -10.99 -0.09 5.92 16 11 O -0.53 -8.99 16.03 5.55 0.09 -8.91 16 12 N -0.72 -8.35 5.56 -60.30 -0.33 -8.69 16 13 C 0.09 1.57 6.00 -4.04 -0.02 1.54 16 14 C 0.14 2.63 5.76 -4.04 -0.02 2.60 16 15 N -0.60 -14.41 2.92 -181.12 -0.53 -14.94 16 16 C 0.16 3.83 8.98 59.85 0.54 4.37 16 17 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 18 H 0.07 1.83 7.86 -52.48 -0.41 1.42 16 19 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 20 N -0.91 -25.98 10.71 55.49 0.59 -25.39 16 21 Si 0.91 21.68 29.57 -169.99 -5.03 16.65 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.33 -4.17 10.73 -39.56 -0.42 -4.60 16 26 C 0.54 7.80 7.95 -14.99 -0.12 7.68 16 27 O -0.56 -10.15 17.92 5.12 0.09 -10.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.71 7.23 -51.93 -0.38 0.33 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 43 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 44 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 45 H 0.04 1.10 7.34 -51.92 -0.38 0.72 16 46 H 0.00 -0.04 8.03 -51.93 -0.42 -0.45 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -37.12 400.41 -9.12 -46.24 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -9.42 Total: -1.73 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.65 Total: 9.42 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.24 Total: -57.65 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.12 -9.12 -46.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753056011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.110 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds