Wall clock time and date at job start Fri Apr 10 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00184 * 2 1 4 4 H 1.48499 * 109.47018 * 240.00255 * 3 2 1 5 5 H 1.48501 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47324 * 119.99886 * 3 2 1 7 7 C 1.38815 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99680 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.47486 * 125.59561 * 0.03336 * 9 7 2 11 11 C 1.54323 * 107.03754 * 180.99611 * 10 9 7 12 12 C 1.55153 * 103.10236 * 22.24109 * 11 10 9 13 13 H 1.09003 * 111.00505 * 82.48412 * 12 11 10 14 14 C 1.53000 * 111.00844 * 206.29737 * 12 11 10 15 15 C 1.52992 * 109.47434 * 184.99848 * 14 12 11 16 16 N 1.46498 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.34771 * 120.00518 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99919 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00521 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.87774 * 40.43283 * 19 17 16 21 21 C 1.54330 * 109.88047 * 279.26091 * 19 17 16 22 22 C 1.55156 * 102.94270 * 218.38819 * 21 19 17 23 23 C 1.54909 * 101.58345 * 35.50414 * 22 21 19 24 24 N 1.47021 * 109.88834 * 161.45582 * 19 17 16 25 25 C 1.34778 * 125.64439 * 298.39135 * 24 19 17 26 26 N 1.34774 * 120.00154 * 179.97438 * 25 24 19 27 27 O 1.21588 * 120.00168 * 0.02562 * 25 24 19 28 28 C 1.47428 * 125.64712 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.02886 * 61.62961 * 10 9 7 31 31 H 1.09005 * 109.96368 * 300.31818 * 10 9 7 32 32 H 1.09002 * 110.72057 * 263.78860 * 11 10 9 33 33 H 1.09003 * 110.71837 * 140.69433 * 11 10 9 34 34 H 1.09004 * 109.47137 * 305.00463 * 14 12 11 35 35 H 1.09004 * 109.46620 * 64.99520 * 14 12 11 36 36 H 1.08994 * 109.47169 * 300.00001 * 15 14 12 37 37 H 1.09002 * 109.47082 * 59.99857 * 15 14 12 38 38 H 0.97010 * 120.00229 * 359.97438 * 16 15 14 39 39 H 1.09002 * 110.71904 * 336.75174 * 21 19 17 40 40 H 1.08996 * 110.72252 * 100.02576 * 21 19 17 41 41 H 1.09003 * 111.00704 * 277.43028 * 22 21 19 42 42 H 1.09005 * 111.03925 * 153.59193 * 22 21 19 43 43 H 1.09004 * 110.36882 * 204.15705 * 23 22 21 44 44 H 1.09000 * 110.36914 * 81.82556 * 23 22 21 45 45 H 0.97003 * 120.00238 * 0.02562 * 26 25 24 46 46 H 0.96996 * 120.00118 * 180.02562 * 26 25 24 47 47 H 1.09000 * 110.36462 * 37.08818 * 28 9 7 48 48 H 1.08996 * 110.46287 * 274.80899 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5318 -0.0007 11 6 -0.4486 -4.0441 0.0255 12 6 0.8511 -4.6561 0.6118 13 1 0.8547 -4.5961 1.7002 14 6 1.0362 -6.1012 0.1446 15 6 2.2562 -6.7094 0.8391 16 7 2.4332 -8.0933 0.3922 17 6 3.4515 -8.8324 0.8748 18 8 4.2214 -8.3520 1.6796 19 6 3.6338 -10.2558 0.4146 20 1 3.4406 -10.3268 -0.6557 21 6 2.6734 -11.1843 1.1874 22 6 3.5320 -12.4552 1.4216 23 6 4.9389 -11.8444 1.6387 24 7 5.0033 -10.7042 0.7064 25 6 6.1308 -10.1621 0.2051 26 7 7.3322 -10.6654 0.5512 27 8 6.0643 -9.2183 -0.5586 28 6 1.9334 -3.7312 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5605 -2.0844 -0.9024 31 1 -0.5639 -2.0529 0.8831 32 1 -0.6306 -4.4182 -0.9820 33 1 -1.2999 -4.2540 0.6729 34 1 0.1482 -6.6810 0.3962 35 1 1.1869 -6.1175 -0.9349 36 1 3.1442 -6.1296 0.5874 37 1 2.1055 -6.6930 1.9185 38 1 1.8168 -8.4780 -0.2507 39 1 2.3830 -10.7346 2.1370 40 1 1.7952 -11.4177 0.5855 41 1 3.5184 -13.1029 0.5450 42 1 3.1991 -12.9944 2.3084 43 1 5.7111 -12.5752 1.3980 44 1 5.0485 -11.5001 2.6671 45 1 7.3854 -11.4181 1.1607 46 1 8.1437 -10.2750 0.1907 47 1 2.8324 -3.7406 0.6168 48 1 2.1685 -4.0430 -1.0170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753341391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:17 Heat of formation + Delta-G solvation = -41.873680 kcal Electronic energy + Delta-G solvation = -27694.997216 eV Core-core repulsion = 23785.361027 eV Total energy + Delta-G solvation = -3909.636189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95910 -39.16202 -37.80957 -37.34918 -35.10161 -33.96467 -32.95317 -31.57516 -31.03712 -29.79134 -28.79325 -26.51983 -24.86211 -24.23544 -22.46806 -21.94785 -21.29005 -20.00672 -19.91355 -19.33269 -18.60165 -17.74103 -16.99693 -16.78982 -15.95071 -15.69128 -15.53946 -15.00280 -14.84905 -14.72223 -14.49831 -13.98461 -13.70481 -13.63529 -13.41470 -13.36250 -12.81755 -12.43881 -12.26376 -12.02295 -11.87037 -11.83934 -11.72711 -11.45744 -11.42977 -11.02221 -10.80594 -10.68843 -10.46205 -10.10152 -10.09151 -9.90549 -9.89393 -9.78268 -9.69898 -9.53539 -9.00223 -8.89648 -8.51721 -6.73396 -5.62559 -2.95148 2.24898 2.65613 2.96790 3.26337 3.47264 3.50702 3.52436 3.86034 3.97656 4.14308 4.39011 4.58101 4.63198 4.70122 4.91857 5.00109 5.05236 5.17767 5.20418 5.30317 5.33069 5.37760 5.56042 5.57613 5.68817 5.72997 5.75469 5.85059 5.98117 6.09904 6.20662 6.30178 6.45767 6.47713 6.51388 6.62830 6.66653 6.68858 6.82930 7.06805 7.48035 7.59884 7.65066 7.71471 7.90874 8.22331 8.34847 8.41128 9.31152 9.91916 10.58840 11.49452 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002264 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.722414 B =12364.353757 C =13396.003377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.075 0.925 14 C -0.115 4.115 15 C 0.120 3.880 16 N -0.726 5.726 17 C 0.506 3.494 18 O -0.526 6.526 19 C 0.138 3.862 20 H 0.097 0.903 21 C -0.121 4.121 22 C -0.129 4.129 23 C 0.099 3.901 24 N -0.618 5.618 25 C 0.729 3.271 26 N -0.864 5.864 27 O -0.580 6.580 28 C 0.140 3.860 29 H 0.251 0.749 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.394 0.606 46 H 0.416 0.584 47 H 0.037 0.963 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -32.145 2.827 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.003 4.003 16 N -0.378 5.378 17 C 0.290 3.710 18 O -0.401 6.401 19 C 0.029 3.971 20 H 0.115 0.885 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.024 4.024 24 N -0.357 5.357 25 C 0.429 3.571 26 N -0.433 5.433 27 O -0.456 6.456 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.222 0.778 46 H 0.248 0.752 47 H 0.055 0.945 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.316 -30.853 2.881 31.440 hybrid contribution 0.567 0.594 -0.130 0.832 sum 5.883 -30.259 2.752 30.949 Atomic orbital electron populations 1.69959 1.04851 1.24977 1.57485 1.24793 0.95731 0.97615 1.02542 0.86194 0.78424 0.83241 0.77910 1.21220 1.21648 1.21202 1.19049 0.90438 0.82565 1.43304 0.90564 1.44600 1.01729 0.99949 1.87141 1.21209 0.84276 0.88336 1.00879 1.22898 0.95913 0.99528 0.99335 1.22265 0.97602 0.92009 1.00114 0.90659 1.21739 0.96454 0.96538 1.00616 1.21466 0.99291 0.80510 0.99058 1.46000 1.30797 1.14262 1.46778 1.20753 0.80750 0.87868 0.81642 1.90709 1.43260 1.72567 1.33579 1.21337 0.82583 0.92029 1.01114 0.88474 1.22633 0.97329 0.94658 1.01327 1.22764 0.93742 0.96894 1.03300 1.22338 0.98428 0.87687 0.93984 1.47172 1.03962 1.34845 1.49738 1.15352 0.79934 0.81467 0.80337 1.42910 1.06881 1.39331 1.54142 1.91017 1.85549 1.29099 1.39944 1.21611 0.94303 0.86049 0.96661 0.93830 0.94072 0.93689 0.92603 0.92409 0.91684 0.91269 0.91043 0.91626 0.76861 0.89748 0.88689 0.90025 0.89194 0.90552 0.91042 0.77755 0.75211 0.94505 0.96471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.14 10.31 55.49 0.57 -27.56 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.62 10.28 -15.06 -0.15 -6.77 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -16.38 3.41 -169.68 -0.58 -16.96 16 10 C 0.18 4.47 5.39 -2.81 -0.02 4.46 16 11 C -0.14 -2.60 6.41 -24.90 -0.16 -2.76 16 12 C -0.10 -1.76 3.01 -88.46 -0.27 -2.02 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.12 -1.53 4.84 -26.73 -0.13 -1.66 16 15 C 0.12 1.67 5.58 -4.05 -0.02 1.65 16 16 N -0.73 -8.46 5.56 -60.30 -0.33 -8.80 16 17 C 0.51 6.81 6.27 -10.99 -0.07 6.74 16 18 O -0.53 -9.55 16.13 5.55 0.09 -9.46 16 19 C 0.14 1.29 3.26 -68.10 -0.22 1.07 16 20 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 21 C -0.12 -0.63 6.47 -24.89 -0.16 -0.79 16 22 C -0.13 -0.44 7.08 -24.58 -0.17 -0.62 16 23 C 0.10 0.53 6.57 -2.53 -0.02 0.51 16 24 N -0.62 -6.08 2.75 -170.00 -0.47 -6.55 16 25 C 0.73 9.22 8.16 -86.92 -0.71 8.51 16 26 N -0.86 -6.78 8.83 27.63 0.24 -6.54 16 27 O -0.58 -10.35 16.98 5.29 0.09 -10.26 16 28 C 0.14 3.07 6.19 -2.51 -0.02 3.05 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 31 H 0.04 1.24 7.39 -51.93 -0.38 0.86 16 32 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 3.27 8.47 -40.82 -0.35 2.93 16 39 H 0.08 0.51 7.84 -51.93 -0.41 0.11 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.08 0.23 7.30 -51.93 -0.38 -0.15 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.39 1.76 7.31 -40.82 -0.30 1.46 16 46 H 0.42 2.88 8.93 -40.82 -0.36 2.52 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -40.29 383.82 -9.82 -50.11 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.99 Total: 1.25 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.21 Total: 10.95 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.56 Total: -66.41 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.18 Total: -19.72 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.29 -9.82 -50.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753341391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.239 kcal (2) G-P(sol) polarization free energy of solvation -40.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds